TATA-binding protein-associated factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54280 AT3G54280 |
| fragaria_vesca | FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 |
| malus_domestica | MD03G1000900.v1.1 MD11G1000100.v1.1 |
| prunus_persica | Prupe.6G000100_v2.0.a1 |
| pyrus_communis | pycom03g00100 pycom11g00010 |
| rosa_chinensis | RchiOBHm_Chr5g0084181 |
| rosa_laevigata | RLG00000037090 |
| rosa_multiflora | Rmu_sc0005537.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00000450 |
| rosa_rugosa | Rorug05G0489600 Rorug05G0489700 |
| rosa_samantha | Rh5AG542400 Rh5BG568400 Rh5CG590000 Rh5DG576400 |
| rosa_wichuraiana | Rw5G050450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3479 |
| AatII | GACGTC | 1 cut(s) | 220 |
| Acc16I | TGCGCA | 1 cut(s) | 4272 |
| Acc36I | ACCTGC | 3 cut(s) | 943, 2479, 4729 |
| AccB1I | GGYRCC | 2 cut(s) | 1822, 5183 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 459, 3956 |
| AccI | GTMKAC | 2 cut(s) | 1372, 5163 |
| AccIII | TCCGGA | 1 cut(s) | 5710 |
| AclI | AACGTT | 2 cut(s) | 4117, 5326 |
| AcoI | YGGCCR | 2 cut(s) | 1425, 3675 |
| AcsI | RAATTY | 9 cut(s) | 551, 560, 696, 826, 1184, 1386, 1996, 2022, 2763 |
| AcuI | CTGAAG | 5 cut(s) | 2958, 4722, 4958, 5199, 5835 |
| AcyI | GRCGYC | 2 cut(s) | 217, 5070 |
| AflIII | ACRYGT | 4 cut(s) | 642, 4474, 4870, 4957 |
| AjiI | CACGTC | 1 cut(s) | 78 |
| AjnI | CCWGG | 8 cut(s) | 1662, 1731, 1965, 2566, 2961, 3534, 3930, 5065 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2837, 2869 |
| AleI | CACNNNNGTG | 1 cut(s) | 1831 |
| Alw21I | GWGCWC | 4 cut(s) | 496, 1291, 4714, 5448 |
| Alw26I | GTCTC | 9 cut(s) | 788, 919, 1255, 1888, 3179, 4624, 5051, 5077, 5250 |
| Alw44I | GTGCAC | 1 cut(s) | 1287 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1523, 3802, 4818 |
| Ama87I | CYCGRG | 3 cut(s) | 135, 4610, 4944 |
| Aor13HI | TCCGGA | 1 cut(s) | 5710 |
| ApaI | GGGCCC | 1 cut(s) | 4832 |
| ApaLI | GTGCAC | 1 cut(s) | 1287 |
| ApoI | RAATTY | 9 cut(s) | 551, 560, 696, 826, 1184, 1386, 1996, 2022, 2763 |
| AseI | ATTAAT | 3 cut(s) | 315, 2799, 5607 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1188, 1443, 1786, 3063 |
| AspLEI | GCGC | 3 cut(s) | 124, 4273, 5750 |
| AspS9I | GGNCC | 6 cut(s) | 1495, 2280, 4278, 4587, 4828, 4829 |
| AsuC2I | CCSGG | 2 cut(s) | 4611, 4612 |
| AsuHPI | GGTGA | 6 cut(s) | 874, 1603, 4909, 4932, 5030, 5278 |
| AsuII | TTCGAA | 1 cut(s) | 2669 |
| AvaI | CYCGRG | 3 cut(s) | 135, 4610, 4944 |
| AvaII | GGWCC | 3 cut(s) | 1495, 2280, 4587 |
| AxyI | CCTNAGG | 1 cut(s) | 4070 |
| BaeGI | GKGCMC | 3 cut(s) | 1291, 4832, 5491 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 5682, 5715 |
| BalI | TGGCCA | 2 cut(s) | 1427, 3677 |
| BamHI | GGATCC | 3 cut(s) | 3175, 3508, 4675 |
| BanI | GGYRCC | 2 cut(s) | 1822, 5183 |
| BanII | GRGCYC | 2 cut(s) | 521, 4832 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 964, 996, 2412, 2444, 3909, 3941 |
| BauI | CACGAG | 1 cut(s) | 3936 |
| BbsI | GAAGAC | 5 cut(s) | 39, 285, 2100, 3309, 4352 |
| Bbv12I | GWGCWC | 4 cut(s) | 496, 1291, 4714, 5448 |
| BbvCI | CCTCAGC | 2 cut(s) | 3081, 3513 |
| BceAI | ACGGC | 1 cut(s) | 5171 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 60, 94 |
| BciT130I | CCWGG | 8 cut(s) | 1664, 1733, 1967, 2568, 2963, 3536, 3932, 5067 |
| BciVI | GTATCC | 4 cut(s) | 1050, 1904, 5710, 5718 |
| BclI | TGATCA | 5 cut(s) | 565, 1255, 2692, 3229, 3871 |
| BcnI | CCSGG | 2 cut(s) | 4611, 4612 |
| BcoDI | GTCTC | 9 cut(s) | 788, 919, 1255, 1888, 3179, 4624, 5051, 5077, 5250 |
| BfmI | CTRYAG | 6 cut(s) | 1524, 3198, 3465, 3549, 4914, 5589 |
| BfoI | RGCGCY | 1 cut(s) | 5751 |
| BfuAI | ACCTGC | 3 cut(s) | 943, 2479, 4729 |
| BfuI | GTATCC | 4 cut(s) | 1050, 1904, 5710, 5718 |
| BlpI | GCTNAGC | 1 cut(s) | 4687 |
| BmcAI | AGTACT | 2 cut(s) | 1942, 4979 |
| Bme18I | GGWCC | 3 cut(s) | 1495, 2280, 4587 |
| BmeT110I | CYCGRG | 3 cut(s) | 135, 4610, 4944 |
| BmgBI | CACGTC | 1 cut(s) | 78 |
| BmgT120I | GGNCC | 6 cut(s) | 1495, 2280, 4278, 4587, 4828, 4829 |
| BmrI | ACTGGG | 3 cut(s) | 1763, 3812, 4285 |
| BmuI | ACTGGG | 3 cut(s) | 1763, 3812, 4285 |
| BpiI | GAAGAC | 5 cut(s) | 39, 285, 2100, 3309, 4352 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 178, 210, 1073, 1105, 3086, 3118, 3496, 3528 |
| BpmI | CTGGAG | 5 cut(s) | 1754, 2322, 2577, 3961, 4339 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3081, 3513 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4687 |
| Bpu14I | TTCGAA | 1 cut(s) | 2669 |
| BpuEI | CTTGAG | 2 cut(s) | 763, 2800 |
| BpuMI | CCSGG | 2 cut(s) | 4611, 4612 |
| BsaAI | YACGTR | 2 cut(s) | 338, 1277 |
| BsaHI | GRCGYC | 2 cut(s) | 217, 5070 |
| BsaI | GGTCTC | 1 cut(s) | 919 |
| BsaWI | WCCGGW | 1 cut(s) | 5710 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1233, 1263 |
| Bse21I | CCTNAGG | 1 cut(s) | 4070 |
| Bse3DI | GCAATG | 4 cut(s) | 66, 1577, 5060, 5484 |
| BseAI | TCCGGA | 1 cut(s) | 5710 |
| BseBI | CCWGG | 8 cut(s) | 1664, 1733, 1967, 2568, 2963, 3536, 3932, 5067 |
| BseMI | GCAATG | 4 cut(s) | 66, 1577, 5060, 5484 |
| BseRI | GAGGAG | 1 cut(s) | 4087 |
| BseSI | GKGCMC | 3 cut(s) | 1291, 4832, 5491 |
| BseYI | CCCAGC | 2 cut(s) | 11, 5401 |
| BsgI | GTGCAG | 5 cut(s) | 2361, 2927, 2985, 3789, 4005 |
| BshNI | GGYRCC | 2 cut(s) | 1822, 5183 |
| BsiHKAI | GWGCWC | 4 cut(s) | 496, 1291, 4714, 5448 |
| BsiHKCI | CYCGRG | 3 cut(s) | 135, 4610, 4944 |
| BsiSI | CCGG | 4 cut(s) | 723, 1432, 4611, 5711 |
| BsiWI | CGTACG | 1 cut(s) | 1273 |
| BslFI | GGGAC | 3 cut(s) | 3439, 3813, 4573 |
| BsmAI | GTCTC | 9 cut(s) | 788, 919, 1255, 1888, 3179, 4624, 5051, 5077, 5250 |
| BsmBI | CGTCTC | 1 cut(s) | 5077 |
| BsmFI | GGGAC | 3 cut(s) | 3439, 3813, 4573 |
| BsmI | GAATGC | 5 cut(s) | 1162, 1582, 3625, 4492, 5623 |
| Bso31I | GGTCTC | 1 cut(s) | 919 |
| BsoBI | CYCGRG | 3 cut(s) | 135, 4610, 4944 |
| Bsp119I | TTCGAA | 1 cut(s) | 2669 |
| Bsp120I | GGGCCC | 1 cut(s) | 4828 |
| Bsp1286I | GDGCHC | 7 cut(s) | 496, 521, 1291, 4714, 4832, 5448, 5491 |
| Bsp13I | TCCGGA | 1 cut(s) | 5710 |
| Bsp1407I | TGTACA | 1 cut(s) | 4834 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4687 |
| Bsp19I | CCATGG | 3 cut(s) | 301, 670, 3672 |
| BspEI | TCCGGA | 1 cut(s) | 5710 |
| BspHI | TCATGA | 1 cut(s) | 1336 |
| BspMAI | CTGCAG | 4 cut(s) | 1528, 3202, 3469, 4918 |
| BspMI | ACCTGC | 3 cut(s) | 943, 2479, 4729 |
| BspQI | GCTCTTC | 1 cut(s) | 5781 |
| BspT104I | TTCGAA | 1 cut(s) | 2669 |
| BspT107I | GGYRCC | 2 cut(s) | 1822, 5183 |
| BspTNI | GGTCTC | 1 cut(s) | 919 |
| BsrDI | GCAATG | 4 cut(s) | 66, 1577, 5060, 5484 |
| BsrGI | TGTACA | 1 cut(s) | 4834 |
| BssNI | GRCGYC | 2 cut(s) | 217, 5070 |
| BssSI | CACGAG | 1 cut(s) | 3936 |
| BssT1I | CCWWGG | 6 cut(s) | 301, 398, 453, 670, 3672, 4692 |
| Bst2BI | CACGAG | 1 cut(s) | 3936 |
| Bst2UI | CCWGG | 8 cut(s) | 1664, 1733, 1967, 2568, 2963, 3536, 3932, 5067 |
| Bst6I | CTCTTC | 8 cut(s) | 797, 1680, 2187, 3852, 5139, 5273, 5547, 5781 |
| BstACI | GRCGYC | 2 cut(s) | 217, 5070 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1441, 1523, 3992, 4744, 5618 |
| BstAUI | TGTACA | 1 cut(s) | 4834 |
| BstBAI | YACGTR | 2 cut(s) | 338, 1277 |
| BstBI | TTCGAA | 1 cut(s) | 2669 |
| BstDSI | CCRYGG | 4 cut(s) | 301, 670, 1826, 3672 |
| BstH2I | RGCGCY | 1 cut(s) | 5751 |
| BstHHI | GCGC | 3 cut(s) | 124, 4273, 5750 |
| BstMAI | GTCTC | 9 cut(s) | 788, 919, 1255, 1888, 3179, 4624, 5051, 5077, 5250 |
| BstNI | CCWGG | 8 cut(s) | 1664, 1733, 1967, 2568, 2963, 3536, 3932, 5067 |
| BstNSI | RCATGY | 6 cut(s) | 646, 1321, 3171, 3778, 4478, 4874 |
| BstSFI | CTRYAG | 6 cut(s) | 1524, 3198, 3465, 3549, 4914, 5589 |
| BstSLI | GKGCMC | 3 cut(s) | 1291, 4832, 5491 |
| BstV2I | GAAGAC | 5 cut(s) | 39, 285, 2100, 3309, 4352 |
| BstX2I | RGATCY | 5 cut(s) | 1102, 3175, 3508, 4675, 5356 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 308, 1833, 4334 |
| BstYI | RGATCY | 5 cut(s) | 1102, 3175, 3508, 4675, 5356 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4070 |
| BsuI | GTATCC | 4 cut(s) | 1050, 1904, 5710, 5718 |
| BtgI | CCRYGG | 4 cut(s) | 301, 670, 1826, 3672 |
| BtgZI | GCGATG | 2 cut(s) | 4158, 4193 |
| BtrI | CACGTC | 1 cut(s) | 78 |
| BtsI | GCAGTG | 2 cut(s) | 1373, 1654 |
| BtsIMutI | CAGTG | 8 cut(s) | 758, 1373, 1654, 2069, 2658, 4273, 4658, 5811 |
| BveI | ACCTGC | 3 cut(s) | 943, 2479, 4729 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1523, 3802, 4818 |
| CciI | TCATGA | 1 cut(s) | 1336 |
| CfoI | GCGC | 3 cut(s) | 124, 4273, 5750 |
| Cfr13I | GGNCC | 6 cut(s) | 1495, 2280, 4278, 4587, 4828, 4829 |
| Cfr9I | CCCGGG | 1 cut(s) | 4610 |
| CseI | GACGC | 2 cut(s) | 5059, 5174 |
| DraI | TTTAAA | 4 cut(s) | 2203, 2922, 3576, 4113 |
| EaeI | YGGCCR | 2 cut(s) | 1425, 3675 |
| Eam1104I | CTCTTC | 8 cut(s) | 797, 1680, 2187, 3852, 5139, 5273, 5547, 5781 |
| EarI | CTCTTC | 8 cut(s) | 797, 1680, 2187, 3852, 5139, 5273, 5547, 5781 |
| Eco130I | CCWWGG | 6 cut(s) | 301, 398, 453, 670, 3672, 4692 |
| Eco147I | AGGCCT | 1 cut(s) | 3124 |
| Eco24I | GRGCYC | 2 cut(s) | 521, 4832 |
| Eco31I | GGTCTC | 1 cut(s) | 919 |
| Eco32I | GATATC | 3 cut(s) | 154, 943, 4887 |
| Eco47I | GGWCC | 3 cut(s) | 1495, 2280, 4587 |
| Eco57I | CTGAAG | 5 cut(s) | 2958, 4722, 4958, 5199, 5835 |
| Eco81I | CCTNAGG | 1 cut(s) | 4070 |
| Eco88I | CYCGRG | 3 cut(s) | 135, 4610, 4944 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1495, 4829 |
| EcoRII | CCWGG | 8 cut(s) | 1662, 1731, 1965, 2566, 2961, 3534, 3930, 5065 |
| EcoRV | GATATC | 3 cut(s) | 154, 943, 4887 |
| EcoT14I | CCWWGG | 6 cut(s) | 301, 398, 453, 670, 3672, 4692 |
| EcoT22I | ATGCAT | 3 cut(s) | 1323, 3173, 3665 |
| EcoT38I | GRGCYC | 2 cut(s) | 521, 4832 |
| ErhI | CCWWGG | 6 cut(s) | 301, 398, 453, 670, 3672, 4692 |
| Esp3I | CGTCTC | 1 cut(s) | 5077 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3225, 3257, 5757, 5789 |
| FaqI | GGGAC | 3 cut(s) | 3439, 3813, 4573 |
| FauI | CCCGC | 4 cut(s) | 2454, 4919, 5457, 5771 |
| FauNDI | CATATG | 5 cut(s) | 2137, 3285, 3823, 4402, 5274 |
| FbaI | TGATCA | 5 cut(s) | 565, 1255, 2692, 3229, 3871 |
| FblI | GTMKAC | 2 cut(s) | 1372, 5163 |
| FriOI | GRGCYC | 2 cut(s) | 521, 4832 |
| FspI | TGCGCA | 1 cut(s) | 4272 |
| GlaI | GCGC | 3 cut(s) | 123, 4272, 5749 |
| GsaI | CCCAGC | 2 cut(s) | 15, 5405 |
| GsuI | CTGGAG | 5 cut(s) | 1754, 2322, 2577, 3961, 4339 |
| HaeII | RGCGCY | 1 cut(s) | 5751 |
| HapII | CCGG | 4 cut(s) | 723, 1432, 4611, 5711 |
| HgaI | GACGC | 2 cut(s) | 5059, 5174 |
| HhaI | GCGC | 3 cut(s) | 124, 4273, 5750 |
| Hin1I | GRCGYC | 2 cut(s) | 217, 5070 |
| Hin6I | GCGC | 3 cut(s) | 122, 4271, 5748 |
| HinP1I | GCGC | 3 cut(s) | 122, 4271, 5748 |
| HincII | GTYRAC | 2 cut(s) | 1001, 5164 |
| HindII | GTYRAC | 2 cut(s) | 1001, 5164 |
| HindIII | AAGCTT | 9 cut(s) | 88, 2231, 2776, 3398, 4124, 4439, 5024, 5343, 5846 |
| HpaII | CCGG | 4 cut(s) | 723, 1432, 4611, 5711 |
| HphI | GGTGA | 6 cut(s) | 874, 1603, 4909, 4932, 5030, 5278 |
| Hpy166II | GTNNAC | 8 cut(s) | 896, 1001, 1289, 1373, 2754, 2788, 4868, 5164 |
| Hpy8I | GTNNAC | 8 cut(s) | 896, 1001, 1289, 1373, 2754, 2788, 4868, 5164 |
| Hpy99I | CGWCG | 6 cut(s) | 82, 219, 222, 4199, 4764, 5168 |
| Hsp92I | GRCGYC | 2 cut(s) | 217, 5070 |
| HspAI | GCGC | 3 cut(s) | 122, 4271, 5748 |
| Kpn2I | TCCGGA | 1 cut(s) | 5710 |
| Ksp22I | TGATCA | 5 cut(s) | 565, 1255, 2692, 3229, 3871 |
| LguI | GCTCTTC | 1 cut(s) | 5781 |
| LmnI | GCTCC | 9 cut(s) | 1027, 1273, 2058, 3559, 3704, 3832, 4358, 4709, 5443 |
| MfeI | CAATTG | 4 cut(s) | 840, 4520, 5364, 5648 |
| MflI | RGATCY | 5 cut(s) | 1102, 3175, 3508, 4675, 5356 |
| MhlI | GDGCHC | 7 cut(s) | 496, 521, 1291, 4714, 4832, 5448, 5491 |
| MlsI | TGGCCA | 2 cut(s) | 1427, 3677 |
| MluNI | TGGCCA | 2 cut(s) | 1427, 3677 |
| MlyI | GAGTC | 8 cut(s) | 2203, 2252, 2732, 2891, 3461, 4919, 5027, 5217 |
| MmeI | TCCRAC | 3 cut(s) | 1349, 2580, 4218 |
| Mox20I | TGGCCA | 2 cut(s) | 1427, 3677 |
| Mph1103I | ATGCAT | 3 cut(s) | 1323, 3173, 3665 |
| MroI | TCCGGA | 1 cut(s) | 5710 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1188, 1443, 1786, 3063 |
| MscI | TGGCCA | 2 cut(s) | 1427, 3677 |
| Msp20I | TGGCCA | 2 cut(s) | 1427, 3677 |
| MspA1I | CMGCKG | 4 cut(s) | 2384, 2449, 2485, 3080 |
| MspI | CCGG | 4 cut(s) | 723, 1432, 4611, 5711 |
| MunI | CAATTG | 4 cut(s) | 840, 4520, 5364, 5648 |
| Mva1269I | GAATGC | 5 cut(s) | 1162, 1582, 3625, 4492, 5623 |
| MvaI | CCWGG | 8 cut(s) | 1664, 1733, 1967, 2568, 2963, 3536, 3932, 5067 |
| NciI | CCSGG | 2 cut(s) | 4611, 4612 |
| NcoI | CCATGG | 3 cut(s) | 301, 670, 3672 |
| NdeI | CATATG | 5 cut(s) | 2137, 3285, 3823, 4402, 5274 |
| NmuCI | GTSAC | 7 cut(s) | 3742, 3863, 3892, 4063, 4820, 4953, 5284 |
| NsbI | TGCGCA | 1 cut(s) | 4272 |
| NsiI | ATGCAT | 3 cut(s) | 1323, 3173, 3665 |
| NspI | RCATGY | 6 cut(s) | 646, 1321, 3171, 3778, 4478, 4874 |
| NspV | TTCGAA | 1 cut(s) | 2669 |
| OliI | CACNNNNGTG | 1 cut(s) | 1831 |
| PacI | TTAATTAA | 1 cut(s) | 3147 |
| PaeI | GCATGC | 1 cut(s) | 3778 |
| PaeR7I | CTCGAG | 1 cut(s) | 135 |
| PagI | TCATGA | 1 cut(s) | 1336 |
| PceI | AGGCCT | 1 cut(s) | 3124 |
| PciI | ACATGT | 3 cut(s) | 642, 4474, 4870 |
| PciSI | GCTCTTC | 1 cut(s) | 5781 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1943 |
| PctI | GAATGC | 5 cut(s) | 1162, 1582, 3625, 4492, 5623 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1188, 1443, 1786, 3063 |
| Pfl23II | CGTACG | 1 cut(s) | 1273 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 459, 3956 |
| PleI | GAGTC | 8 cut(s) | 2202, 2251, 2731, 2890, 3460, 4918, 5027, 5216 |
| PpsI | GAGTC | 8 cut(s) | 2202, 2251, 2731, 2890, 3460, 4918, 5027, 5216 |
| Ppu21I | YACGTR | 2 cut(s) | 338, 1277 |
| PpuMI | RGGWCCY | 1 cut(s) | 1495 |
| PscI | ACATGT | 3 cut(s) | 642, 4474, 4870 |
| PshBI | ATTAAT | 3 cut(s) | 315, 2799, 5607 |
| PsiI | TTATAA | 1 cut(s) | 3479 |
| Psp1406I | AACGTT | 2 cut(s) | 4117, 5326 |
| Psp5II | RGGWCCY | 1 cut(s) | 1495 |
| Psp6I | CCWGG | 8 cut(s) | 1662, 1731, 1965, 2566, 2961, 3534, 3930, 5065 |
| PspFI | CCCAGC | 2 cut(s) | 11, 5401 |
| PspGI | CCWGG | 8 cut(s) | 1662, 1731, 1965, 2566, 2961, 3534, 3930, 5065 |
| PspLI | CGTACG | 1 cut(s) | 1273 |
| PspOMI | GGGCCC | 1 cut(s) | 4828 |
| PspPI | GGNCC | 6 cut(s) | 1495, 2280, 4278, 4587, 4828, 4829 |
| PspPPI | RGGWCCY | 1 cut(s) | 1495 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3801, 3833 |
| PstI | CTGCAG | 4 cut(s) | 1528, 3202, 3469, 4918 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1523, 3802, 4818 |
| PsuI | RGATCY | 5 cut(s) | 1102, 3175, 3508, 4675, 5356 |
| PvuII | CAGCTG | 1 cut(s) | 3080 |
| SalI | GTCGAC | 1 cut(s) | 5162 |
| SapI | GCTCTTC | 1 cut(s) | 5781 |
| Sau96I | GGNCC | 6 cut(s) | 1495, 2280, 4278, 4587, 4828, 4829 |
| ScaI | AGTACT | 2 cut(s) | 1942, 4979 |
| SchI | GAGTC | 8 cut(s) | 2203, 2252, 2732, 2891, 3461, 4919, 5027, 5217 |
| SduI | GDGCHC | 7 cut(s) | 496, 521, 1291, 4714, 4832, 5448, 5491 |
| SfcI | CTRYAG | 6 cut(s) | 1524, 3198, 3465, 3549, 4914, 5589 |
| Sfr274I | CTCGAG | 1 cut(s) | 135 |
| SfuI | TTCGAA | 1 cut(s) | 2669 |
| SinI | GGWCC | 3 cut(s) | 1495, 2280, 4587 |
| SlaI | CTCGAG | 1 cut(s) | 135 |
| SmaI | CCCGGG | 1 cut(s) | 4612 |
| SmlI | CTYRAG | 3 cut(s) | 135, 742, 2779 |
| SmoI | CTYRAG | 3 cut(s) | 135, 742, 2779 |
| SphI | GCATGC | 1 cut(s) | 3778 |
| SseBI | AGGCCT | 1 cut(s) | 3124 |
| SspI | AATATT | 2 cut(s) | 343, 3154 |
| StuI | AGGCCT | 1 cut(s) | 3124 |
| StyI | CCWWGG | 6 cut(s) | 301, 398, 453, 670, 3672, 4692 |
| TatI | WGTACW | 7 cut(s) | 1061, 1314, 1940, 4049, 4296, 4834, 4977 |
| TauI | GCSGC | 5 cut(s) | 2387, 2488, 2972, 3625, 5299 |
| TscAI | CASTG | 8 cut(s) | 765, 1373, 1654, 2069, 2665, 4280, 4665, 5818 |
| TseFI | GTSAC | 7 cut(s) | 3742, 3863, 3892, 4063, 4820, 4953, 5284 |
| Tsp45I | GTSAC | 7 cut(s) | 3742, 3863, 3892, 4063, 4820, 4953, 5284 |
| TspGWI | ACGGA | 3 cut(s) | 1856, 3440, 4300 |
| TspMI | CCCGGG | 1 cut(s) | 4610 |
| TspRI | CASTG | 8 cut(s) | 765, 1373, 1654, 2069, 2665, 4280, 4665, 5818 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 459, 3956 |
| VneI | GTGCAC | 1 cut(s) | 1287 |
| VpaK11BI | GGWCC | 3 cut(s) | 1495, 2280, 4587 |
| VspI | ATTAAT | 3 cut(s) | 315, 2799, 5607 |
| XapI | RAATTY | 9 cut(s) | 551, 560, 696, 826, 1184, 1386, 1996, 2022, 2763 |
| XbaI | TCTAGA | 3 cut(s) | 2408, 3656, 4003 |
| XceI | RCATGY | 6 cut(s) | 646, 1321, 3171, 3778, 4478, 4874 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2333, 3730, 4646 |
| XhoI | CTCGAG | 1 cut(s) | 135 |
| XmaI | CCCGGG | 1 cut(s) | 4610 |
| XmiI | GTMKAC | 2 cut(s) | 1372, 5163 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1188, 1443, 1786, 3063 |
| ZraI | GACGTC | 1 cut(s) | 218 |
| ZrmI | AGTACT | 2 cut(s) | 1942, 4979 |
| Zsp2I | ATGCAT | 3 cut(s) | 1323, 3173, 3665 |