TATA-binding protein-associated factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54280 AT3G54280 |
| fragaria_vesca | FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 |
| malus_domestica | MD03G1000900.v1.1 MD11G1000100.v1.1 |
| prunus_persica | Prupe.6G000100_v2.0.a1 |
| pyrus_communis | pycom03g00100 pycom11g00010 |
| rosa_chinensis | RchiOBHm_Chr5g0084181 |
| rosa_laevigata | RLG00000037090 |
| rosa_multiflora | Rmu_sc0005537.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00000450 |
| rosa_rugosa | Rorug05G0489600 Rorug05G0489700 |
| rosa_samantha | Rh5AG542400 Rh5BG568400 Rh5CG590000 Rh5DG576400 |
| rosa_wichuraiana | Rw5G050450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1369, 3584 |
| Acc16I | TGCGCA | 1 cut(s) | 3231 |
| Acc36I | ACCTGC | 3 cut(s) | 1369, 1522, 3584 |
| AccB1I | GGYRCC | 1 cut(s) | 4073 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2689, 2843 |
| AccBSI | CCGCTC | 1 cut(s) | 2196 |
| AccI | GTMKAC | 2 cut(s) | 274, 1643 |
| AccII | CGCG | 1 cut(s) | 721 |
| AciI | CCGC | 9 cut(s) | 334, 569, 719, 775, 1232, 1375, 2194, 4186, 4354 |
| AclI | AACGTT | 3 cut(s) | 925, 3004, 4216 |
| AcoI | YGGCCR | 1 cut(s) | 2562 |
| AcsI | RAATTY | 5 cut(s) | 86, 288, 889, 915, 4610 |
| AcuI | CTGAAG | 7 cut(s) | 281, 2334, 2874, 3609, 3848, 4004, 4089 |
| AfaI | GTAC | 9 cut(s) | 177, 835, 2430, 2805, 2938, 3185, 3726, 3869, 4700 |
| AflII | CTTAAG | 1 cut(s) | 2321 |
| AflIII | ACRYGT | 2 cut(s) | 3361, 3760 |
| AhlI | ACTAGT | 1 cut(s) | 4009 |
| AjnI | CCWGG | 5 cut(s) | 390, 582, 1456, 2421, 2864 |
| AleI | CACNNNNGTG | 1 cut(s) | 2315 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1503, 1535 |
| Alw21I | GWGCWC | 4 cut(s) | 193, 3575, 3601, 4381 |
| Alw26I | GTCTC | 6 cut(s) | 157, 821, 1849, 1854, 3760, 4140 |
| Alw44I | GTGCAC | 1 cut(s) | 3597 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 425, 3708 |
| AoxI | GGCC | 8 cut(s) | 388, 728, 845, 1064, 2562, 2827, 2991, 3165 |
| ApaLI | GTGCAC | 1 cut(s) | 3597 |
| ApoI | RAATTY | 5 cut(s) | 86, 288, 889, 915, 4610 |
| AseI | ATTAAT | 4 cut(s) | 677, 1689, 4497, 4631 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 90, 1738 |
| AspLEI | GCGC | 2 cut(s) | 3232, 3240 |
| AspS9I | GGNCC | 9 cut(s) | 367, 397, 729, 2827, 3165, 3474, 3916, 4246, 4357 |
| AsuC2I | CCSGG | 3 cut(s) | 365, 3498, 3957 |
| AsuHPI | GGTGA | 8 cut(s) | 485, 875, 980, 2470, 2545, 3673, 3822, 3881 |
| AsuII | TTCGAA | 1 cut(s) | 1166 |
| AvaII | GGWCC | 6 cut(s) | 367, 397, 3474, 3916, 4246, 4357 |
| BaeGI | GKGCMC | 2 cut(s) | 3601, 4640 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3328, 3361 |
| BalI | TGGCCA | 1 cut(s) | 2564 |
| BamHI | GGATCC | 3 cut(s) | 1172, 2065, 2395 |
| BanI | GGYRCC | 1 cut(s) | 4073 |
| BanII | GRGCYC | 3 cut(s) | 948, 2343, 3722 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2796, 2828 |
| BbsI | GAAGAC | 4 cut(s) | 594, 819, 1532, 2196 |
| Bbv12I | GWGCWC | 4 cut(s) | 193, 3575, 3601, 4381 |
| BbvCI | CCTCAGC | 2 cut(s) | 448, 1971 |
| BceAI | ACGGC | 1 cut(s) | 314 |
| BciT130I | CCWGG | 5 cut(s) | 392, 584, 1458, 2423, 2866 |
| BciVI | GTATCC | 1 cut(s) | 797 |
| BclI | TGATCA | 5 cut(s) | 157, 2119, 2409, 2758, 3366 |
| BcnI | CCSGG | 3 cut(s) | 365, 3498, 3957 |
| BcoDI | GTCTC | 6 cut(s) | 157, 821, 1849, 1854, 3760, 4140 |
| BcuI | ACTAGT | 1 cut(s) | 4009 |
| BfmI | CTRYAG | 7 cut(s) | 426, 489, 1272, 2088, 2352, 4311, 4560 |
| BfrI | CTTAAG | 1 cut(s) | 2321 |
| BfuAI | ACCTGC | 3 cut(s) | 1369, 1522, 3584 |
| BfuI | GTATCC | 1 cut(s) | 797 |
| BglII | AGATCT | 2 cut(s) | 2403, 3774 |
| BmcAI | AGTACT | 2 cut(s) | 835, 3869 |
| Bme1390I | CCNGG | 8 cut(s) | 365, 392, 584, 1458, 2423, 2866, 3498, 3957 |
| Bme18I | GGWCC | 6 cut(s) | 367, 397, 3474, 3916, 4246, 4357 |
| BmgT120I | GGNCC | 9 cut(s) | 367, 397, 729, 2827, 3165, 3474, 3916, 4246, 4357 |
| BmrFI | CCNGG | 8 cut(s) | 365, 392, 584, 1458, 2423, 2866, 3498, 3957 |
| BmrI | ACTGGG | 1 cut(s) | 2699 |
| BmuI | ACTGGG | 1 cut(s) | 2699 |
| BpiI | GAAGAC | 4 cut(s) | 594, 819, 1532, 2196 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2767, 2799 |
| BpmI | CTGGAG | 6 cut(s) | 156, 413, 1467, 2848, 2912, 4694 |
| Bpu10I | CCTNAGC | 3 cut(s) | 448, 1971, 3716 |
| Bpu14I | TTCGAA | 1 cut(s) | 1166 |
| BpuEI | CTTGAG | 4 cut(s) | 177, 2067, 2263, 3763 |
| BpuMI | CCSGG | 3 cut(s) | 365, 3498, 3957 |
| Bsa29I | ATCGAT | 1 cut(s) | 4257 |
| BsaAI | YACGTR | 3 cut(s) | 163, 179, 2009 |
| BsaBI | GATNNNNATC | 4 cut(s) | 2124, 2408, 2757, 3114 |
| BsaJI | CCNNGG | 3 cut(s) | 582, 2683, 3579 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 135, 165, 2814, 2844, 3900, 3930, 4667, 4697 |
| Bse1I | ACTGG | 7 cut(s) | 60, 173, 2155, 2694, 3552, 4346, 4645 |
| Bse3DI | GCAATG | 4 cut(s) | 3612, 3614, 3893, 4374 |
| Bse8I | GATNNNNATC | 4 cut(s) | 2124, 2408, 2757, 3114 |
| BseBI | CCWGG | 5 cut(s) | 392, 584, 1458, 2423, 2866 |
| BseCI | ATCGAT | 1 cut(s) | 4257 |
| BseDI | CCNNGG | 3 cut(s) | 582, 2683, 3579 |
| BseJI | GATNNNNATC | 4 cut(s) | 2124, 2408, 2757, 3114 |
| BseMI | GCAATG | 4 cut(s) | 3612, 3614, 3893, 4374 |
| BseMII | CTCAG | 6 cut(s) | 462, 813, 1962, 2948, 3707, 4732 |
| BseNI | ACTGG | 7 cut(s) | 60, 173, 2155, 2694, 3552, 4346, 4645 |
| BseRI | GAGGAG | 2 cut(s) | 3634, 4691 |
| BseSI | GKGCMC | 2 cut(s) | 3601, 4640 |
| BseYI | CCCAGC | 2 cut(s) | 3417, 4291 |
| BsgI | GTGCAG | 3 cut(s) | 1446, 2676, 2892 |
| Bsh1236I | CGCG | 1 cut(s) | 721 |
| BshFI | GGCC | 8 cut(s) | 390, 730, 847, 1066, 2564, 2829, 2993, 3167 |
| BshNI | GGYRCC | 1 cut(s) | 4073 |
| BshVI | ATCGAT | 1 cut(s) | 4257 |
| BsiHKAI | GWGCWC | 4 cut(s) | 193, 3575, 3601, 4381 |
| BsiSI | CCGG | 3 cut(s) | 364, 3498, 3956 |
| BslFI | GGGAC | 5 cut(s) | 2155, 2714, 3460, 3902, 4370 |
| BsmAI | GTCTC | 6 cut(s) | 157, 821, 1849, 1854, 3760, 4140 |
| BsmBI | CGTCTC | 1 cut(s) | 1854 |
| BsmFI | GGGAC | 5 cut(s) | 2155, 2714, 3460, 3902, 4370 |
| BsmI | GAATGC | 3 cut(s) | 64, 484, 3379 |
| BsnI | GGCC | 8 cut(s) | 390, 730, 847, 1066, 2564, 2829, 2993, 3167 |
| Bsp119I | TTCGAA | 1 cut(s) | 1166 |
| Bsp1286I | GDGCHC | 8 cut(s) | 193, 948, 2343, 3575, 3601, 3722, 4381, 4640 |
| Bsp1407I | TGTACA | 1 cut(s) | 3724 |
| BspACI | CCGC | 9 cut(s) | 334, 569, 719, 775, 1232, 1375, 2194, 4186, 4354 |
| BspANI | GGCC | 8 cut(s) | 390, 730, 847, 1066, 2564, 2829, 2993, 3167 |
| BspCNI | CTCAG | 6 cut(s) | 461, 814, 1963, 2949, 3708, 4731 |
| BspDI | ATCGAT | 1 cut(s) | 4257 |
| BspFNI | CGCG | 1 cut(s) | 721 |
| BspHI | TCATGA | 2 cut(s) | 238, 349 |
| BspMAI | CTGCAG | 6 cut(s) | 430, 1276, 2092, 2356, 4315, 4564 |
| BspMI | ACCTGC | 3 cut(s) | 1369, 1522, 3584 |
| BspQI | GCTCTTC | 1 cut(s) | 4023 |
| BspT104I | TTCGAA | 1 cut(s) | 1166 |
| BspT107I | GGYRCC | 1 cut(s) | 4073 |
| BspTI | CTTAAG | 1 cut(s) | 2321 |
| BsrBI | CCGCTC | 1 cut(s) | 2196 |
| BsrDI | GCAATG | 4 cut(s) | 3612, 3614, 3893, 4374 |
| BsrGI | TGTACA | 1 cut(s) | 3724 |
| BsrI | ACTGG | 7 cut(s) | 60, 173, 2155, 2694, 3552, 4346, 4645 |
| BssECI | CCNNGG | 3 cut(s) | 582, 2683, 3579 |
| BssT1I | CCWWGG | 2 cut(s) | 2683, 3579 |
| Bst2UI | CCWGG | 5 cut(s) | 392, 584, 1458, 2423, 2866 |
| Bst4CI | ACNGT | 7 cut(s) | 137, 1029, 1843, 3747, 3973, 4698, 4745 |
| Bst6I | CTCTTC | 7 cut(s) | 2739, 2814, 3252, 4023, 4029, 4163, 4437 |
| BstAFI | CTTAAG | 1 cut(s) | 2321 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 343, 425, 2879 |
| BstAUI | TGTACA | 1 cut(s) | 3724 |
| BstBAI | YACGTR | 3 cut(s) | 163, 179, 2009 |
| BstBI | TTCGAA | 1 cut(s) | 1166 |
| BstC8I | GCNNGC | 7 cut(s) | 388, 714, 1017, 1504, 2659, 3934, 4460 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 736 |
| BstFNI | CGCG | 1 cut(s) | 721 |
| BstHHI | GCGC | 2 cut(s) | 3232, 3240 |
| BstMAI | GTCTC | 6 cut(s) | 157, 821, 1849, 1854, 3760, 4140 |
| BstNI | CCWGG | 5 cut(s) | 392, 584, 1458, 2423, 2866 |
| BstNSI | RCATGY | 9 cut(s) | 223, 381, 1506, 1838, 2061, 2585, 3365, 3764, 3936 |
| BstSCI | CCNGG | 8 cut(s) | 363, 390, 582, 1456, 2421, 2864, 3496, 3955 |
| BstSFI | CTRYAG | 7 cut(s) | 426, 489, 1272, 2088, 2352, 4311, 4560 |
| BstSLI | GKGCMC | 2 cut(s) | 3601, 4640 |
| BstUI | CGCG | 1 cut(s) | 721 |
| BstV2I | GAAGAC | 4 cut(s) | 594, 819, 1532, 2196 |
| BstX2I | RGATCY | 7 cut(s) | 1172, 2065, 2125, 2395, 2403, 3562, 3774 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 2298, 2572, 3221, 4084, 4286 |
| BstYI | RGATCY | 7 cut(s) | 1172, 2065, 2125, 2395, 2403, 3562, 3774 |
| Bsu15I | ATCGAT | 1 cut(s) | 4257 |
| BsuI | GTATCC | 1 cut(s) | 797 |
| BsuRI | GGCC | 8 cut(s) | 390, 730, 847, 1066, 2564, 2829, 2993, 3167 |
| BsuTUI | ATCGAT | 1 cut(s) | 4257 |
| BtgZI | GCGATG | 1 cut(s) | 4400 |
| BtsI | GCAGTG | 1 cut(s) | 275 |
| BtsIMutI | CAGTG | 9 cut(s) | 245, 275, 962, 1337, 2310, 2954, 3405, 3545, 4638 |
| BveI | ACCTGC | 3 cut(s) | 1369, 1522, 3584 |
| Cac8I | GCNNGC | 7 cut(s) | 388, 714, 1017, 1504, 2659, 3934, 4460 |
| CaiI | CAGNNNCTG | 2 cut(s) | 425, 3708 |
| CciI | TCATGA | 2 cut(s) | 238, 349 |
| CfoI | GCGC | 2 cut(s) | 3232, 3240 |
| Cfr13I | GGNCC | 9 cut(s) | 367, 397, 729, 2827, 3165, 3474, 3916, 4246, 4357 |
| ClaI | ATCGAT | 1 cut(s) | 4257 |
| Csp6I | GTAC | 9 cut(s) | 176, 834, 2429, 2804, 2937, 3184, 3725, 3868, 4699 |
| CviQI | GTAC | 9 cut(s) | 176, 834, 2429, 2804, 2937, 3184, 3725, 3868, 4699 |
| DraI | TTTAAA | 4 cut(s) | 468, 1096, 1812, 3000 |
| EaeI | YGGCCR | 1 cut(s) | 2562 |
| Eam1104I | CTCTTC | 7 cut(s) | 2739, 2814, 3252, 4023, 4029, 4163, 4437 |
| EarI | CTCTTC | 7 cut(s) | 2739, 2814, 3252, 4023, 4029, 4163, 4437 |
| EciI | GGCGGA | 1 cut(s) | 584 |
| Eco130I | CCWWGG | 2 cut(s) | 2683, 3579 |
| Eco24I | GRGCYC | 3 cut(s) | 948, 2343, 3722 |
| Eco47I | GGWCC | 6 cut(s) | 367, 397, 3474, 3916, 4246, 4357 |
| Eco57I | CTGAAG | 7 cut(s) | 281, 2334, 2874, 3609, 3848, 4004, 4089 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 736 |
| EcoO109I | RGGNCCY | 4 cut(s) | 367, 397, 2827, 3916 |
| EcoRII | CCWGG | 5 cut(s) | 390, 582, 1456, 2421, 2864 |
| EcoT14I | CCWWGG | 2 cut(s) | 2683, 3579 |
| EcoT22I | ATGCAT | 3 cut(s) | 225, 2552, 2583 |
| EcoT38I | GRGCYC | 3 cut(s) | 948, 2343, 3722 |
| ErhI | CCWWGG | 2 cut(s) | 2683, 3579 |
| Esp3I | CGTCTC | 1 cut(s) | 1854 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4647, 4679 |
| FaqI | GGGAC | 5 cut(s) | 2155, 2714, 3460, 3902, 4370 |
| FauI | CCCGC | 1 cut(s) | 4347 |
| FauNDI | CATATG | 3 cut(s) | 2710, 3289, 4164 |
| FbaI | TGATCA | 5 cut(s) | 157, 2119, 2409, 2758, 3366 |
| FblI | GTMKAC | 2 cut(s) | 274, 1643 |
| FriOI | GRGCYC | 3 cut(s) | 948, 2343, 3722 |
| FspI | TGCGCA | 1 cut(s) | 3231 |
| GlaI | GCGC | 2 cut(s) | 3231, 3239 |
| GsaI | CCCAGC | 2 cut(s) | 3421, 4295 |
| GsuI | CTGGAG | 6 cut(s) | 156, 413, 1467, 2848, 2912, 4694 |
| HaeIII | GGCC | 8 cut(s) | 390, 730, 847, 1066, 2564, 2829, 2993, 3167 |
| HapII | CCGG | 3 cut(s) | 364, 3498, 3956 |
| HhaI | GCGC | 2 cut(s) | 3232, 3240 |
| Hin6I | GCGC | 2 cut(s) | 3230, 3238 |
| HinP1I | GCGC | 2 cut(s) | 3230, 3238 |
| HincII | GTYRAC | 1 cut(s) | 1762 |
| HindII | GTYRAC | 1 cut(s) | 1762 |
| HindIII | AAGCTT | 8 cut(s) | 2285, 2930, 3011, 3326, 3837, 4233, 4472, 4736 |
| HpaII | CCGG | 3 cut(s) | 364, 3498, 3956 |
| HphI | GGTGA | 8 cut(s) | 485, 875, 980, 2470, 2545, 3673, 3822, 3881 |
| Hpy166II | GTNNAC | 6 cut(s) | 275, 1644, 1678, 1762, 3599, 4701 |
| Hpy8I | GTNNAC | 6 cut(s) | 275, 1644, 1678, 1762, 3599, 4701 |
| Hpy99I | CGWCG | 1 cut(s) | 3653 |
| HpyCH4III | ACNGT | 7 cut(s) | 137, 1029, 1843, 3747, 3973, 4698, 4745 |
| HspAI | GCGC | 2 cut(s) | 3230, 3238 |
| Ksp22I | TGATCA | 5 cut(s) | 157, 2119, 2409, 2758, 3366 |
| LguI | GCTCTTC | 1 cut(s) | 4023 |
| LmnI | GCTCC | 8 cut(s) | 175, 951, 2446, 2591, 2698, 2719, 2893, 4333 |
| MbiI | CCGCTC | 1 cut(s) | 2196 |
| MfeI | CAATTG | 3 cut(s) | 3407, 3728, 3927 |
| MflI | RGATCY | 7 cut(s) | 1172, 2065, 2125, 2395, 2403, 3562, 3774 |
| MhlI | GDGCHC | 8 cut(s) | 193, 948, 2343, 3575, 3601, 3722, 4381, 4640 |
| MlsI | TGGCCA | 1 cut(s) | 2564 |
| MluNI | TGGCCA | 1 cut(s) | 2564 |
| MlyI | GAGTC | 8 cut(s) | 823, 833, 1096, 1145, 1781, 2776, 3809, 4107 |
| MmeI | TCCRAC | 5 cut(s) | 762, 1137, 1470, 2824, 3136 |
| Mox20I | TGGCCA | 1 cut(s) | 2564 |
| Mph1103I | ATGCAT | 3 cut(s) | 225, 2552, 2583 |
| MroXI | GAANNNNTTC | 2 cut(s) | 90, 1738 |
| MscI | TGGCCA | 1 cut(s) | 2564 |
| Msp20I | TGGCCA | 1 cut(s) | 2564 |
| MspA1I | CMGCKG | 3 cut(s) | 452, 1375, 1970 |
| MspCI | CTTAAG | 1 cut(s) | 2321 |
| MspI | CCGG | 3 cut(s) | 364, 3498, 3956 |
| MspR9I | CCNGG | 8 cut(s) | 365, 392, 584, 1458, 2423, 2866, 3498, 3957 |
| MunI | CAATTG | 3 cut(s) | 3407, 3728, 3927 |
| Mva1269I | GAATGC | 3 cut(s) | 64, 484, 3379 |
| MvaI | CCWGG | 5 cut(s) | 392, 584, 1458, 2423, 2866 |
| MvnI | CGCG | 1 cut(s) | 721 |
| NciI | CCSGG | 3 cut(s) | 365, 3498, 3957 |
| NdeI | CATATG | 3 cut(s) | 2710, 3289, 4164 |
| NmeAIII | GCCGAG | 1 cut(s) | 1576 |
| NmuCI | GTSAC | 8 cut(s) | 126, 968, 2779, 2950, 3679, 3710, 3756, 3887 |
| NsbI | TGCGCA | 1 cut(s) | 3231 |
| NsiI | ATGCAT | 3 cut(s) | 225, 2552, 2583 |
| NspI | RCATGY | 9 cut(s) | 223, 381, 1506, 1838, 2061, 2585, 3365, 3764, 3936 |
| NspV | TTCGAA | 1 cut(s) | 1166 |
| OliI | CACNNNNGTG | 1 cut(s) | 2315 |
| PacI | TTAATTAA | 1 cut(s) | 2037 |
| PaeI | GCATGC | 2 cut(s) | 1506, 3936 |
| PagI | TCATGA | 2 cut(s) | 238, 349 |
| PaqCI | CACCTGC | 2 cut(s) | 1369, 3584 |
| PciI | ACATGT | 2 cut(s) | 3361, 3760 |
| PciSI | GCTCTTC | 1 cut(s) | 4023 |
| PctI | GAATGC | 3 cut(s) | 64, 484, 3379 |
| PdmI | GAANNNNTTC | 2 cut(s) | 90, 1738 |
| PflFI | GACNNNGTC | 1 cut(s) | 365 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2689, 2843 |
| PfoI | TCCNGGA | 1 cut(s) | 2864 |
| PleI | GAGTC | 8 cut(s) | 822, 832, 1095, 1144, 1780, 2776, 3808, 4106 |
| PpsI | GAGTC | 8 cut(s) | 822, 832, 1095, 1144, 1780, 2776, 3808, 4106 |
| Ppu21I | YACGTR | 3 cut(s) | 163, 179, 2009 |
| PpuMI | RGGWCCY | 3 cut(s) | 367, 397, 3916 |
| PscI | ACATGT | 2 cut(s) | 3361, 3760 |
| PshBI | ATTAAT | 4 cut(s) | 677, 1689, 4497, 4631 |
| Psp1406I | AACGTT | 3 cut(s) | 925, 3004, 4216 |
| Psp5II | RGGWCCY | 3 cut(s) | 367, 397, 3916 |
| Psp6I | CCWGG | 5 cut(s) | 390, 582, 1456, 2421, 2864 |
| PspFI | CCCAGC | 2 cut(s) | 3417, 4291 |
| PspGI | CCWGG | 5 cut(s) | 390, 582, 1456, 2421, 2864 |
| PspPI | GGNCC | 9 cut(s) | 367, 397, 729, 2827, 3165, 3474, 3916, 4246, 4357 |
| PspPPI | RGGWCCY | 3 cut(s) | 367, 397, 3916 |
| PstI | CTGCAG | 6 cut(s) | 430, 1276, 2092, 2356, 4315, 4564 |
| PstNI | CAGNNNCTG | 2 cut(s) | 425, 3708 |
| PsuI | RGATCY | 7 cut(s) | 1172, 2065, 2125, 2395, 2403, 3562, 3774 |
| PsyI | GACNNNGTC | 1 cut(s) | 365 |
| PvuII | CAGCTG | 2 cut(s) | 452, 1970 |
| RsaI | GTAC | 9 cut(s) | 177, 835, 2430, 2805, 2938, 3185, 3726, 3869, 4700 |
| RsaNI | GTAC | 9 cut(s) | 176, 834, 2429, 2804, 2937, 3184, 3725, 3868, 4699 |
| SapI | GCTCTTC | 1 cut(s) | 4023 |
| Sau96I | GGNCC | 9 cut(s) | 367, 397, 729, 2827, 3165, 3474, 3916, 4246, 4357 |
| ScaI | AGTACT | 2 cut(s) | 835, 3869 |
| SchI | GAGTC | 8 cut(s) | 823, 833, 1096, 1145, 1781, 2776, 3809, 4107 |
| ScrFI | CCNGG | 8 cut(s) | 365, 392, 584, 1458, 2423, 2866, 3498, 3957 |
| SduI | GDGCHC | 8 cut(s) | 193, 948, 2343, 3575, 3601, 3722, 4381, 4640 |
| SfcI | CTRYAG | 7 cut(s) | 426, 489, 1272, 2088, 2352, 4311, 4560 |
| SfuI | TTCGAA | 1 cut(s) | 1166 |
| SinI | GGWCC | 6 cut(s) | 367, 397, 3474, 3916, 4246, 4357 |
| SmlI | CTYRAG | 5 cut(s) | 192, 2082, 2242, 2321, 3778 |
| SmoI | CTYRAG | 5 cut(s) | 192, 2082, 2242, 2321, 3778 |
| SpeI | ACTAGT | 1 cut(s) | 4009 |
| SphI | GCATGC | 2 cut(s) | 1506, 3936 |
| SsiI | CCGC | 9 cut(s) | 334, 569, 719, 775, 1232, 1375, 2194, 4186, 4354 |
| StyD4I | CCNGG | 8 cut(s) | 363, 390, 582, 1456, 2421, 2864, 3496, 3955 |
| StyI | CCWWGG | 2 cut(s) | 2683, 3579 |
| TaaI | ACNGT | 7 cut(s) | 137, 1029, 1843, 3747, 3973, 4698, 4745 |
| TaqI | TCGA | 9 cut(s) | 415, 830, 1166, 1700, 3250, 3383, 3651, 4257, 4440 |
| TatI | WGTACW | 6 cut(s) | 833, 2936, 3183, 3724, 3867, 4698 |
| TauI | GCSGC | 3 cut(s) | 337, 1378, 4189 |
| TscAI | CASTG | 9 cut(s) | 252, 275, 962, 1344, 2317, 2961, 3405, 3552, 4645 |
| TseFI | GTSAC | 8 cut(s) | 126, 968, 2779, 2950, 3679, 3710, 3756, 3887 |
| Tsp45I | GTSAC | 8 cut(s) | 126, 968, 2779, 2950, 3679, 3710, 3756, 3887 |
| TspGWI | ACGGA | 1 cut(s) | 3637 |
| TspRI | CASTG | 9 cut(s) | 252, 275, 962, 1344, 2317, 2961, 3405, 3552, 4645 |
| Tth111I | GACNNNGTC | 1 cut(s) | 365 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2689, 2843 |
| Vha464I | CTTAAG | 1 cut(s) | 2321 |
| VneI | GTGCAC | 1 cut(s) | 3597 |
| VpaK11BI | GGWCC | 6 cut(s) | 367, 397, 3474, 3916, 4246, 4357 |
| VspI | ATTAAT | 4 cut(s) | 677, 1689, 4497, 4631 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 736 |
| XapI | RAATTY | 5 cut(s) | 86, 288, 889, 915, 4610 |
| XbaI | TCTAGA | 3 cut(s) | 1298, 2380, 2543 |
| XceI | RCATGY | 9 cut(s) | 223, 381, 1506, 1838, 2061, 2585, 3365, 3764, 3936 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1657, 3533 |
| XmiI | GTMKAC | 2 cut(s) | 274, 1643 |
| XmnI | GAANNNNTTC | 2 cut(s) | 90, 1738 |
| ZrmI | AGTACT | 2 cut(s) | 835, 3869 |
| Zsp2I | ATGCAT | 3 cut(s) | 225, 2552, 2583 |