Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009845

Physical Location & Seq

Genomic Coordinates Forward (+)

82768979 .. 82772772

Gene Structure 3794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG524700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGTGTTCCTGATCCAGAAGCGATCAAGCAGTTTCAGTTGTTAATGGAAGAAGTTGATGAACCGCTGAAGAAGACATTTGAGAATGTGCACCAAGGGTATCCAAATGAGACATTTGTGCGGTTTCTTAAAGCGAGGGACTGGAATGTTGGCAAAGCCCACAAAATGTTGGTTGACTGTTTGCAATGGAGGATAGACAGCGAAATTGACAATATATTGGCGAAACCAATCATCCCTACTGATTTGTACAGAGCAGTGCGAGATTCTCAGCTTTTGGGATTGTCTGGTTACTCAAAAGAGGGTCTTCCTGTCATTGCTATTGGTGTTGGGCTCAGCACATATGACAAAGCTTCTGTAAATTACTATGTTCAGTCGCACATCCAAATGAATGAATACCGAGATCGTGTAGTTTTACCTGCTGCAACAAATAAGTATGGCAAATATATTGGAACCTGTGTGAAAGTTTTGGATATGACTGGTTTAAGGCTCTCAGCACTTAATCATATTAAGCTTTTGACTGTTATTTCCACTATCGATGACTTGAATTATCCAGAAAAGACGGATACATACTATATTGTCAATGCCCCATACATATTTTCAGCATGTTGGAAGGTGGTAAAACCTCTTTTGCAAGAAAGGACTAGGAGGAAAATCCAGGTTCTTCAAGGTTGTGGGAAAGATGAATTACTCAAAATCATGGATTATTCGTCCCTCCCACATTTTTGTAGAAAACAGGGCTCTGGATCATCTCGGAATTCAGAGAATGGACATACTAGTAATTGTTTCTCGTTGGACCATGCTTTCCATCAAGAGCTCTACAATTTTGTCAAGCAGCAAGCTATTCAAACGGATCGTGTTGCACCAATCAAACAGGGATCCTTCCACGTCAATTTCCCTGATCCAAACCCTGAAGACGCAGAGATTGCGAAAACCATAGAGTCTGAGTTCCACAAGTATGGAAACCACAACGGCCTCAACGGCCTCACCAAGTCACTAAGTGGCCTAAGATTTAACGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

340

Amino Acids

38.55

Weight (kDa)

8.09

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	8 - 59	1.7e-12	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	89 - 241	8.6e-19	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55840 AT1G55840
fragaria_vesca	FvH4_3g42730 FvH4_3g42730 FvH4_3g42730 FvH4_3g42730
malus_domestica	MD03G1029400.v1.1 MD11G1032700.v1.1
prunus_persica	Prupe.6G025500_v2.0.a1
pyrus_communis	pycom03g02430 pycom11g02840
rosa_chinensis	RchiOBHm_Chr5g0076461
rosa_laevigata	RLG00000036621
rosa_multiflora	Rmu_sc0000369.1_g000015 Rmu_sc0019498.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005440
rosa_rugosa	Rorug05G0448200 Rorug05G0448300.1
rosa_samantha	Rh5BG524700 Rh5DG536400
rosa_wichuraiana	Rw5G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AciI	CCGC	2 cut(s)	65, 121
AclWI	GGATC	6 cut(s)	8, 751, 858, 870, 883, 893
AcsI	RAATTY	1 cut(s)	754
AcuI	CTGAAG	2 cut(s)	89, 930
AdeI	CACNNNGTG	1 cut(s)	998
AfaI	GTAC	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	544, 665, 845
AhlI	ACTAGT	1 cut(s)	773
AjiI	CACGTC	1 cut(s)	886
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	5 cut(s)	271, 350, 511, 814, 839
AluI	AGCT	5 cut(s)	271, 350, 511, 814, 839
Alw21I	GWGCWC	2 cut(s)	93, 816
Alw26I	GTCTC	1 cut(s)	104
Alw44I	GTGCAC	1 cut(s)	89
AlwI	GGATC	6 cut(s)	8, 751, 858, 870, 883, 893
AoxI	GGCC	3 cut(s)	970, 979, 1000
ApaLI	GTGCAC	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	419, 832
ApoI	RAATTY	1 cut(s)	754
AspS9I	GGNCC	1 cut(s)	793
AsuHPI	GGTGA	1 cut(s)	976
AvaII	GGWCC	1 cut(s)	793
BaeGI	GKGCMC	1 cut(s)	93
BamHI	GGATCC	1 cut(s)	875
BanII	GRGCYC	3 cut(s)	333, 740, 816
BbsI	GAAGAC	3 cut(s)	80, 296, 918
Bbv12I	GWGCWC	2 cut(s)	93, 816
BbvI	GCAGC	2 cut(s)	406, 844
BccI	CCATC	1 cut(s)	813
BceAI	ACGGC	2 cut(s)	985, 994
BciT130I	CCWGG	1 cut(s)	656
BciVI	GTATCC	2 cut(s)	111, 556
BcoDI	GTCTC	1 cut(s)	104
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	2 cut(s)	642, 774
BfuAI	ACCTGC	1 cut(s)	424
BfuI	GTATCC	2 cut(s)	111, 556
BglI	GCCNNNNNGGC	1 cut(s)	978
BisI	GCNGC	2 cut(s)	420, 833
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	2 cut(s)	421, 834
Bme1390I	CCNGG	1 cut(s)	656
Bme18I	GGWCC	1 cut(s)	793
BmgBI	CACGTC	1 cut(s)	886
BmgT120I	GGNCC	1 cut(s)	793
BmiI	GGNNCC	2 cut(s)	451, 877
BmrFI	CCNGG	1 cut(s)	656
BpiI	GAAGAC	3 cut(s)	80, 296, 918
Bpu1102I	GCTNAGC	1 cut(s)	332
Bsa29I	ATCGAT	1 cut(s)	534
BsaJI	CCNNGG	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	146, 481
Bse3DI	GCAATG	2 cut(s)	191, 312
BseBI	CCWGG	1 cut(s)	656
BseCI	ATCGAT	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	2 cut(s)	231, 378
BseMI	GCAATG	2 cut(s)	191, 312
BseMII	CTCAG	4 cut(s)	281, 346, 504, 933
BseNI	ACTGG	2 cut(s)	146, 481
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	406, 844
BshFI	GGCC	3 cut(s)	972, 981, 1002
BshVI	ATCGAT	1 cut(s)	534
BsiHKAI	GWGCWC	2 cut(s)	93, 816
BslFI	GGGAC	2 cut(s)	152, 694
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	152, 694
BsnI	GGCC	3 cut(s)	972, 981, 1002
Bsp1286I	GDGCHC	4 cut(s)	93, 333, 740, 816
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	7 cut(s)	13, 24, 400, 743, 850, 875, 898
Bsp1720I	GCTNAGC	1 cut(s)	332
BspACI	CCGC	2 cut(s)	65, 121
BspANI	GGCC	3 cut(s)	972, 981, 1002
BspCNI	CTCAG	4 cut(s)	280, 345, 503, 934
BspDI	ATCGAT	1 cut(s)	534
BspLI	GGNNCC	2 cut(s)	451, 877
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	6 cut(s)	8, 751, 858, 870, 883, 893
BsrDI	GCAATG	2 cut(s)	191, 312
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	146, 481
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	7 cut(s)	13, 24, 400, 743, 850, 875, 898
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	2 cut(s)	179, 520
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstAUI	TGTACA	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	837
BstDEI	CTNAG	6 cut(s)	267, 332, 490, 942, 995, 1004
BstF5I	GGATG	2 cut(s)	231, 378
BstKTI	GATC	7 cut(s)	16, 27, 403, 746, 853, 878, 901
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	7 cut(s)	13, 24, 400, 743, 850, 875, 898
BstMWI	GCNNNNNNNGC	2 cut(s)	923, 978
BstNI	CCWGG	1 cut(s)	656
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	406, 844
BstV2I	GAAGAC	3 cut(s)	80, 296, 918
BstX2I	RGATCY	1 cut(s)	875
BstXI	CCANNNNNNTGG	1 cut(s)	956
BstYI	RGATCY	1 cut(s)	875
Bsu15I	ATCGAT	1 cut(s)	534
BsuI	GTATCC	2 cut(s)	111, 556
BsuRI	GGCC	3 cut(s)	972, 981, 1002
BsuTUI	ATCGAT	1 cut(s)	534
BtrI	CACGTC	1 cut(s)	886
BtsCI	GGATG	2 cut(s)	231, 378
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	837
Cfr13I	GGNCC	1 cut(s)	793
ClaI	ATCGAT	1 cut(s)	534
CseI	GACGC	1 cut(s)	923
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	603, 697, 797
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	6 cut(s)	267, 332, 490, 942, 995, 1004
DpnI	GATC	7 cut(s)	15, 26, 402, 745, 852, 877, 900
DpnII	GATC	7 cut(s)	13, 24, 400, 743, 850, 875, 898
DraIII	CACNNNGTG	1 cut(s)	998
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	3 cut(s)	333, 740, 816
Eco47I	GGWCC	1 cut(s)	793
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	2 cut(s)	89, 930
EcoICRI	GAGCTC	1 cut(s)	814
EcoRI	GAATTC	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	3 cut(s)	333, 740, 816
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	3 cut(s)	606, 700, 800
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	2 cut(s)	152, 694
FatI	CATG	3 cut(s)	602, 696, 796
FauNDI	CATATG	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	420, 833
FokI	GGATG	2 cut(s)	218, 365
FriOI	GRGCYC	3 cut(s)	333, 740, 816
Fsp4HI	GCNGC	2 cut(s)	420, 833
FspBI	CTAG	2 cut(s)	642, 774
GluI	GCNGC	2 cut(s)	420, 833
HaeIII	GGCC	3 cut(s)	972, 981, 1002
HgaI	GACGC	1 cut(s)	923
Hin1II	CATG	3 cut(s)	606, 700, 800
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	2 cut(s)	348, 509
HinfI	GANTC	2 cut(s)	263, 938
HphI	GGTGA	1 cut(s)	976
Hpy166II	GTNNAC	2 cut(s)	91, 175
Hpy188I	TCNGA	3 cut(s)	753, 760, 943
Hpy188III	TCNNGA	6 cut(s)	11, 17, 551, 741, 809, 1020
Hpy8I	GTNNAC	2 cut(s)	91, 175
HpyAV	CCTTC	2 cut(s)	604, 889
HpyCH4III	ACNGT	2 cut(s)	179, 520
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	5 cut(s)	91, 184, 422, 631, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	923, 978
HpyF3I	CTNAG	6 cut(s)	267, 332, 490, 942, 995, 1004
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	3 cut(s)	606, 700, 800
Kzo9I	GATC	7 cut(s)	13, 24, 400, 743, 850, 875, 898
Lsp1109I	GCAGC	2 cut(s)	406, 844
MaeI	CTAG	2 cut(s)	642, 774
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	2 cut(s)	287, 990
MalI	GATC	7 cut(s)	15, 26, 402, 745, 852, 877, 900
MboI	GATC	7 cut(s)	13, 24, 400, 743, 850, 875, 898
MboII	GAAGA	6 cut(s)	62, 82, 85, 296, 653, 923
MflI	RGATCY	1 cut(s)	875
MhlI	GDGCHC	4 cut(s)	93, 333, 740, 816
MluCI	AATT	8 cut(s)	204, 358, 544, 683, 754, 778, 820, 889
MlyI	GAGTC	1 cut(s)	947
MmeI	TCCRAC	2 cut(s)	587, 771
MnlI	CCTC	8 cut(s)	129, 183, 292, 633, 639, 722, 983, 992
MseI	TTAA	6 cut(s)	44, 129, 482, 498, 507, 1011
MslI	CAYNNNNRTG	2 cut(s)	383, 954
MspA1I	CMGCKG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	656
MvaI	CCWGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	923, 978
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	7 cut(s)	13, 24, 400, 743, 850, 875, 898
NlaIII	CATG	3 cut(s)	606, 700, 800
NlaIV	GGNNCC	2 cut(s)	451, 877
NmuCI	GTSAC	1 cut(s)	990
NspI	RCATGY	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	421, 834
PleI	GAGTC	1 cut(s)	946
PpsI	GAGTC	1 cut(s)	946
Psp124BI	GAGCTC	1 cut(s)	816
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	451, 877
PspPI	GGNCC	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	875
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	2 cut(s)	383, 954
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	6 cut(s)	44, 129, 482, 498, 507, 1011
SatI	GCNGC	2 cut(s)	420, 833
Sau3AI	GATC	7 cut(s)	13, 24, 400, 743, 850, 875, 898
Sau96I	GGNCC	1 cut(s)	793
SchI	GAGTC	1 cut(s)	947
ScrFI	CCNGG	1 cut(s)	656
SduI	GDGCHC	4 cut(s)	93, 333, 740, 816
SfiI	GGCCNNNNNGGCC	1 cut(s)	978
SinI	GGWCC	1 cut(s)	793
SmiMI	CAYNNNNRTG	2 cut(s)	383, 954
SpeI	ACTAGT	1 cut(s)	773
Sse9I	AATT	8 cut(s)	204, 358, 544, 683, 754, 778, 820, 889
SsiI	CCGC	2 cut(s)	65, 121
SspMI	CTAG	2 cut(s)	642, 774
SstI	GAGCTC	1 cut(s)	816
StyD4I	CCNGG	1 cut(s)	654
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	179, 520
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	1 cut(s)	534
TasI	AATT	8 cut(s)	204, 358, 544, 683, 754, 778, 820, 889
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	6 cut(s)	44, 129, 482, 498, 507, 1011
Tru9I	TTAA	6 cut(s)	44, 129, 482, 498, 507, 1011
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	990
TseI	GCWGC	2 cut(s)	419, 832
Tsp45I	GTSAC	1 cut(s)	990
TspDTI	ATGAA	4 cut(s)	75, 401, 405, 696
TspGWI	ACGGA	2 cut(s)	575, 863
TspRI	CASTG	1 cut(s)	261
VneI	GTGCAC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	793
XapI	RAATTY	1 cut(s)	754
XceI	RCATGY	1 cut(s)	606
XspI	CTAG	2 cut(s)	642, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.