TATA-binding protein-associated factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54280 AT3G54280 |
| fragaria_vesca | FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 |
| malus_domestica | MD03G1000900.v1.1 MD11G1000100.v1.1 |
| prunus_persica | Prupe.6G000100_v2.0.a1 |
| pyrus_communis | pycom03g00100 pycom11g00010 |
| rosa_chinensis | RchiOBHm_Chr5g0084181 |
| rosa_laevigata | RLG00000037090 |
| rosa_multiflora | Rmu_sc0005537.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00000450 |
| rosa_rugosa | Rorug05G0489600 Rorug05G0489700 |
| rosa_samantha | Rh5AG542400 Rh5BG568400 Rh5CG590000 Rh5DG576400 |
| rosa_wichuraiana | Rw5G050450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3230 |
| Acc16I | TGCGCA | 1 cut(s) | 4023 |
| Acc36I | ACCTGC | 3 cut(s) | 694, 2230, 4480 |
| AccB1I | GGYRCC | 1 cut(s) | 1573 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 210, 3707 |
| AccI | GTMKAC | 3 cut(s) | 1123, 2504, 4914 |
| AccIII | TCCGGA | 2 cut(s) | 4543, 5461 |
| AclI | AACGTT | 2 cut(s) | 3868, 5077 |
| AcoI | YGGCCR | 2 cut(s) | 1176, 3426 |
| AcsI | RAATTY | 9 cut(s) | 302, 311, 447, 577, 935, 1137, 1747, 1773, 2514 |
| AcuI | CTGAAG | 5 cut(s) | 2709, 4473, 4709, 4950, 5586 |
| AcyI | GRCGYC | 1 cut(s) | 4821 |
| AflII | CTTAAG | 1 cut(s) | 3185 |
| AflIII | ACRYGT | 4 cut(s) | 393, 4225, 4621, 4708 |
| AjnI | CCWGG | 8 cut(s) | 1413, 1482, 1716, 2317, 2712, 3285, 3681, 4816 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2588, 2620 |
| AleI | CACNNNNGTG | 1 cut(s) | 1582 |
| Alw21I | GWGCWC | 4 cut(s) | 247, 1042, 4465, 5199 |
| Alw26I | GTCTC | 8 cut(s) | 670, 1006, 1639, 2930, 4375, 4802, 4828, 5001 |
| Alw44I | GTGCAC | 1 cut(s) | 1038 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1274, 3553, 4569 |
| Ama87I | CYCGRG | 2 cut(s) | 4361, 4695 |
| Aor13HI | TCCGGA | 2 cut(s) | 4543, 5461 |
| ApaLI | GTGCAC | 1 cut(s) | 1038 |
| ApoI | RAATTY | 9 cut(s) | 302, 311, 447, 577, 935, 1137, 1747, 1773, 2514 |
| AseI | ATTAAT | 3 cut(s) | 66, 2550, 5358 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 939, 1194, 1537, 2814 |
| AspLEI | GCGC | 3 cut(s) | 511, 4024, 5501 |
| AspS9I | GGNCC | 5 cut(s) | 1246, 2031, 4029, 4338, 4579 |
| AsuC2I | CCSGG | 2 cut(s) | 4362, 4363 |
| AsuHPI | GGTGA | 6 cut(s) | 625, 1354, 4660, 4683, 4781, 5029 |
| AsuII | TTCGAA | 1 cut(s) | 2420 |
| AvaI | CYCGRG | 2 cut(s) | 4361, 4695 |
| AvaII | GGWCC | 3 cut(s) | 1246, 2031, 4338 |
| AxyI | CCTNAGG | 1 cut(s) | 3821 |
| BaeGI | GKGCMC | 2 cut(s) | 1042, 5242 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 5433, 5466 |
| BalI | TGGCCA | 2 cut(s) | 1178, 3428 |
| BamHI | GGATCC | 3 cut(s) | 2926, 3259, 4426 |
| BanI | GGYRCC | 1 cut(s) | 1573 |
| BanII | GRGCYC | 1 cut(s) | 272 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 715, 747, 2163, 2195, 3660, 3692 |
| BauI | CACGAG | 1 cut(s) | 3687 |
| BbsI | GAAGAC | 4 cut(s) | 36, 1851, 3060, 4103 |
| Bbv12I | GWGCWC | 4 cut(s) | 247, 1042, 4465, 5199 |
| BbvCI | CCTCAGC | 2 cut(s) | 2832, 3264 |
| BciT130I | CCWGG | 8 cut(s) | 1415, 1484, 1718, 2319, 2714, 3287, 3683, 4818 |
| BciVI | GTATCC | 4 cut(s) | 801, 1655, 5461, 5469 |
| BclI | TGATCA | 5 cut(s) | 316, 1006, 2443, 2980, 3622 |
| BcnI | CCSGG | 2 cut(s) | 4362, 4363 |
| BcoDI | GTCTC | 8 cut(s) | 670, 1006, 1639, 2930, 4375, 4802, 4828, 5001 |
| BfmI | CTRYAG | 7 cut(s) | 1275, 2949, 3216, 3300, 4665, 4938, 5340 |
| BfoI | RGCGCY | 1 cut(s) | 5502 |
| BfrI | CTTAAG | 1 cut(s) | 3185 |
| BfuAI | ACCTGC | 3 cut(s) | 694, 2230, 4480 |
| BfuI | GTATCC | 4 cut(s) | 801, 1655, 5461, 5469 |
| BlpI | GCTNAGC | 1 cut(s) | 4438 |
| BmcAI | AGTACT | 2 cut(s) | 1693, 4730 |
| Bme18I | GGWCC | 3 cut(s) | 1246, 2031, 4338 |
| BmeT110I | CYCGRG | 2 cut(s) | 4361, 4695 |
| BmgT120I | GGNCC | 5 cut(s) | 1246, 2031, 4029, 4338, 4579 |
| BmrI | ACTGGG | 3 cut(s) | 1514, 3563, 4036 |
| BmuI | ACTGGG | 3 cut(s) | 1514, 3563, 4036 |
| BpiI | GAAGAC | 4 cut(s) | 36, 1851, 3060, 4103 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 824, 856, 2837, 2869, 3247, 3279 |
| BpmI | CTGGAG | 5 cut(s) | 1505, 2073, 2328, 3712, 4090 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2832, 3264 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4438 |
| Bpu14I | TTCGAA | 1 cut(s) | 2420 |
| BpuEI | CTTGAG | 2 cut(s) | 514, 2551 |
| BpuMI | CCSGG | 2 cut(s) | 4362, 4363 |
| BsaAI | YACGTR | 2 cut(s) | 89, 1028 |
| BsaHI | GRCGYC | 1 cut(s) | 4821 |
| BsaI | GGTCTC | 1 cut(s) | 670 |
| BsaWI | WCCGGW | 2 cut(s) | 4543, 5461 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 984, 1014 |
| Bse21I | CCTNAGG | 1 cut(s) | 3821 |
| Bse3DI | GCAATG | 4 cut(s) | 1328, 4754, 4811, 5235 |
| BseAI | TCCGGA | 2 cut(s) | 4543, 5461 |
| BseBI | CCWGG | 8 cut(s) | 1415, 1484, 1718, 2319, 2714, 3287, 3683, 4818 |
| BseMI | GCAATG | 4 cut(s) | 1328, 4754, 4811, 5235 |
| BseRI | GAGGAG | 1 cut(s) | 3838 |
| BseSI | GKGCMC | 2 cut(s) | 1042, 5242 |
| BseYI | CCCAGC | 1 cut(s) | 5152 |
| BsgI | GTGCAG | 5 cut(s) | 2112, 2678, 2736, 3540, 3756 |
| BshNI | GGYRCC | 1 cut(s) | 1573 |
| BsiHKAI | GWGCWC | 4 cut(s) | 247, 1042, 4465, 5199 |
| BsiHKCI | CYCGRG | 2 cut(s) | 4361, 4695 |
| BsiSI | CCGG | 5 cut(s) | 474, 1183, 4362, 4544, 5462 |
| BsiWI | CGTACG | 1 cut(s) | 1024 |
| BslFI | GGGAC | 4 cut(s) | 3016, 3190, 3564, 4324 |
| BsmAI | GTCTC | 8 cut(s) | 670, 1006, 1639, 2930, 4375, 4802, 4828, 5001 |
| BsmBI | CGTCTC | 1 cut(s) | 4828 |
| BsmFI | GGGAC | 4 cut(s) | 3016, 3190, 3564, 4324 |
| BsmI | GAATGC | 5 cut(s) | 913, 1333, 3376, 4243, 5374 |
| Bso31I | GGTCTC | 1 cut(s) | 670 |
| BsoBI | CYCGRG | 2 cut(s) | 4361, 4695 |
| Bsp119I | TTCGAA | 1 cut(s) | 2420 |
| Bsp1286I | GDGCHC | 6 cut(s) | 247, 272, 1042, 4465, 5199, 5242 |
| Bsp13I | TCCGGA | 2 cut(s) | 4543, 5461 |
| Bsp1407I | TGTACA | 1 cut(s) | 4585 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4438 |
| Bsp19I | CCATGG | 3 cut(s) | 52, 421, 3423 |
| BspEI | TCCGGA | 2 cut(s) | 4543, 5461 |
| BspHI | TCATGA | 1 cut(s) | 1087 |
| BspMAI | CTGCAG | 4 cut(s) | 1279, 2953, 3220, 4669 |
| BspMI | ACCTGC | 3 cut(s) | 694, 2230, 4480 |
| BspQI | GCTCTTC | 1 cut(s) | 5532 |
| BspT104I | TTCGAA | 1 cut(s) | 2420 |
| BspT107I | GGYRCC | 1 cut(s) | 1573 |
| BspTI | CTTAAG | 1 cut(s) | 3185 |
| BspTNI | GGTCTC | 1 cut(s) | 670 |
| BsrDI | GCAATG | 4 cut(s) | 1328, 4754, 4811, 5235 |
| BsrGI | TGTACA | 1 cut(s) | 4585 |
| BssNI | GRCGYC | 1 cut(s) | 4821 |
| BssSI | CACGAG | 1 cut(s) | 3687 |
| BssT1I | CCWWGG | 6 cut(s) | 52, 149, 204, 421, 3423, 4443 |
| Bst2BI | CACGAG | 1 cut(s) | 3687 |
| Bst2UI | CCWGG | 8 cut(s) | 1415, 1484, 1718, 2319, 2714, 3287, 3683, 4818 |
| Bst4CI | ACNGT | 8 cut(s) | 986, 1581, 2184, 2470, 3059, 3620, 3653, 4386 |
| Bst6I | CTCTTC | 8 cut(s) | 548, 1431, 1938, 3603, 4890, 5024, 5298, 5532 |
| BstACI | GRCGYC | 1 cut(s) | 4821 |
| BstAFI | CTTAAG | 1 cut(s) | 3185 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1192, 1274, 3743, 4495, 5369 |
| BstAUI | TGTACA | 1 cut(s) | 4585 |
| BstBAI | YACGTR | 2 cut(s) | 89, 1028 |
| BstBI | TTCGAA | 1 cut(s) | 2420 |
| BstDSI | CCRYGG | 4 cut(s) | 52, 421, 1577, 3423 |
| BstH2I | RGCGCY | 1 cut(s) | 5502 |
| BstHHI | GCGC | 3 cut(s) | 511, 4024, 5501 |
| BstMAI | GTCTC | 8 cut(s) | 670, 1006, 1639, 2930, 4375, 4802, 4828, 5001 |
| BstNI | CCWGG | 8 cut(s) | 1415, 1484, 1718, 2319, 2714, 3287, 3683, 4818 |
| BstNSI | RCATGY | 7 cut(s) | 397, 1072, 2922, 3529, 4229, 4625, 4712 |
| BstSFI | CTRYAG | 7 cut(s) | 1275, 2949, 3216, 3300, 4665, 4938, 5340 |
| BstSLI | GKGCMC | 2 cut(s) | 1042, 5242 |
| BstV2I | GAAGAC | 4 cut(s) | 36, 1851, 3060, 4103 |
| BstX2I | RGATCY | 5 cut(s) | 853, 2926, 3259, 4426, 5107 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 59, 1584, 4085 |
| BstYI | RGATCY | 5 cut(s) | 853, 2926, 3259, 4426, 5107 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3821 |
| BsuI | GTATCC | 4 cut(s) | 801, 1655, 5461, 5469 |
| BtgI | CCRYGG | 4 cut(s) | 52, 421, 1577, 3423 |
| BtgZI | GCGATG | 2 cut(s) | 3909, 3944 |
| BtsI | GCAGTG | 2 cut(s) | 1124, 1405 |
| BtsIMutI | CAGTG | 7 cut(s) | 1124, 1405, 1820, 2409, 4024, 4409, 5562 |
| BveI | ACCTGC | 3 cut(s) | 694, 2230, 4480 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1274, 3553, 4569 |
| CciI | TCATGA | 1 cut(s) | 1087 |
| CfoI | GCGC | 3 cut(s) | 511, 4024, 5501 |
| Cfr13I | GGNCC | 5 cut(s) | 1246, 2031, 4029, 4338, 4579 |
| Cfr9I | CCCGGG | 1 cut(s) | 4361 |
| CseI | GACGC | 2 cut(s) | 4810, 4925 |
| DraI | TTTAAA | 4 cut(s) | 1954, 2673, 3327, 3864 |
| EaeI | YGGCCR | 2 cut(s) | 1176, 3426 |
| Eam1104I | CTCTTC | 8 cut(s) | 548, 1431, 1938, 3603, 4890, 5024, 5298, 5532 |
| EarI | CTCTTC | 8 cut(s) | 548, 1431, 1938, 3603, 4890, 5024, 5298, 5532 |
| Eco130I | CCWWGG | 6 cut(s) | 52, 149, 204, 421, 3423, 4443 |
| Eco147I | AGGCCT | 1 cut(s) | 2875 |
| Eco24I | GRGCYC | 1 cut(s) | 272 |
| Eco31I | GGTCTC | 1 cut(s) | 670 |
| Eco32I | GATATC | 2 cut(s) | 694, 4638 |
| Eco47I | GGWCC | 3 cut(s) | 1246, 2031, 4338 |
| Eco57I | CTGAAG | 5 cut(s) | 2709, 4473, 4709, 4950, 5586 |
| Eco81I | CCTNAGG | 1 cut(s) | 3821 |
| Eco88I | CYCGRG | 2 cut(s) | 4361, 4695 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1246 |
| EcoRII | CCWGG | 8 cut(s) | 1413, 1482, 1716, 2317, 2712, 3285, 3681, 4816 |
| EcoRV | GATATC | 2 cut(s) | 694, 4638 |
| EcoT14I | CCWWGG | 6 cut(s) | 52, 149, 204, 421, 3423, 4443 |
| EcoT22I | ATGCAT | 3 cut(s) | 1074, 2924, 3416 |
| EcoT38I | GRGCYC | 1 cut(s) | 272 |
| ErhI | CCWWGG | 6 cut(s) | 52, 149, 204, 421, 3423, 4443 |
| Esp3I | CGTCTC | 1 cut(s) | 4828 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2976, 3008, 5508, 5540 |
| FaqI | GGGAC | 4 cut(s) | 3016, 3190, 3564, 4324 |
| FauI | CCCGC | 4 cut(s) | 2205, 4670, 5208, 5522 |
| FauNDI | CATATG | 5 cut(s) | 1888, 3036, 3574, 4153, 5025 |
| FbaI | TGATCA | 5 cut(s) | 316, 1006, 2443, 2980, 3622 |
| FblI | GTMKAC | 3 cut(s) | 1123, 2504, 4914 |
| FriOI | GRGCYC | 1 cut(s) | 272 |
| FspI | TGCGCA | 1 cut(s) | 4023 |
| GlaI | GCGC | 3 cut(s) | 510, 4023, 5500 |
| GsaI | CCCAGC | 1 cut(s) | 5156 |
| GsuI | CTGGAG | 5 cut(s) | 1505, 2073, 2328, 3712, 4090 |
| HaeII | RGCGCY | 1 cut(s) | 5502 |
| HapII | CCGG | 5 cut(s) | 474, 1183, 4362, 4544, 5462 |
| HgaI | GACGC | 2 cut(s) | 4810, 4925 |
| HhaI | GCGC | 3 cut(s) | 511, 4024, 5501 |
| Hin1I | GRCGYC | 1 cut(s) | 4821 |
| Hin6I | GCGC | 3 cut(s) | 509, 4022, 5499 |
| HinP1I | GCGC | 3 cut(s) | 509, 4022, 5499 |
| HincII | GTYRAC | 3 cut(s) | 752, 2505, 4915 |
| HindII | GTYRAC | 3 cut(s) | 752, 2505, 4915 |
| HindIII | AAGCTT | 8 cut(s) | 1982, 2527, 3149, 3875, 4190, 4775, 5094, 5597 |
| HpaII | CCGG | 5 cut(s) | 474, 1183, 4362, 4544, 5462 |
| HphI | GGTGA | 6 cut(s) | 625, 1354, 4660, 4683, 4781, 5029 |
| Hpy166II | GTNNAC | 8 cut(s) | 647, 752, 1040, 1124, 2505, 2539, 4619, 4915 |
| Hpy8I | GTNNAC | 8 cut(s) | 647, 752, 1040, 1124, 2505, 2539, 4619, 4915 |
| Hpy99I | CGWCG | 3 cut(s) | 3950, 4515, 4919 |
| HpyCH4III | ACNGT | 8 cut(s) | 986, 1581, 2184, 2470, 3059, 3620, 3653, 4386 |
| HpyCH4IV | ACGT | 8 cut(s) | 88, 1027, 2216, 2697, 3295, 3868, 3948, 5077 |
| HpySE526I | ACGT | 8 cut(s) | 88, 1027, 2216, 2697, 3295, 3868, 3948, 5077 |
| Hsp92I | GRCGYC | 1 cut(s) | 4821 |
| HspAI | GCGC | 3 cut(s) | 509, 4022, 5499 |
| Kpn2I | TCCGGA | 2 cut(s) | 4543, 5461 |
| Ksp22I | TGATCA | 5 cut(s) | 316, 1006, 2443, 2980, 3622 |
| LguI | GCTCTTC | 1 cut(s) | 5532 |
| LmnI | GCTCC | 8 cut(s) | 778, 1024, 3310, 3455, 3583, 4109, 4460, 5194 |
| MaeII | ACGT | 8 cut(s) | 88, 1027, 2216, 2697, 3295, 3868, 3948, 5077 |
| MfeI | CAATTG | 4 cut(s) | 591, 4271, 5115, 5399 |
| MflI | RGATCY | 5 cut(s) | 853, 2926, 3259, 4426, 5107 |
| MhlI | GDGCHC | 6 cut(s) | 247, 272, 1042, 4465, 5199, 5242 |
| MlsI | TGGCCA | 2 cut(s) | 1178, 3428 |
| MluNI | TGGCCA | 2 cut(s) | 1178, 3428 |
| MlyI | GAGTC | 9 cut(s) | 1954, 2003, 2483, 2642, 3212, 3242, 4670, 4778, 4968 |
| MmeI | TCCRAC | 3 cut(s) | 1100, 2331, 3969 |
| Mox20I | TGGCCA | 2 cut(s) | 1178, 3428 |
| Mph1103I | ATGCAT | 3 cut(s) | 1074, 2924, 3416 |
| MroI | TCCGGA | 2 cut(s) | 4543, 5461 |
| MroXI | GAANNNNTTC | 4 cut(s) | 939, 1194, 1537, 2814 |
| MscI | TGGCCA | 2 cut(s) | 1178, 3428 |
| MslI | CAYNNNNRTG | 9 cut(s) | 57, 426, 462, 1582, 3381, 3422, 3479, 3783, 5145 |
| Msp20I | TGGCCA | 2 cut(s) | 1178, 3428 |
| MspA1I | CMGCKG | 4 cut(s) | 2135, 2200, 2236, 2831 |
| MspCI | CTTAAG | 1 cut(s) | 3185 |
| MspI | CCGG | 5 cut(s) | 474, 1183, 4362, 4544, 5462 |
| MunI | CAATTG | 4 cut(s) | 591, 4271, 5115, 5399 |
| Mva1269I | GAATGC | 5 cut(s) | 913, 1333, 3376, 4243, 5374 |
| MvaI | CCWGG | 8 cut(s) | 1415, 1484, 1718, 2319, 2714, 3287, 3683, 4818 |
| NciI | CCSGG | 2 cut(s) | 4362, 4363 |
| NcoI | CCATGG | 3 cut(s) | 52, 421, 3423 |
| NdeI | CATATG | 5 cut(s) | 1888, 3036, 3574, 4153, 5025 |
| NmuCI | GTSAC | 7 cut(s) | 3493, 3614, 3643, 3814, 4571, 4704, 5035 |
| NsbI | TGCGCA | 1 cut(s) | 4023 |
| NsiI | ATGCAT | 3 cut(s) | 1074, 2924, 3416 |
| NspI | RCATGY | 7 cut(s) | 397, 1072, 2922, 3529, 4229, 4625, 4712 |
| NspV | TTCGAA | 1 cut(s) | 2420 |
| OliI | CACNNNNGTG | 1 cut(s) | 1582 |
| PacI | TTAATTAA | 1 cut(s) | 2898 |
| PaeI | GCATGC | 1 cut(s) | 3529 |
| PagI | TCATGA | 1 cut(s) | 1087 |
| PceI | AGGCCT | 1 cut(s) | 2875 |
| PciI | ACATGT | 4 cut(s) | 393, 4225, 4621, 4708 |
| PciSI | GCTCTTC | 1 cut(s) | 5532 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1694 |
| PctI | GAATGC | 5 cut(s) | 913, 1333, 3376, 4243, 5374 |
| PdmI | GAANNNNTTC | 4 cut(s) | 939, 1194, 1537, 2814 |
| Pfl23II | CGTACG | 1 cut(s) | 1024 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 210, 3707 |
| PleI | GAGTC | 9 cut(s) | 1953, 2002, 2482, 2641, 3211, 3242, 4669, 4778, 4967 |
| PpsI | GAGTC | 9 cut(s) | 1953, 2002, 2482, 2641, 3211, 3242, 4669, 4778, 4967 |
| Ppu21I | YACGTR | 2 cut(s) | 89, 1028 |
| PpuMI | RGGWCCY | 1 cut(s) | 1246 |
| PscI | ACATGT | 4 cut(s) | 393, 4225, 4621, 4708 |
| PshBI | ATTAAT | 3 cut(s) | 66, 2550, 5358 |
| PsiI | TTATAA | 1 cut(s) | 3230 |
| Psp1406I | AACGTT | 2 cut(s) | 3868, 5077 |
| Psp5II | RGGWCCY | 1 cut(s) | 1246 |
| Psp6I | CCWGG | 8 cut(s) | 1413, 1482, 1716, 2317, 2712, 3285, 3681, 4816 |
| PspFI | CCCAGC | 1 cut(s) | 5152 |
| PspGI | CCWGG | 8 cut(s) | 1413, 1482, 1716, 2317, 2712, 3285, 3681, 4816 |
| PspLI | CGTACG | 1 cut(s) | 1024 |
| PspPI | GGNCC | 5 cut(s) | 1246, 2031, 4029, 4338, 4579 |
| PspPPI | RGGWCCY | 1 cut(s) | 1246 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3552, 3584 |
| PstI | CTGCAG | 4 cut(s) | 1279, 2953, 3220, 4669 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1274, 3553, 4569 |
| PsuI | RGATCY | 5 cut(s) | 853, 2926, 3259, 4426, 5107 |
| PvuII | CAGCTG | 1 cut(s) | 2831 |
| RseI | CAYNNNNRTG | 9 cut(s) | 57, 426, 462, 1582, 3381, 3422, 3479, 3783, 5145 |
| SalI | GTCGAC | 2 cut(s) | 2503, 4913 |
| SapI | GCTCTTC | 1 cut(s) | 5532 |
| Sau96I | GGNCC | 5 cut(s) | 1246, 2031, 4029, 4338, 4579 |
| ScaI | AGTACT | 2 cut(s) | 1693, 4730 |
| SchI | GAGTC | 9 cut(s) | 1954, 2003, 2483, 2642, 3212, 3242, 4670, 4778, 4968 |
| SduI | GDGCHC | 6 cut(s) | 247, 272, 1042, 4465, 5199, 5242 |
| SfcI | CTRYAG | 7 cut(s) | 1275, 2949, 3216, 3300, 4665, 4938, 5340 |
| SfuI | TTCGAA | 1 cut(s) | 2420 |
| SinI | GGWCC | 3 cut(s) | 1246, 2031, 4338 |
| SmaI | CCCGGG | 1 cut(s) | 4363 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 57, 426, 462, 1582, 3381, 3422, 3479, 3783, 5145 |
| SmlI | CTYRAG | 3 cut(s) | 493, 2530, 3185 |
| SmoI | CTYRAG | 3 cut(s) | 493, 2530, 3185 |
| SphI | GCATGC | 1 cut(s) | 3529 |
| SseBI | AGGCCT | 1 cut(s) | 2875 |
| SspI | AATATT | 2 cut(s) | 94, 2905 |
| StuI | AGGCCT | 1 cut(s) | 2875 |
| StyI | CCWWGG | 6 cut(s) | 52, 149, 204, 421, 3423, 4443 |
| TaaI | ACNGT | 8 cut(s) | 986, 1581, 2184, 2470, 3059, 3620, 3653, 4386 |
| TaiI | ACGT | 8 cut(s) | 91, 1030, 2219, 2700, 3298, 3871, 3951, 5080 |
| TatI | WGTACW | 7 cut(s) | 812, 1065, 1691, 3800, 4047, 4585, 4728 |
| TauI | GCSGC | 5 cut(s) | 2138, 2239, 2723, 3376, 5050 |
| TscAI | CASTG | 7 cut(s) | 1124, 1405, 1820, 2416, 4031, 4416, 5569 |
| TseFI | GTSAC | 7 cut(s) | 3493, 3614, 3643, 3814, 4571, 4704, 5035 |
| Tsp45I | GTSAC | 7 cut(s) | 3493, 3614, 3643, 3814, 4571, 4704, 5035 |
| TspGWI | ACGGA | 4 cut(s) | 1607, 3191, 4051, 4252 |
| TspMI | CCCGGG | 1 cut(s) | 4361 |
| TspRI | CASTG | 7 cut(s) | 1124, 1405, 1820, 2416, 4031, 4416, 5569 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 210, 3707 |
| Vha464I | CTTAAG | 1 cut(s) | 3185 |
| VneI | GTGCAC | 1 cut(s) | 1038 |
| VpaK11BI | GGWCC | 3 cut(s) | 1246, 2031, 4338 |
| VspI | ATTAAT | 3 cut(s) | 66, 2550, 5358 |
| XapI | RAATTY | 9 cut(s) | 302, 311, 447, 577, 935, 1137, 1747, 1773, 2514 |
| XbaI | TCTAGA | 3 cut(s) | 2159, 3407, 3754 |
| XceI | RCATGY | 7 cut(s) | 397, 1072, 2922, 3529, 4229, 4625, 4712 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2084, 3481, 4397 |
| XmaI | CCCGGG | 1 cut(s) | 4361 |
| XmiI | GTMKAC | 3 cut(s) | 1123, 2504, 4914 |
| XmnI | GAANNNNTTC | 4 cut(s) | 939, 1194, 1537, 2814 |
| ZrmI | AGTACT | 2 cut(s) | 1693, 4730 |
| Zsp2I | ATGCAT | 3 cut(s) | 1074, 2924, 3416 |