TATA-binding protein-associated factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54280 AT3G54280 |
| fragaria_vesca | FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 |
| malus_domestica | MD03G1000900.v1.1 MD11G1000100.v1.1 |
| prunus_persica | Prupe.6G000100_v2.0.a1 |
| pyrus_communis | pycom03g00100 pycom11g00010 |
| rosa_chinensis | RchiOBHm_Chr5g0084181 |
| rosa_laevigata | RLG00000037090 |
| rosa_multiflora | Rmu_sc0005537.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00000450 |
| rosa_rugosa | Rorug05G0489600 Rorug05G0489700 |
| rosa_samantha | Rh5AG542400 Rh5BG568400 Rh5CG590000 Rh5DG576400 |
| rosa_wichuraiana | Rw5G050450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 490 |
| Acc36I | ACCTGC | 3 cut(s) | 1249, 2779, 5029 |
| Acc65I | GGTACC | 1 cut(s) | 637 |
| AccB1I | GGYRCC | 3 cut(s) | 637, 2122, 5843 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 622, 6136 |
| AccBSI | CCGCTC | 1 cut(s) | 194 |
| AccI | GTMKAC | 2 cut(s) | 1672, 3053 |
| AccII | CGCG | 1 cut(s) | 466 |
| AclI | AACGTT | 4 cut(s) | 336, 2332, 4417, 5626 |
| AcoI | YGGCCR | 1 cut(s) | 3975 |
| AcsI | RAATTY | 8 cut(s) | 818, 966, 1484, 2296, 2322, 4298, 4434, 6017 |
| AcuI | CTGAAG | 7 cut(s) | 800, 1679, 3195, 3747, 5022, 5258, 5414 |
| AcyI | GRCGYC | 3 cut(s) | 487, 2123, 2579 |
| AfeI | AGCGCT | 1 cut(s) | 4652 |
| AflII | CTTAAG | 2 cut(s) | 1289, 3734 |
| AflIII | ACRYGT | 1 cut(s) | 5170 |
| AgeI | ACCGGT | 1 cut(s) | 3606 |
| AhlI | ACTAGT | 3 cut(s) | 254, 3056, 5419 |
| AjnI | CCWGG | 7 cut(s) | 1017, 1788, 2866, 3834, 4909, 5365, 6040 |
| AleI | CACNNNNGTG | 1 cut(s) | 2131 |
| Alw21I | GWGCWC | 8 cut(s) | 131, 394, 766, 1591, 4988, 5014, 5748, 5791 |
| Alw26I | GTCTC | 8 cut(s) | 26, 1189, 1343, 1555, 1634, 3759, 5170, 5550 |
| Alw44I | GTGCAC | 1 cut(s) | 1587 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 1768, 1823, 1850, 3820, 5118 |
| Ama87I | CYCGRG | 2 cut(s) | 2670, 5093 |
| Aor51HI | AGCGCT | 1 cut(s) | 4652 |
| ApaLI | GTGCAC | 1 cut(s) | 1587 |
| ApoI | RAATTY | 8 cut(s) | 818, 966, 1484, 2296, 2322, 4298, 4434, 6017 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 704, 716, 736, 748 |
| AseI | ATTAAT | 3 cut(s) | 585, 3099, 5907 |
| AsiGI | ACCGGT | 1 cut(s) | 3606 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1488, 5325 |
| Asp718I | GGTACC | 1 cut(s) | 637 |
| AspLEI | GCGC | 4 cut(s) | 7, 466, 2125, 4653 |
| AspS9I | GGNCC | 8 cut(s) | 1124, 1795, 2136, 2253, 4240, 4578, 4711, 4887 |
| AsuHPI | GGTGA | 2 cut(s) | 1155, 5232 |
| AsuII | TTCGAA | 1 cut(s) | 831 |
| AvaI | CYCGRG | 2 cut(s) | 2670, 5093 |
| AvaII | GGWCC | 4 cut(s) | 1124, 1795, 4711, 4887 |
| AxyI | CCTNAGG | 1 cut(s) | 117 |
| BaeGI | GKGCMC | 1 cut(s) | 1591 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 168, 201, 1167, 1200, 4741, 4774 |
| BalI | TGGCCA | 1 cut(s) | 3977 |
| BamHI | GGATCC | 3 cut(s) | 1385, 3475, 5656 |
| BanI | GGYRCC | 3 cut(s) | 637, 2122, 5843 |
| BanII | GRGCYC | 3 cut(s) | 131, 788, 5132 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1234, 1266, 4209, 4241 |
| BbsI | GAAGAC | 2 cut(s) | 555, 3609 |
| Bbv12I | GWGCWC | 8 cut(s) | 131, 394, 766, 1591, 4988, 5014, 5748, 5791 |
| BbvCI | CCTCAGC | 1 cut(s) | 3381 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2415, 2449 |
| BciT130I | CCWGG | 7 cut(s) | 1019, 1790, 2868, 3836, 4911, 5367, 6042 |
| BciVI | GTATCC | 1 cut(s) | 169 |
| BclI | TGATCA | 4 cut(s) | 433, 1555, 3529, 4171 |
| BcoDI | GTCTC | 8 cut(s) | 26, 1189, 1343, 1555, 1634, 3759, 5170, 5550 |
| BcuI | ACTAGT | 3 cut(s) | 254, 3056, 5419 |
| BfmI | CTRYAG | 7 cut(s) | 1824, 1842, 1887, 3765, 5293, 5721, 5970 |
| BfoI | RGCGCY | 2 cut(s) | 2126, 4654 |
| BfrI | CTTAAG | 2 cut(s) | 1289, 3734 |
| BfuAI | ACCTGC | 3 cut(s) | 1249, 2779, 5029 |
| BfuI | GTATCC | 1 cut(s) | 169 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1255 |
| BglII | AGATCT | 2 cut(s) | 3535, 5184 |
| BmcAI | AGTACT | 2 cut(s) | 2242, 5279 |
| Bme1390I | CCNGG | 7 cut(s) | 1019, 1790, 2868, 3836, 4911, 5367, 6042 |
| Bme18I | GGWCC | 4 cut(s) | 1124, 1795, 4711, 4887 |
| BmeT110I | CYCGRG | 2 cut(s) | 2670, 5093 |
| BmgT120I | GGNCC | 8 cut(s) | 1124, 1795, 2136, 2253, 4240, 4578, 4711, 4887 |
| BmrFI | CCNGG | 7 cut(s) | 1019, 1790, 2868, 3836, 4911, 5367, 6042 |
| BmrI | ACTGGG | 4 cut(s) | 181, 1565, 2063, 4585 |
| BmuI | ACTGGG | 4 cut(s) | 181, 1565, 2063, 4585 |
| BpiI | GAAGAC | 2 cut(s) | 555, 3609 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4180, 4212 |
| BpmI | CTGGAG | 7 cut(s) | 1014, 1811, 2094, 2622, 4325, 5388, 6101 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3381, 5126 |
| Bpu14I | TTCGAA | 1 cut(s) | 831 |
| BpuEI | CTTGAG | 5 cut(s) | 145, 2054, 3100, 4629, 5173 |
| Bsa29I | ATCGAT | 1 cut(s) | 5667 |
| BsaAI | YACGTR | 2 cut(s) | 1577, 3419 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3534, 4170 |
| BsaHI | GRCGYC | 3 cut(s) | 487, 2123, 2579 |
| BsaI | GGTCTC | 1 cut(s) | 1189 |
| BsaJI | CCNNGG | 6 cut(s) | 449, 668, 940, 2126, 4910, 4992 |
| BsaWI | WCCGGW | 2 cut(s) | 290, 3606 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1533, 1563, 4227, 4257, 6074, 6104 |
| Bse118I | RCCGGY | 1 cut(s) | 3606 |
| Bse21I | CCTNAGG | 1 cut(s) | 117 |
| Bse3DI | GCAATG | 5 cut(s) | 1035, 5027, 5303, 5337, 5784 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3534, 4170 |
| BseBI | CCWGG | 7 cut(s) | 1019, 1790, 2868, 3836, 4911, 5367, 6042 |
| BseCI | ATCGAT | 1 cut(s) | 5667 |
| BseDI | CCNNGG | 6 cut(s) | 449, 668, 940, 2126, 4910, 4992 |
| BseJI | GATNNNNATC | 2 cut(s) | 3534, 4170 |
| BseMI | GCAATG | 5 cut(s) | 1035, 5027, 5303, 5337, 5784 |
| BseRI | GAGGAG | 4 cut(s) | 4239, 4387, 5045, 6098 |
| BseSI | GKGCMC | 1 cut(s) | 1591 |
| BseYI | CCCAGC | 3 cut(s) | 281, 4830, 5701 |
| BsgI | GTGCAG | 3 cut(s) | 2661, 3285, 4089 |
| Bsh1236I | CGCG | 1 cut(s) | 466 |
| BshNI | GGYRCC | 3 cut(s) | 637, 2122, 5843 |
| BshTI | ACCGGT | 1 cut(s) | 3606 |
| BshVI | ATCGAT | 1 cut(s) | 5667 |
| BsiHKAI | GWGCWC | 8 cut(s) | 131, 394, 766, 1591, 4988, 5014, 5748, 5791 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2670, 5093 |
| BsiSI | CCGG | 2 cut(s) | 291, 3607 |
| BslFI | GGGAC | 4 cut(s) | 423, 820, 2390, 4873 |
| BsmAI | GTCTC | 8 cut(s) | 26, 1189, 1343, 1555, 1634, 3759, 5170, 5550 |
| BsmBI | CGTCTC | 1 cut(s) | 26 |
| BsmFI | GGGAC | 4 cut(s) | 423, 820, 2390, 4873 |
| BsmI | GAATGC | 4 cut(s) | 1462, 1882, 4060, 4792 |
| Bso31I | GGTCTC | 1 cut(s) | 1189 |
| BsoBI | CYCGRG | 2 cut(s) | 2670, 5093 |
| Bsp119I | TTCGAA | 1 cut(s) | 831 |
| Bsp1407I | TGTACA | 1 cut(s) | 5134 |
| Bsp19I | CCATGG | 1 cut(s) | 940 |
| BspDI | ATCGAT | 1 cut(s) | 5667 |
| BspFNI | CGCG | 1 cut(s) | 466 |
| BspHI | TCATGA | 1 cut(s) | 1636 |
| BspMAI | CTGCAG | 4 cut(s) | 1828, 3769, 5725, 5974 |
| BspMI | ACCTGC | 3 cut(s) | 1249, 2779, 5029 |
| BspT104I | TTCGAA | 1 cut(s) | 831 |
| BspT107I | GGYRCC | 3 cut(s) | 637, 2122, 5843 |
| BspTI | CTTAAG | 2 cut(s) | 1289, 3734 |
| BspTNI | GGTCTC | 1 cut(s) | 1189 |
| BsrBI | CCGCTC | 1 cut(s) | 194 |
| BsrDI | GCAATG | 5 cut(s) | 1035, 5027, 5303, 5337, 5784 |
| BsrFI | RCCGGY | 1 cut(s) | 3606 |
| BsrGI | TGTACA | 1 cut(s) | 5134 |
| BssAI | RCCGGY | 1 cut(s) | 3606 |
| BssECI | CCNNGG | 6 cut(s) | 449, 668, 940, 2126, 4910, 4992 |
| BssNI | GRCGYC | 3 cut(s) | 487, 2123, 2579 |
| BssT1I | CCWWGG | 4 cut(s) | 449, 668, 940, 4992 |
| Bst2UI | CCWGG | 7 cut(s) | 1019, 1790, 2868, 3836, 4911, 5367, 6042 |
| Bst6I | CTCTTC | 8 cut(s) | 837, 1067, 1980, 4152, 4227, 4665, 5573, 5847 |
| BstACI | GRCGYC | 3 cut(s) | 487, 2123, 2579 |
| BstAFI | CTTAAG | 2 cut(s) | 1289, 3734 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1823, 5044 |
| BstAUI | TGTACA | 1 cut(s) | 5134 |
| BstBAI | YACGTR | 2 cut(s) | 1577, 3419 |
| BstBI | TTCGAA | 1 cut(s) | 831 |
| BstDSI | CCRYGG | 2 cut(s) | 940, 2126 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2143 |
| BstFNI | CGCG | 1 cut(s) | 466 |
| BstH2I | RGCGCY | 2 cut(s) | 2126, 4654 |
| BstHHI | GCGC | 4 cut(s) | 7, 466, 2125, 4653 |
| BstMAI | GTCTC | 8 cut(s) | 26, 1189, 1343, 1555, 1634, 3759, 5170, 5550 |
| BstNI | CCWGG | 7 cut(s) | 1019, 1790, 2868, 3836, 4911, 5367, 6042 |
| BstNSI | RCATGY | 9 cut(s) | 1621, 1779, 2916, 3248, 3471, 3998, 4078, 5174, 5346 |
| BstSCI | CCNGG | 7 cut(s) | 1017, 1788, 2866, 3834, 4909, 5365, 6040 |
| BstSFI | CTRYAG | 7 cut(s) | 1824, 1842, 1887, 3765, 5293, 5721, 5970 |
| BstSLI | GKGCMC | 1 cut(s) | 1591 |
| BstUI | CGCG | 1 cut(s) | 466 |
| BstV2I | GAAGAC | 2 cut(s) | 555, 3609 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2133, 4634, 5494 |
| Bsu15I | ATCGAT | 1 cut(s) | 5667 |
| Bsu36I | CCTNAGG | 1 cut(s) | 117 |
| BsuI | GTATCC | 1 cut(s) | 169 |
| BsuTUI | ATCGAT | 1 cut(s) | 5667 |
| BtgI | CCRYGG | 2 cut(s) | 940, 2126 |
| BtgZI | GCGATG | 1 cut(s) | 4493 |
| BtsI | GCAGTG | 2 cut(s) | 1673, 4958 |
| BveI | ACCTGC | 3 cut(s) | 1249, 2779, 5029 |
| CaiI | CAGNNNCTG | 5 cut(s) | 1768, 1823, 1850, 3820, 5118 |
| CciI | TCATGA | 1 cut(s) | 1636 |
| CfoI | GCGC | 4 cut(s) | 7, 466, 2125, 4653 |
| Cfr10I | RCCGGY | 1 cut(s) | 3606 |
| Cfr13I | GGNCC | 8 cut(s) | 1124, 1795, 2136, 2253, 4240, 4578, 4711, 4887 |
| ClaI | ATCGAT | 1 cut(s) | 5667 |
| CseI | GACGC | 1 cut(s) | 2568 |
| CspAI | ACCGGT | 1 cut(s) | 3606 |
| DinI | GGCGCC | 1 cut(s) | 2124 |
| DraI | TTTAAA | 7 cut(s) | 687, 1866, 2046, 2503, 3222, 4413, 4518 |
| EaeI | YGGCCR | 1 cut(s) | 3975 |
| Eam1104I | CTCTTC | 8 cut(s) | 837, 1067, 1980, 4152, 4227, 4665, 5573, 5847 |
| EarI | CTCTTC | 8 cut(s) | 837, 1067, 1980, 4152, 4227, 4665, 5573, 5847 |
| Ecl136II | GAGCTC | 1 cut(s) | 129 |
| Eco130I | CCWWGG | 4 cut(s) | 449, 668, 940, 4992 |
| Eco147I | AGGCCT | 1 cut(s) | 3424 |
| Eco24I | GRGCYC | 3 cut(s) | 131, 788, 5132 |
| Eco31I | GGTCTC | 1 cut(s) | 1189 |
| Eco32I | GATATC | 2 cut(s) | 288, 4617 |
| Eco47I | GGWCC | 4 cut(s) | 1124, 1795, 4711, 4887 |
| Eco47III | AGCGCT | 1 cut(s) | 4652 |
| Eco53kI | GAGCTC | 1 cut(s) | 129 |
| Eco57I | CTGAAG | 7 cut(s) | 800, 1679, 3195, 3747, 5022, 5258, 5414 |
| Eco81I | CCTNAGG | 1 cut(s) | 117 |
| Eco88I | CYCGRG | 2 cut(s) | 2670, 5093 |
| EcoICRI | GAGCTC | 1 cut(s) | 129 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2143 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1795, 4240 |
| EcoRII | CCWGG | 7 cut(s) | 1017, 1788, 2866, 3834, 4909, 5365, 6040 |
| EcoRV | GATATC | 2 cut(s) | 288, 4617 |
| EcoT14I | CCWWGG | 4 cut(s) | 449, 668, 940, 4992 |
| EcoT22I | ATGCAT | 4 cut(s) | 604, 1623, 3965, 3996 |
| EcoT38I | GRGCYC | 3 cut(s) | 131, 788, 5132 |
| EgeI | GGCGCC | 1 cut(s) | 2124 |
| EheI | GGCGCC | 1 cut(s) | 2124 |
| ErhI | CCWWGG | 4 cut(s) | 449, 668, 940, 4992 |
| Esp3I | CGTCTC | 1 cut(s) | 26 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1373, 1405, 2016, 2048, 2931, 2963 |
| FaqI | GGGAC | 4 cut(s) | 423, 820, 2390, 4873 |
| FauI | CCCGC | 2 cut(s) | 1229, 5757 |
| FauNDI | CATATG | 4 cut(s) | 438, 4123, 4702, 5574 |
| FbaI | TGATCA | 4 cut(s) | 433, 1555, 3529, 4171 |
| FblI | GTMKAC | 2 cut(s) | 1672, 3053 |
| FriOI | GRGCYC | 3 cut(s) | 131, 788, 5132 |
| GlaI | GCGC | 4 cut(s) | 6, 465, 2124, 4652 |
| GsaI | CCCAGC | 3 cut(s) | 285, 4834, 5705 |
| GsuI | CTGGAG | 7 cut(s) | 1014, 1811, 2094, 2622, 4325, 5388, 6101 |
| HaeII | RGCGCY | 2 cut(s) | 2126, 4654 |
| HapII | CCGG | 2 cut(s) | 291, 3607 |
| HgaI | GACGC | 1 cut(s) | 2568 |
| HhaI | GCGC | 4 cut(s) | 7, 466, 2125, 4653 |
| Hin1I | GRCGYC | 3 cut(s) | 487, 2123, 2579 |
| Hin6I | GCGC | 4 cut(s) | 5, 464, 2123, 4651 |
| HinP1I | GCGC | 4 cut(s) | 5, 464, 2123, 4651 |
| HincII | GTYRAC | 2 cut(s) | 1271, 4560 |
| HindII | GTYRAC | 2 cut(s) | 1271, 4560 |
| HindIII | AAGCTT | 8 cut(s) | 358, 3076, 3698, 4343, 4424, 4739, 5882, 6143 |
| HpaII | CCGG | 2 cut(s) | 291, 3607 |
| HphI | GGTGA | 2 cut(s) | 1155, 5232 |
| Hpy166II | GTNNAC | 9 cut(s) | 1035, 1271, 1589, 1673, 3054, 3088, 4560, 5168, 5206 |
| Hpy8I | GTNNAC | 9 cut(s) | 1035, 1271, 1589, 1673, 3054, 3088, 4560, 5168, 5206 |
| Hpy99I | CGWCG | 3 cut(s) | 489, 492, 5064 |
| HpyCH4IV | ACGT | 9 cut(s) | 336, 347, 487, 1576, 2332, 3418, 3844, 4417, 5626 |
| HpySE526I | ACGT | 9 cut(s) | 336, 347, 487, 1576, 2332, 3418, 3844, 4417, 5626 |
| Hsp92I | GRCGYC | 3 cut(s) | 487, 2123, 2579 |
| HspAI | GCGC | 4 cut(s) | 5, 464, 2123, 4651 |
| KasI | GGCGCC | 1 cut(s) | 2122 |
| KpnI | GGTACC | 1 cut(s) | 641 |
| Ksp22I | TGATCA | 4 cut(s) | 433, 1555, 3529, 4171 |
| LmnI | GCTCC | 9 cut(s) | 2191, 2220, 3859, 4004, 4132, 4306, 5009, 5743, 6085 |
| MaeII | ACGT | 9 cut(s) | 336, 347, 487, 1576, 2332, 3418, 3844, 4417, 5626 |
| MbiI | CCGCTC | 1 cut(s) | 194 |
| MfeI | CAATTG | 3 cut(s) | 1110, 2739, 5948 |
| MlsI | TGGCCA | 1 cut(s) | 3977 |
| MluNI | TGGCCA | 1 cut(s) | 3977 |
| Mly113I | GGCGCC | 1 cut(s) | 2123 |
| MmeI | TCCRAC | 4 cut(s) | 2544, 2880, 4237, 4549 |
| Mox20I | TGGCCA | 1 cut(s) | 3977 |
| Mph1103I | ATGCAT | 4 cut(s) | 604, 1623, 3965, 3996 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1488, 5325 |
| MscI | TGGCCA | 1 cut(s) | 3977 |
| Msp20I | TGGCCA | 1 cut(s) | 3977 |
| MspA1I | CMGCKG | 5 cut(s) | 80, 1850, 2510, 2785, 3380 |
| MspCI | CTTAAG | 2 cut(s) | 1289, 3734 |
| MspI | CCGG | 2 cut(s) | 291, 3607 |
| MspR9I | CCNGG | 7 cut(s) | 1019, 1790, 2868, 3836, 4911, 5367, 6042 |
| MunI | CAATTG | 3 cut(s) | 1110, 2739, 5948 |
| Mva1269I | GAATGC | 4 cut(s) | 1462, 1882, 4060, 4792 |
| MvaI | CCWGG | 7 cut(s) | 1019, 1790, 2868, 3836, 4911, 5367, 6042 |
| MvnI | CGCG | 1 cut(s) | 466 |
| NarI | GGCGCC | 1 cut(s) | 2123 |
| NcoI | CCATGG | 1 cut(s) | 940 |
| NdeI | CATATG | 4 cut(s) | 438, 4123, 4702, 5574 |
| NmeAIII | GCCGAG | 3 cut(s) | 64, 1372, 2986 |
| NmuCI | GTSAC | 5 cut(s) | 1279, 1367, 4192, 4363, 5120 |
| NsiI | ATGCAT | 4 cut(s) | 604, 1623, 3965, 3996 |
| NspI | RCATGY | 9 cut(s) | 1621, 1779, 2916, 3248, 3471, 3998, 4078, 5174, 5346 |
| NspV | TTCGAA | 1 cut(s) | 831 |
| OliI | CACNNNNGTG | 1 cut(s) | 2131 |
| PacI | TTAATTAA | 1 cut(s) | 3447 |
| PaeI | GCATGC | 3 cut(s) | 2916, 4078, 5346 |
| PagI | TCATGA | 1 cut(s) | 1636 |
| PceI | AGGCCT | 1 cut(s) | 3424 |
| PciI | ACATGT | 1 cut(s) | 5170 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 5745 |
| PctI | GAATGC | 4 cut(s) | 1462, 1882, 4060, 4792 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1488, 5325 |
| PflFI | GACNNNGTC | 1 cut(s) | 663 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 622, 6136 |
| PinAI | ACCGGT | 1 cut(s) | 3606 |
| PluTI | GGCGCC | 1 cut(s) | 2126 |
| Ppu21I | YACGTR | 2 cut(s) | 1577, 3419 |
| PpuMI | RGGWCCY | 1 cut(s) | 1795 |
| PscI | ACATGT | 1 cut(s) | 5170 |
| PshBI | ATTAAT | 3 cut(s) | 585, 3099, 5907 |
| Psp124BI | GAGCTC | 1 cut(s) | 131 |
| Psp1406I | AACGTT | 4 cut(s) | 336, 2332, 4417, 5626 |
| Psp5II | RGGWCCY | 1 cut(s) | 1795 |
| Psp6I | CCWGG | 7 cut(s) | 1017, 1788, 2866, 3834, 4909, 5365, 6040 |
| PspFI | CCCAGC | 3 cut(s) | 281, 4830, 5701 |
| PspGI | CCWGG | 7 cut(s) | 1017, 1788, 2866, 3834, 4909, 5365, 6040 |
| PspPI | GGNCC | 8 cut(s) | 1124, 1795, 2136, 2253, 4240, 4578, 4711, 4887 |
| PspPPI | RGGWCCY | 1 cut(s) | 1795 |
| PstI | CTGCAG | 4 cut(s) | 1828, 3769, 5725, 5974 |
| PstNI | CAGNNNCTG | 5 cut(s) | 1768, 1823, 1850, 3820, 5118 |
| PsyI | GACNNNGTC | 1 cut(s) | 663 |
| PvuII | CAGCTG | 4 cut(s) | 80, 1850, 2510, 3380 |
| SacI | GAGCTC | 1 cut(s) | 131 |
| Sau96I | GGNCC | 8 cut(s) | 1124, 1795, 2136, 2253, 4240, 4578, 4711, 4887 |
| ScaI | AGTACT | 2 cut(s) | 2242, 5279 |
| ScrFI | CCNGG | 7 cut(s) | 1019, 1790, 2868, 3836, 4911, 5367, 6042 |
| SfcI | CTRYAG | 7 cut(s) | 1824, 1842, 1887, 3765, 5293, 5721, 5970 |
| SfoI | GGCGCC | 1 cut(s) | 2124 |
| SfuI | TTCGAA | 1 cut(s) | 831 |
| SinI | GGWCC | 4 cut(s) | 1124, 1795, 4711, 4887 |
| SmiI | ATTTAAAT | 1 cut(s) | 2046 |
| SmlI | CTYRAG | 7 cut(s) | 124, 1289, 2033, 3079, 3734, 4644, 5188 |
| SmoI | CTYRAG | 7 cut(s) | 124, 1289, 2033, 3079, 3734, 4644, 5188 |
| SpeI | ACTAGT | 3 cut(s) | 254, 3056, 5419 |
| SphI | GCATGC | 3 cut(s) | 2916, 4078, 5346 |
| SseBI | AGGCCT | 1 cut(s) | 3424 |
| SspDI | GGCGCC | 1 cut(s) | 2122 |
| SstI | GAGCTC | 1 cut(s) | 131 |
| StuI | AGGCCT | 1 cut(s) | 3424 |
| StyD4I | CCNGG | 7 cut(s) | 1017, 1788, 2866, 3834, 4909, 5365, 6040 |
| StyI | CCWWGG | 4 cut(s) | 449, 668, 940, 4992 |
| SwaI | ATTTAAAT | 1 cut(s) | 2046 |
| TaiI | ACGT | 9 cut(s) | 339, 350, 490, 1579, 2335, 3421, 3847, 4420, 5629 |
| TaqII | GACCGA | 1 cut(s) | 1141 |
| TatI | WGTACW | 5 cut(s) | 2240, 4283, 4596, 5134, 5277 |
| TauI | GCSGC | 4 cut(s) | 194, 1327, 2788, 5599 |
| TseFI | GTSAC | 5 cut(s) | 1279, 1367, 4192, 4363, 5120 |
| Tsp45I | GTSAC | 5 cut(s) | 1279, 1367, 4192, 4363, 5120 |
| TspGWI | ACGGA | 3 cut(s) | 2156, 4545, 5048 |
| Tth111I | GACNNNGTC | 1 cut(s) | 663 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 622, 6136 |
| Vha464I | CTTAAG | 2 cut(s) | 1289, 3734 |
| VneI | GTGCAC | 1 cut(s) | 1587 |
| VpaK11BI | GGWCC | 4 cut(s) | 1124, 1795, 4711, 4887 |
| VspI | ATTAAT | 3 cut(s) | 585, 3099, 5907 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2143 |
| XapI | RAATTY | 8 cut(s) | 818, 966, 1484, 2296, 2322, 4298, 4434, 6017 |
| XbaI | TCTAGA | 1 cut(s) | 3956 |
| XceI | RCATGY | 9 cut(s) | 1621, 1779, 2916, 3248, 3471, 3998, 4078, 5174, 5346 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4946 |
| XmiI | GTMKAC | 2 cut(s) | 1672, 3053 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1488, 5325 |
| ZraI | GACGTC | 1 cut(s) | 488 |
| ZrmI | AGTACT | 2 cut(s) | 2242, 5279 |
| Zsp2I | ATGCAT | 4 cut(s) | 604, 1623, 3965, 3996 |