TATA-binding protein-associated factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54280 AT3G54280 |
| fragaria_vesca | FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 |
| malus_domestica | MD03G1000900.v1.1 MD11G1000100.v1.1 |
| prunus_persica | Prupe.6G000100_v2.0.a1 |
| pyrus_communis | pycom03g00100 pycom11g00010 |
| rosa_chinensis | RchiOBHm_Chr5g0084181 |
| rosa_laevigata | RLG00000037090 |
| rosa_multiflora | Rmu_sc0005537.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00000450 |
| rosa_rugosa | Rorug05G0489600 Rorug05G0489700 |
| rosa_samantha | Rh5AG542400 Rh5BG568400 Rh5CG590000 Rh5DG576400 |
| rosa_wichuraiana | Rw5G050450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3752 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 5705 |
| Acc36I | ACCTGC | 3 cut(s) | 1216, 1252, 5002 |
| Acc65I | GGTACC | 1 cut(s) | 4090 |
| AccB1I | GGYRCC | 4 cut(s) | 347, 2095, 4090, 5456 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 625, 732, 4229 |
| AccI | GTMKAC | 2 cut(s) | 59, 1645 |
| AccII | CGCG | 1 cut(s) | 22 |
| AclI | AACGTT | 2 cut(s) | 4390, 5599 |
| AcoI | YGGCCR | 2 cut(s) | 1698, 3948 |
| AcsI | RAATTY | 8 cut(s) | 969, 1121, 1457, 1659, 2269, 2295, 3036, 5993 |
| AcuI | CTGAAG | 7 cut(s) | 1267, 3231, 4995, 5231, 5387, 5472, 6108 |
| AcyI | GRCGYC | 3 cut(s) | 490, 2751, 5433 |
| AfeI | AGCGCT | 1 cut(s) | 5244 |
| AflIII | ACRYGT | 4 cut(s) | 915, 3440, 4747, 5143 |
| AgeI | ACCGGT | 1 cut(s) | 1327 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 55 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3110, 3142 |
| AleI | CACNNNNGTG | 1 cut(s) | 2104 |
| Alw21I | GWGCWC | 4 cut(s) | 769, 1564, 4987, 5764 |
| Alw26I | GTCTC | 9 cut(s) | 29, 1528, 2161, 3232, 3452, 4897, 5324, 5350, 5523 |
| Alw44I | GTGCAC | 1 cut(s) | 1560 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 174, 1372, 1796, 4075 |
| Ama87I | CYCGRG | 5 cut(s) | 408, 592, 4249, 4883, 5217 |
| Aor51HI | AGCGCT | 1 cut(s) | 5244 |
| ApaLI | GTGCAC | 1 cut(s) | 1560 |
| ApoI | RAATTY | 8 cut(s) | 969, 1121, 1457, 1659, 2269, 2295, 3036, 5993 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 5978, 6010 |
| AseI | ATTAAT | 2 cut(s) | 3072, 5880 |
| AsiGI | ACCGGT | 1 cut(s) | 1327 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1461, 2059 |
| Asp718I | GGTACC | 1 cut(s) | 4090 |
| AspLEI | GCGC | 2 cut(s) | 397, 5245 |
| AspS9I | GGNCC | 5 cut(s) | 4, 1768, 3525, 4551, 4860 |
| AsuC2I | CCSGG | 2 cut(s) | 4884, 4885 |
| AsuHPI | GGTGA | 6 cut(s) | 1147, 1331, 1876, 2255, 5205, 5303 |
| AsuII | TTCGAA | 1 cut(s) | 2210 |
| AsuNHI | GCTAGC | 1 cut(s) | 1193 |
| AvaI | CYCGRG | 5 cut(s) | 408, 592, 4249, 4883, 5217 |
| AvaII | GGWCC | 3 cut(s) | 1768, 3525, 4860 |
| AxyI | CCTNAGG | 2 cut(s) | 120, 4343 |
| BaeGI | GKGCMC | 1 cut(s) | 1564 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 5955, 5988 |
| BalI | TGGCCA | 1 cut(s) | 3950 |
| BamHI | GGATCC | 3 cut(s) | 3448, 3781, 4948 |
| BanI | GGYRCC | 4 cut(s) | 347, 2095, 4090, 5456 |
| BanII | GRGCYC | 3 cut(s) | 794, 2555, 5105 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 1237, 1269, 2685, 2717, 4182, 4214 |
| BauI | CACGAG | 1 cut(s) | 4209 |
| BbsI | GAAGAC | 6 cut(s) | 312, 558, 2373, 3582, 4625, 5701 |
| Bbv12I | GWGCWC | 4 cut(s) | 769, 1564, 4987, 5764 |
| BbvCI | CCTCAGC | 2 cut(s) | 3354, 6101 |
| BceAI | ACGGC | 3 cut(s) | 477, 1685, 5444 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2409, 2443 |
| BciVI | GTATCC | 2 cut(s) | 1323, 5983 |
| BclI | TGATCA | 5 cut(s) | 838, 1528, 2965, 3502, 4144 |
| BcnI | CCSGG | 2 cut(s) | 4884, 4885 |
| BcoDI | GTCTC | 9 cut(s) | 29, 1528, 2161, 3232, 3452, 4897, 5324, 5350, 5523 |
| BfmI | CTRYAG | 5 cut(s) | 1797, 3471, 3486, 3738, 3822 |
| BfoI | RGCGCY | 1 cut(s) | 5246 |
| BfuAI | ACCTGC | 3 cut(s) | 1216, 1252, 5002 |
| BfuI | GTATCC | 2 cut(s) | 1323, 5983 |
| BglII | AGATCT | 2 cut(s) | 2350, 4243 |
| BlpI | GCTNAGC | 1 cut(s) | 4960 |
| BmcAI | AGTACT | 1 cut(s) | 5252 |
| Bme18I | GGWCC | 3 cut(s) | 1768, 3525, 4860 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 55 |
| BmeT110I | CYCGRG | 5 cut(s) | 408, 592, 4249, 4883, 5217 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 1768, 3525, 4551, 4860 |
| BmrI | ACTGGG | 5 cut(s) | 63, 184, 2036, 4085, 4558 |
| BmtI | GCTAGC | 1 cut(s) | 1197 |
| BmuI | ACTGGG | 5 cut(s) | 63, 184, 2036, 4085, 4558 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4425 |
| BpiI | GAAGAC | 6 cut(s) | 312, 558, 2373, 3582, 4625, 5701 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 451, 483, 1346, 1378 |
| BpmI | CTGGAG | 5 cut(s) | 2027, 2595, 2850, 4612, 5361 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3354, 6101 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4960 |
| Bpu14I | TTCGAA | 1 cut(s) | 2210 |
| BpuEI | CTTGAG | 1 cut(s) | 1036 |
| BpuMI | CCSGG | 2 cut(s) | 4884, 4885 |
| BsaAI | YACGTR | 2 cut(s) | 611, 1550 |
| BsaBI | GATNNNNATC | 1 cut(s) | 4143 |
| BsaHI | GRCGYC | 3 cut(s) | 490, 2751, 5433 |
| BsaJI | CCNNGG | 9 cut(s) | 574, 671, 726, 943, 2239, 4203, 4883, 4944, 4965 |
| BsaWI | WCCGGW | 1 cut(s) | 1327 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1292, 1322, 1506, 1536 |
| Bse118I | RCCGGY | 1 cut(s) | 1327 |
| Bse21I | CCTNAGG | 2 cut(s) | 120, 4343 |
| Bse3DI | GCAATG | 7 cut(s) | 339, 1850, 5000, 5276, 5333, 5355, 5757 |
| Bse8I | GATNNNNATC | 1 cut(s) | 4143 |
| BseDI | CCNNGG | 9 cut(s) | 574, 671, 726, 943, 2239, 4203, 4883, 4944, 4965 |
| BseJI | GATNNNNATC | 1 cut(s) | 4143 |
| BseMI | GCAATG | 7 cut(s) | 339, 1850, 5000, 5276, 5333, 5355, 5757 |
| BseRI | GAGGAG | 2 cut(s) | 3220, 4360 |
| BseSI | GKGCMC | 1 cut(s) | 1564 |
| BseYI | CCCAGC | 4 cut(s) | 6, 284, 3786, 5674 |
| BsgI | GTGCAG | 3 cut(s) | 2634, 4062, 4278 |
| Bsh1236I | CGCG | 1 cut(s) | 22 |
| BshNI | GGYRCC | 4 cut(s) | 347, 2095, 4090, 5456 |
| BshTI | ACCGGT | 1 cut(s) | 1327 |
| BsiHKAI | GWGCWC | 4 cut(s) | 769, 1564, 4987, 5764 |
| BsiHKCI | CYCGRG | 5 cut(s) | 408, 592, 4249, 4883, 5217 |
| BsiSI | CCGG | 3 cut(s) | 996, 1328, 4884 |
| BsiWI | CGTACG | 1 cut(s) | 1546 |
| BslFI | GGGAC | 5 cut(s) | 191, 1892, 3538, 4086, 4846 |
| BsmAI | GTCTC | 9 cut(s) | 29, 1528, 2161, 3232, 3452, 4897, 5324, 5350, 5523 |
| BsmBI | CGTCTC | 1 cut(s) | 29 |
| BsmFI | GGGAC | 5 cut(s) | 191, 1892, 3538, 4086, 4846 |
| BsmI | GAATGC | 7 cut(s) | 261, 1435, 1855, 2206, 3898, 4765, 5896 |
| BsoBI | CYCGRG | 5 cut(s) | 408, 592, 4249, 4883, 5217 |
| Bsp119I | TTCGAA | 1 cut(s) | 2210 |
| Bsp1286I | GDGCHC | 7 cut(s) | 769, 794, 1564, 2555, 4987, 5105, 5764 |
| Bsp1407I | TGTACA | 2 cut(s) | 1334, 5107 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4960 |
| Bsp19I | CCATGG | 2 cut(s) | 574, 943 |
| BspFNI | CGCG | 1 cut(s) | 22 |
| BspHI | TCATGA | 2 cut(s) | 841, 1609 |
| BspMAI | CTGCAG | 3 cut(s) | 1801, 3475, 3742 |
| BspMI | ACCTGC | 3 cut(s) | 1216, 1252, 5002 |
| BspOI | GCTAGC | 1 cut(s) | 1197 |
| BspQI | GCTCTTC | 1 cut(s) | 4492 |
| BspT104I | TTCGAA | 1 cut(s) | 2210 |
| BspT107I | GGYRCC | 4 cut(s) | 347, 2095, 4090, 5456 |
| BsrDI | GCAATG | 7 cut(s) | 339, 1850, 5000, 5276, 5333, 5355, 5757 |
| BsrFI | RCCGGY | 1 cut(s) | 1327 |
| BsrGI | TGTACA | 2 cut(s) | 1334, 5107 |
| BssAI | RCCGGY | 1 cut(s) | 1327 |
| BssECI | CCNNGG | 9 cut(s) | 574, 671, 726, 943, 2239, 4203, 4883, 4944, 4965 |
| BssNI | GRCGYC | 3 cut(s) | 490, 2751, 5433 |
| BssSI | CACGAG | 1 cut(s) | 4209 |
| BssT1I | CCWWGG | 5 cut(s) | 574, 671, 726, 943, 4965 |
| Bst2BI | CACGAG | 1 cut(s) | 4209 |
| Bst4CI | ACNGT | 8 cut(s) | 1035, 1508, 2706, 2992, 3581, 4175, 4908, 5130 |
| BstACI | GRCGYC | 3 cut(s) | 490, 2751, 5433 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1037, 1796, 4265, 5017 |
| BstAUI | TGTACA | 2 cut(s) | 1334, 5107 |
| BstBAI | YACGTR | 2 cut(s) | 611, 1550 |
| BstBI | TTCGAA | 1 cut(s) | 2210 |
| BstDSI | CCRYGG | 2 cut(s) | 574, 943 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 355, 2910 |
| BstFNI | CGCG | 1 cut(s) | 22 |
| BstH2I | RGCGCY | 1 cut(s) | 5246 |
| BstHHI | GCGC | 2 cut(s) | 397, 5245 |
| BstMAI | GTCTC | 9 cut(s) | 29, 1528, 2161, 3232, 3452, 4897, 5324, 5350, 5523 |
| BstNSI | RCATGY | 7 cut(s) | 919, 1752, 3221, 3444, 4051, 4751, 5147 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4425 |
| BstSFI | CTRYAG | 5 cut(s) | 1797, 3471, 3486, 3738, 3822 |
| BstSLI | GKGCMC | 1 cut(s) | 1564 |
| BstUI | CGCG | 1 cut(s) | 22 |
| BstV2I | GAAGAC | 6 cut(s) | 312, 558, 2373, 3582, 4625, 5701 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 581, 2106, 4607 |
| Bsu36I | CCTNAGG | 2 cut(s) | 120, 4343 |
| BsuI | GTATCC | 2 cut(s) | 1323, 5983 |
| BtgI | CCRYGG | 2 cut(s) | 574, 943 |
| BtsI | GCAGTG | 3 cut(s) | 1646, 1927, 4480 |
| BveI | ACCTGC | 3 cut(s) | 1216, 1252, 5002 |
| CaiI | CAGNNNCTG | 4 cut(s) | 174, 1372, 1796, 4075 |
| CciI | TCATGA | 2 cut(s) | 841, 1609 |
| CfoI | GCGC | 2 cut(s) | 397, 5245 |
| Cfr10I | RCCGGY | 1 cut(s) | 1327 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 1768, 3525, 4551, 4860 |
| Cfr9I | CCCGGG | 1 cut(s) | 4883 |
| CseI | GACGC | 5 cut(s) | 11, 498, 2740, 2757, 5422 |
| CspAI | ACCGGT | 1 cut(s) | 1327 |
| DraI | TTTAAA | 2 cut(s) | 2476, 3849 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 5705 |
| DriI | GACNNNNNGTC | 1 cut(s) | 55 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 5705 |
| EaeI | YGGCCR | 2 cut(s) | 1698, 3948 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 55 |
| Eco130I | CCWWGG | 5 cut(s) | 574, 671, 726, 943, 4965 |
| Eco147I | AGGCCT | 2 cut(s) | 664, 3397 |
| Eco24I | GRGCYC | 3 cut(s) | 794, 2555, 5105 |
| Eco32I | GATATC | 4 cut(s) | 427, 1216, 3191, 5160 |
| Eco47I | GGWCC | 3 cut(s) | 1768, 3525, 4860 |
| Eco47III | AGCGCT | 1 cut(s) | 5244 |
| Eco57I | CTGAAG | 7 cut(s) | 1267, 3231, 4995, 5231, 5387, 5472, 6108 |
| Eco81I | CCTNAGG | 2 cut(s) | 120, 4343 |
| Eco88I | CYCGRG | 5 cut(s) | 408, 592, 4249, 4883, 5217 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 355, 2910 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1768 |
| EcoRV | GATATC | 4 cut(s) | 427, 1216, 3191, 5160 |
| EcoT14I | CCWWGG | 5 cut(s) | 574, 671, 726, 943, 4965 |
| EcoT22I | ATGCAT | 3 cut(s) | 1596, 3881, 3938 |
| EcoT38I | GRGCYC | 3 cut(s) | 794, 2555, 5105 |
| ErhI | CCWWGG | 5 cut(s) | 574, 671, 726, 943, 4965 |
| Esp3I | CGTCTC | 1 cut(s) | 29 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2904, 2936, 3498, 3530, 6030, 6062 |
| FaqI | GGGAC | 5 cut(s) | 191, 1892, 3538, 4086, 4846 |
| FauI | CCCGC | 1 cut(s) | 6044 |
| FauNDI | CATATG | 4 cut(s) | 2410, 3558, 4675, 5547 |
| FbaI | TGATCA | 5 cut(s) | 838, 1528, 2965, 3502, 4144 |
| FblI | GTMKAC | 2 cut(s) | 59, 1645 |
| FriOI | GRGCYC | 3 cut(s) | 794, 2555, 5105 |
| GlaI | GCGC | 2 cut(s) | 396, 5244 |
| GsaI | CCCAGC | 4 cut(s) | 10, 288, 3790, 5678 |
| GsuI | CTGGAG | 5 cut(s) | 2027, 2595, 2850, 4612, 5361 |
| HaeII | RGCGCY | 1 cut(s) | 5246 |
| HapII | CCGG | 3 cut(s) | 996, 1328, 4884 |
| HgaI | GACGC | 5 cut(s) | 11, 498, 2740, 2757, 5422 |
| HhaI | GCGC | 2 cut(s) | 397, 5245 |
| Hin1I | GRCGYC | 3 cut(s) | 490, 2751, 5433 |
| Hin6I | GCGC | 2 cut(s) | 395, 5243 |
| HinP1I | GCGC | 2 cut(s) | 395, 5243 |
| HincII | GTYRAC | 2 cut(s) | 60, 1274 |
| HindII | GTYRAC | 2 cut(s) | 60, 1274 |
| HindIII | AAGCTT | 7 cut(s) | 2504, 3671, 4397, 4712, 5297, 5616, 6119 |
| HpaII | CCGG | 3 cut(s) | 996, 1328, 4884 |
| HphI | GGTGA | 6 cut(s) | 1147, 1331, 1876, 2255, 5205, 5303 |
| Hpy166II | GTNNAC | 9 cut(s) | 60, 1274, 1562, 1646, 2846, 2918, 3027, 3061, 5141 |
| Hpy8I | GTNNAC | 9 cut(s) | 60, 1274, 1562, 1646, 2846, 2918, 3027, 3061, 5141 |
| Hpy99I | CGWCG | 3 cut(s) | 492, 5037, 5438 |
| HpyCH4III | ACNGT | 8 cut(s) | 1035, 1508, 2706, 2992, 3581, 4175, 4908, 5130 |
| HpyCH4IV | ACGT | 7 cut(s) | 610, 1549, 2738, 3817, 4390, 4470, 5599 |
| HpySE526I | ACGT | 7 cut(s) | 610, 1549, 2738, 3817, 4390, 4470, 5599 |
| Hsp92I | GRCGYC | 3 cut(s) | 490, 2751, 5433 |
| HspAI | GCGC | 2 cut(s) | 395, 5243 |
| KpnI | GGTACC | 1 cut(s) | 4094 |
| Ksp22I | TGATCA | 5 cut(s) | 838, 1528, 2965, 3502, 4144 |
| LguI | GCTCTTC | 1 cut(s) | 4492 |
| MaeII | ACGT | 7 cut(s) | 610, 1549, 2738, 3817, 4390, 4470, 5599 |
| MfeI | CAATTG | 6 cut(s) | 204, 213, 1113, 4793, 5637, 5921 |
| MhlI | GDGCHC | 7 cut(s) | 769, 794, 1564, 2555, 4987, 5105, 5764 |
| MlsI | TGGCCA | 1 cut(s) | 3950 |
| MluNI | TGGCCA | 1 cut(s) | 3950 |
| MlyI | GAGTC | 7 cut(s) | 2525, 3005, 3164, 5192, 5300, 5352, 5490 |
| MmeI | TCCRAC | 2 cut(s) | 1622, 2853 |
| Mox20I | TGGCCA | 1 cut(s) | 3950 |
| Mph1103I | ATGCAT | 3 cut(s) | 1596, 3881, 3938 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1461, 2059 |
| MscI | TGGCCA | 1 cut(s) | 3950 |
| Msp20I | TGGCCA | 1 cut(s) | 3950 |
| MspA1I | CMGCKG | 2 cut(s) | 83, 3353 |
| MspI | CCGG | 3 cut(s) | 996, 1328, 4884 |
| MunI | CAATTG | 6 cut(s) | 204, 213, 1113, 4793, 5637, 5921 |
| Mva1269I | GAATGC | 7 cut(s) | 261, 1435, 1855, 2206, 3898, 4765, 5896 |
| MvnI | CGCG | 1 cut(s) | 22 |
| NciI | CCSGG | 2 cut(s) | 4884, 4885 |
| NcoI | CCATGG | 2 cut(s) | 574, 943 |
| NdeI | CATATG | 4 cut(s) | 2410, 3558, 4675, 5547 |
| NheI | GCTAGC | 1 cut(s) | 1193 |
| NmeAIII | GCCGAG | 1 cut(s) | 67 |
| NmuCI | GTSAC | 8 cut(s) | 1497, 1664, 2243, 4015, 4165, 4336, 5291, 6075 |
| NsiI | ATGCAT | 3 cut(s) | 1596, 3881, 3938 |
| NspI | RCATGY | 7 cut(s) | 919, 1752, 3221, 3444, 4051, 4751, 5147 |
| NspV | TTCGAA | 1 cut(s) | 2210 |
| OliI | CACNNNNGTG | 1 cut(s) | 2104 |
| PaeI | GCATGC | 1 cut(s) | 4051 |
| PaeR7I | CTCGAG | 2 cut(s) | 408, 4249 |
| PagI | TCATGA | 2 cut(s) | 841, 1609 |
| PceI | AGGCCT | 2 cut(s) | 664, 3397 |
| PciI | ACATGT | 4 cut(s) | 915, 3440, 4747, 5143 |
| PciSI | GCTCTTC | 1 cut(s) | 4492 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 5994 |
| PctI | GAATGC | 7 cut(s) | 261, 1435, 1855, 2206, 3898, 4765, 5896 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1461, 2059 |
| Pfl23II | CGTACG | 1 cut(s) | 1546 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 625, 732, 4229 |
| PfoI | TCCNGGA | 1 cut(s) | 5412 |
| PinAI | ACCGGT | 1 cut(s) | 1327 |
| PleI | GAGTC | 7 cut(s) | 2524, 3004, 3163, 5191, 5300, 5351, 5489 |
| PpsI | GAGTC | 7 cut(s) | 2524, 3004, 3163, 5191, 5300, 5351, 5489 |
| Ppu21I | YACGTR | 2 cut(s) | 611, 1550 |
| PpuMI | RGGWCCY | 1 cut(s) | 1768 |
| PscI | ACATGT | 4 cut(s) | 915, 3440, 4747, 5143 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4425 |
| PshBI | ATTAAT | 2 cut(s) | 3072, 5880 |
| PsiI | TTATAA | 1 cut(s) | 3752 |
| Psp1406I | AACGTT | 2 cut(s) | 4390, 5599 |
| Psp5II | RGGWCCY | 1 cut(s) | 1768 |
| PspFI | CCCAGC | 4 cut(s) | 6, 284, 3786, 5674 |
| PspLI | CGTACG | 1 cut(s) | 1546 |
| PspPI | GGNCC | 5 cut(s) | 4, 1768, 3525, 4551, 4860 |
| PspPPI | RGGWCCY | 1 cut(s) | 1768 |
| PstI | CTGCAG | 3 cut(s) | 1801, 3475, 3742 |
| PstNI | CAGNNNCTG | 4 cut(s) | 174, 1372, 1796, 4075 |
| PvuII | CAGCTG | 2 cut(s) | 83, 3353 |
| SalI | GTCGAC | 1 cut(s) | 58 |
| SapI | GCTCTTC | 1 cut(s) | 4492 |
| Sau96I | GGNCC | 5 cut(s) | 4, 1768, 3525, 4551, 4860 |
| ScaI | AGTACT | 1 cut(s) | 5252 |
| SchI | GAGTC | 7 cut(s) | 2525, 3005, 3164, 5192, 5300, 5352, 5490 |
| SduI | GDGCHC | 7 cut(s) | 769, 794, 1564, 2555, 4987, 5105, 5764 |
| SfcI | CTRYAG | 5 cut(s) | 1797, 3471, 3486, 3738, 3822 |
| Sfr274I | CTCGAG | 2 cut(s) | 408, 4249 |
| SfuI | TTCGAA | 1 cut(s) | 2210 |
| SinI | GGWCC | 3 cut(s) | 1768, 3525, 4860 |
| SlaI | CTCGAG | 2 cut(s) | 408, 4249 |
| SmaI | CCCGGG | 1 cut(s) | 4885 |
| SmlI | CTYRAG | 3 cut(s) | 408, 1015, 4249 |
| SmoI | CTYRAG | 3 cut(s) | 408, 1015, 4249 |
| SphI | GCATGC | 1 cut(s) | 4051 |
| SseBI | AGGCCT | 2 cut(s) | 664, 3397 |
| SspI | AATATT | 1 cut(s) | 3427 |
| StuI | AGGCCT | 2 cut(s) | 664, 3397 |
| StyI | CCWWGG | 5 cut(s) | 574, 671, 726, 943, 4965 |
| TaaI | ACNGT | 8 cut(s) | 1035, 1508, 2706, 2992, 3581, 4175, 4908, 5130 |
| TaiI | ACGT | 7 cut(s) | 613, 1552, 2741, 3820, 4393, 4473, 5602 |
| TatI | WGTACW | 5 cut(s) | 1334, 4322, 4569, 5107, 5250 |
| TauI | GCSGC | 3 cut(s) | 299, 3245, 5572 |
| TseFI | GTSAC | 8 cut(s) | 1497, 1664, 2243, 4015, 4165, 4336, 5291, 6075 |
| Tsp45I | GTSAC | 8 cut(s) | 1497, 1664, 2243, 4015, 4165, 4336, 5291, 6075 |
| TspGWI | ACGGA | 5 cut(s) | 2129, 3713, 4573, 4774, 6003 |
| TspMI | CCCGGG | 1 cut(s) | 4883 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 625, 732, 4229 |
| VneI | GTGCAC | 1 cut(s) | 1560 |
| VpaK11BI | GGWCC | 3 cut(s) | 1768, 3525, 4860 |
| VspI | ATTAAT | 2 cut(s) | 3072, 5880 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 355, 2910 |
| XapI | RAATTY | 8 cut(s) | 969, 1121, 1457, 1659, 2269, 2295, 3036, 5993 |
| XbaI | TCTAGA | 3 cut(s) | 2681, 3929, 4276 |
| XceI | RCATGY | 7 cut(s) | 919, 1752, 3221, 3444, 4051, 4751, 5147 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2606, 4003, 4919 |
| XhoI | CTCGAG | 2 cut(s) | 408, 4249 |
| XmaI | CCCGGG | 1 cut(s) | 4883 |
| XmiI | GTMKAC | 2 cut(s) | 59, 1645 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1461, 2059 |
| ZrmI | AGTACT | 1 cut(s) | 5252 |
| Zsp2I | ATGCAT | 3 cut(s) | 1596, 3881, 3938 |