Rorug05G0489700

TATA-binding protein-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007901
Physical Location & Seq
Reverse (-)
67342031 .. 67343463
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0489700.1

Sequence Viewer

Length: 1317 bp
ATGGCGGCAAAGGTTTCGAATTTCTCGGATTTGGTTCAGAGGGTGGCCGCTTCTTGCTTGCTGCACCCACTTGGCGCCGGCAGGAACGGTGACTTCGCCGTGAATGGCGCGGGAGATGAGGATGATTTCAGTGAGCTCGAATTGGATGAGCCGGAGGAGGAAGTGAGAGAAGAGGAGGAGATTGGTGGTGGAGGAGGGTTTAGGGTTAGGGAGGAGAGGTCAAGGAAGGAGGTAATGGAGATGGAGATGGCAATGTGGGAAGTGTTTGACGCCGTTTCGGCAATGAAGAAGGCCTACGCTGGCCTGCAGAAGGCACATAGCCCTTGGGACCCGGAGAAGATAAGGGTGGCCGACATAGAGCGGTGGCGGGGGGCGACCGTGGAGGAGCTGAAGAAGGAGGTGAAGGCTAAGGAAGTAGAGGTTGATAACCTCAAGGAAAAGCTCAGTAGTGTAGTTAATGGCTCCAACGGGAATAATGGCAAGAAGGGCAGATCTATCTCAAGGAGGAAGGTAGGTTGCAGTCAACTTCAAGTTGTAGCTGCTCCTGCACCGGATCTGTTTGAGGCAACAATGAGCCAAGTGAAAGAGGCATCAAAGTCCTTCACTTTATTGCTCCTCTCTCTCATGCGTGCCGCTCATTGGGACATTGCCGCAGCTGTGCGTTCCATTGAAGCTGCCACTGTGACTGCCATTACCACAACAGCTATTAACACATCCTCCATTCTCACAACGACCCAGAATGGTAGTGCCAAGTATGCTCTCCAGTCCTACATTTCCAGCAAAATGTTCCAAGGCTTTGATCACGAGACATTCTACATGGACGGTAGCCTCTCCTCGCTTCTCAACCCAGATCAGTACCGCCGTGATTGCTTCACTCAATACCGTGACATGAAGGCCATGGATCCTGCCGAGCTTCTTGGAATATTGCCCACGTGTCACTTTGGCAAGTTCTGCTCAAACAAGTACTTGGCCATAGTTCATCCCAAGATGGAAGAGTCATTGTTTGGAGACTTGGATCAGCGACGCCAGGTCTTAGATGGAAACCACCCCAGGAGTGAGTTTTACAGTCAGTTCTTGGGGATGGCCAAAGCAGTCTGGTTACTGCACTTGCTGGCCTTCTCTCTTGACCCAACACCTAGTCAATTTGAGGCTACTAGAGGTGCTGAGTTTCATCCACACTACATGAAAAGTGTTGTCAAGTTTTCGGGTGGGCGGGTTCCTTCGGGTCAGGTTGTCGGGTTTCCTGTAAGTCCTGGGTTCAAGCTTGGAAATGGGTCTATTATCAAGGCCAGAGTTTACCTAGTTTCCAGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0048509 GO:0048518 GO:0050789 GO:0050793 GO:0051094 GO:0065007 GO:1902183 GO:1902185
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3535 HEAT HEAT_EZ Helicase_C SNF2_N

Protein Analysis

438

Amino Acids

48.46

Weight (kDa)

6.12

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 77 - 118 2.3e-14 Plant protein of unknown function (DUF641)
GIL1_IRKI_C PF24994 382 - 433 1.5e-09 GIL1/IRKI C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccBSI CCGCTC 2 cut(s) 361, 635
AccII CGCG 1 cut(s) 110
AciI CCGC 9 cut(s) 5, 48, 110, 361, 367, 633, 651, 859, 1213
AclWI GGATC 4 cut(s) 561, 896, 909, 1023
AcoI YGGCCR 4 cut(s) 45, 348, 969, 1083
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 410
AcvI CACGTG 1 cut(s) 933
AcyI GRCGYC 3 cut(s) 75, 270, 1024
AfaI GTAC 2 cut(s) 857, 965
AfiI CCNNNNNNNGG 2 cut(s) 310, 639
AflIII ACRYGT 1 cut(s) 932
AgsI TTSAA 3 cut(s) 530, 671, 1261
AhdI GACNNNNNGTC 1 cut(s) 1028
AjnI CCWGG 4 cut(s) 1026, 1049, 1252, 1307
AluBI AGCT 9 cut(s) 136, 388, 442, 539, 656, 674, 704, 913, 1264
AluI AGCT 9 cut(s) 136, 388, 442, 539, 656, 674, 704, 913, 1264
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 2 cut(s) 800, 1002
AlwI GGATC 4 cut(s) 561, 896, 909, 1023
AoxI GGCC 9 cut(s) 45, 291, 301, 348, 894, 969, 1083, 1113, 1287
ApeKI GCWGC 4 cut(s) 61, 539, 653, 674
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 2 cut(s) 77, 110
AspS9I GGNCC 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 101, 412
AsuII TTCGAA 1 cut(s) 17
AvaII GGWCC 1 cut(s) 328
BalI TGGCCA 2 cut(s) 971, 1085
BamHI GGATCC 1 cut(s) 901
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 138
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BauI CACGAG 1 cut(s) 803
BbrPI CACGTG 1 cut(s) 933
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 4 cut(s) 48, 526, 661, 665
BccI CCATC 5 cut(s) 235, 241, 982, 1031, 1075
BceAI ACGGC 3 cut(s) 83, 257, 846
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 4 cut(s) 1028, 1051, 1254, 1309
BclI TGATCA 1 cut(s) 799
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 2 cut(s) 800, 1002
BfaI CTAG 3 cut(s) 1137, 1155, 1301
BfmI CTRYAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 78
BglI GCCNNNNNGGC 1 cut(s) 278
BglII AGATCT 1 cut(s) 491
BisI GCNGC 8 cut(s) 6, 48, 62, 540, 633, 651, 654, 675
BlsI GCNGC 8 cut(s) 7, 49, 63, 541, 634, 652, 655, 676
BmcAI AGTACT 1 cut(s) 965
Bme1390I CCNGG 5 cut(s) 332, 1028, 1051, 1254, 1309
Bme18I GGWCC 1 cut(s) 328
BmeRI GACNNNNNGTC 1 cut(s) 1028
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 6 cut(s) 76, 329, 330, 463, 903, 1218
BmrFI CCNGG 5 cut(s) 332, 1028, 1051, 1254, 1309
BmsI GCATC 1 cut(s) 599
BpmI CTGGAG 1 cut(s) 746
Bpu10I CCTNAGC 1 cut(s) 408
Bpu14I TTCGAA 1 cut(s) 17
BpuEI CTTGAG 2 cut(s) 416, 484
BpuMI CCSGG 1 cut(s) 332
BsaAI YACGTR 1 cut(s) 933
BsaHI GRCGYC 3 cut(s) 75, 270, 1024
BsaJI CCNNGG 7 cut(s) 323, 378, 790, 897, 1049, 1253, 1308
BsaWI WCCGGW 1 cut(s) 550
BsaXI ACNNNNNCTCC 4 cut(s) 203, 233, 701, 731
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 639
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 763
Bse3DI GCAATG 3 cut(s) 258, 288, 645
BseBI CCWGG 4 cut(s) 1028, 1051, 1254, 1309
BseDI CCNNGG 7 cut(s) 323, 378, 790, 897, 1049, 1253, 1308
BseGI GGATG 6 cut(s) 127, 151, 713, 979, 1086, 1171
BseLI CCNNNNNNNGG 2 cut(s) 310, 639
BseMI GCAATG 3 cut(s) 258, 288, 645
BseMII CTCAG 2 cut(s) 457, 1155
BseNI ACTGG 1 cut(s) 763
BseRI GAGGAG 8 cut(s) 170, 188, 191, 207, 227, 398, 605, 823
BseXI GCAGC 4 cut(s) 48, 526, 661, 665
BsgI GTGCAG 3 cut(s) 47, 531, 1088
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 9 cut(s) 47, 293, 303, 350, 896, 971, 1085, 1115, 1289
BshNI GGYRCC 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 4 cut(s) 78, 152, 332, 551
BslFI GGGAC 2 cut(s) 341, 656
BslI CCNNNNNNNGG 2 cut(s) 310, 639
BsmAI GTCTC 2 cut(s) 800, 1002
BsmFI GGGAC 2 cut(s) 341, 656
BsnI GGCC 9 cut(s) 47, 293, 303, 350, 896, 971, 1085, 1115, 1289
Bsp119I TTCGAA 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 6 cut(s) 491, 553, 799, 850, 901, 1015
Bsp19I CCATGG 1 cut(s) 897
BspACI CCGC 9 cut(s) 5, 48, 110, 361, 367, 633, 651, 859, 1213
BspANI GGCC 9 cut(s) 47, 293, 303, 350, 896, 971, 1085, 1115, 1289
BspCNI CTCAG 2 cut(s) 456, 1156
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 6 cut(s) 76, 329, 330, 463, 903, 1218
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 4 cut(s) 561, 896, 909, 1023
BspT104I TTCGAA 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 74
BsrBI CCGCTC 2 cut(s) 361, 635
BsrDI GCAATG 3 cut(s) 258, 288, 645
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 763
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 7 cut(s) 323, 378, 790, 897, 1049, 1253, 1308
BssMI GATC 6 cut(s) 491, 553, 799, 850, 901, 1015
BssNI GRCGYC 3 cut(s) 75, 270, 1024
BssSI CACGAG 1 cut(s) 803
BssT1I CCWWGG 3 cut(s) 323, 790, 897
Bst2BI CACGAG 1 cut(s) 803
Bst2UI CCWGG 4 cut(s) 1028, 1051, 1254, 1309
Bst4CI ACNGT 6 cut(s) 89, 379, 682, 824, 884, 1067
Bst6I CTCTTC 2 cut(s) 165, 987
BstACI GRCGYC 3 cut(s) 75, 270, 1024
BstAPI GCANNNNNTGC 1 cut(s) 951
BstBAI YACGTR 1 cut(s) 933
BstBI TTCGAA 1 cut(s) 17
BstC8I GCNNGC 6 cut(s) 59, 79, 301, 305, 630, 1113
BstDEI CTNAG 4 cut(s) 408, 443, 1033, 1164
BstDSI CCRYGG 2 cut(s) 378, 897
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 6 cut(s) 127, 151, 713, 979, 1086, 1171
BstFNI CGCG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 77, 110
BstKTI GATC 6 cut(s) 494, 556, 802, 853, 904, 1018
BstMAI GTCTC 2 cut(s) 800, 1002
BstMBI GATC 6 cut(s) 491, 553, 799, 850, 901, 1015
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 6 cut(s) 278, 486, 545, 755, 867, 951
BstNI CCWGG 4 cut(s) 1028, 1051, 1254, 1309
BstSCI CCNGG 5 cut(s) 330, 1026, 1049, 1252, 1307
BstSFI CTRYAG 1 cut(s) 305
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 4 cut(s) 48, 526, 661, 665
BstX2I RGATCY 3 cut(s) 491, 553, 901
BstYI RGATCY 3 cut(s) 491, 553, 901
BsuRI GGCC 9 cut(s) 47, 293, 303, 350, 896, 971, 1085, 1115, 1289
BtgI CCRYGG 2 cut(s) 378, 897
BtsCI GGATG 6 cut(s) 127, 151, 713, 979, 1086, 1171
BtsIMutI CAGTG 2 cut(s) 136, 678
Cac8I GCNNGC 6 cut(s) 59, 79, 301, 305, 630, 1113
CfoI GCGC 2 cut(s) 77, 110
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 328
CseI GACGC 2 cut(s) 278, 1032
Csp6I GTAC 2 cut(s) 856, 964
CviAII CATG 5 cut(s) 625, 817, 889, 898, 1183
CviQI GTAC 2 cut(s) 856, 964
DdeI CTNAG 4 cut(s) 408, 443, 1033, 1164
DinI GGCGCC 1 cut(s) 76
DpnI GATC 6 cut(s) 493, 555, 801, 852, 903, 1017
DpnII GATC 6 cut(s) 491, 553, 799, 850, 901, 1015
DriI GACNNNNNGTC 1 cut(s) 1028
EaeI YGGCCR 4 cut(s) 45, 348, 969, 1083
Eam1104I CTCTTC 2 cut(s) 165, 987
Eam1105I GACNNNNNGTC 1 cut(s) 1028
EarI CTCTTC 2 cut(s) 165, 987
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 3 cut(s) 323, 790, 897
Eco147I AGGCCT 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 410
Eco72I CACGTG 1 cut(s) 933
EcoICRI GAGCTC 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 4 cut(s) 1026, 1049, 1252, 1307
EcoT14I CCWWGG 3 cut(s) 323, 790, 897
EcoT38I GRGCYC 1 cut(s) 138
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
ErhI CCWWGG 3 cut(s) 323, 790, 897
FaeI CATG 5 cut(s) 628, 820, 892, 901, 1186
FaiI YATR 9 cut(s) 318, 356, 626, 756, 818, 890, 899, 974, 1184
FaqI GGGAC 2 cut(s) 341, 656
FatI CATG 5 cut(s) 624, 816, 888, 897, 1182
FauI CCCGC 3 cut(s) 103, 360, 1206
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 8 cut(s) 6, 48, 62, 540, 633, 651, 654, 675
FokI GGATG 6 cut(s) 134, 158, 700, 966, 1093, 1158
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 8 cut(s) 6, 48, 62, 540, 633, 651, 654, 675
FspBI CTAG 3 cut(s) 1137, 1155, 1301
GlaI GCGC 2 cut(s) 76, 109
GluI GCNGC 8 cut(s) 6, 48, 62, 540, 633, 651, 654, 675
GsuI CTGGAG 1 cut(s) 746
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 9 cut(s) 47, 293, 303, 350, 896, 971, 1085, 1115, 1289
HapII CCGG 4 cut(s) 78, 152, 332, 551
HgaI GACGC 2 cut(s) 278, 1032
HhaI GCGC 2 cut(s) 77, 110
Hin1I GRCGYC 3 cut(s) 75, 270, 1024
Hin1II CATG 5 cut(s) 628, 820, 892, 901, 1186
Hin6I GCGC 2 cut(s) 75, 108
HinP1I GCGC 2 cut(s) 75, 108
HincII GTYRAC 1 cut(s) 524
HindII GTYRAC 1 cut(s) 524
HindIII AAGCTT 1 cut(s) 1262
HinfI GANTC 1 cut(s) 995
HpaII CCGG 4 cut(s) 78, 152, 332, 551
HphI GGTGA 2 cut(s) 101, 412
Hpy166II GTNNAC 2 cut(s) 524, 1297
Hpy188I TCNGA 2 cut(s) 28, 39
Hpy188III TCNNGA 2 cut(s) 803, 1124
Hpy8I GTNNAC 2 cut(s) 524, 1297
Hpy99I CGWCG 1 cut(s) 1026
HpyCH4III ACNGT 6 cut(s) 89, 379, 682, 824, 884, 1067
HpyCH4IV ACGT 1 cut(s) 932
HpyCH4V TGCA 5 cut(s) 64, 307, 519, 548, 1105
HpyF10VI GCNNNNNNNGC 6 cut(s) 278, 486, 545, 755, 867, 951
HpyF3I CTNAG 4 cut(s) 408, 443, 1033, 1164
HpySE526I ACGT 1 cut(s) 932
Hsp92I GRCGYC 3 cut(s) 75, 270, 1024
Hsp92II CATG 5 cut(s) 628, 820, 892, 901, 1186
HspAI GCGC 2 cut(s) 75, 108
KasI GGCGCC 1 cut(s) 74
KflI GGGWCCC 1 cut(s) 328
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 6 cut(s) 491, 553, 799, 850, 901, 1015
LmnI GCTCC 4 cut(s) 385, 467, 547, 618
Lsp1109I GCAGC 4 cut(s) 48, 526, 661, 665
LweI GCATC 1 cut(s) 599
MaeI CTAG 3 cut(s) 1137, 1155, 1301
MaeII ACGT 1 cut(s) 932
MaeIII GTNAC 5 cut(s) 89, 682, 884, 935, 1098
MalI GATC 6 cut(s) 493, 555, 801, 852, 903, 1017
MbiI CCGCTC 2 cut(s) 361, 635
MboI GATC 6 cut(s) 491, 553, 799, 850, 901, 1015
MboII GAAGA 5 cut(s) 182, 298, 349, 403, 1004
MflI RGATCY 3 cut(s) 491, 553, 901
MhlI GDGCHC 1 cut(s) 138
MlsI TGGCCA 2 cut(s) 971, 1085
MluCI AATT 3 cut(s) 19, 140, 1142
MluNI TGGCCA 2 cut(s) 971, 1085
Mly113I GGCGCC 1 cut(s) 75
MlyI GAGTC 1 cut(s) 1004
MmeI TCCRAC 1 cut(s) 489
Mox20I TGGCCA 2 cut(s) 971, 1085
MroNI GCCGGC 1 cut(s) 77
MscI TGGCCA 2 cut(s) 971, 1085
MseI TTAA 2 cut(s) 456, 708
Msp20I TGGCCA 2 cut(s) 971, 1085
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 4 cut(s) 78, 152, 332, 551
MspR9I CCNGG 5 cut(s) 332, 1028, 1051, 1254, 1309
MvaI CCWGG 4 cut(s) 1028, 1051, 1254, 1309
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 6 cut(s) 278, 486, 545, 755, 867, 951
NaeI GCCGGC 1 cut(s) 79
NarI GGCGCC 1 cut(s) 75
NciI CCSGG 1 cut(s) 332
NcoI CCATGG 1 cut(s) 897
NdeII GATC 6 cut(s) 491, 553, 799, 850, 901, 1015
NgoMIV GCCGGC 1 cut(s) 77
NlaIII CATG 5 cut(s) 628, 820, 892, 901, 1186
NlaIV GGNNCC 6 cut(s) 76, 329, 330, 463, 903, 1218
NmeAIII GCCGAG 1 cut(s) 934
NmuCI GTSAC 4 cut(s) 89, 682, 884, 935
NspV TTCGAA 1 cut(s) 17
PceI AGGCCT 1 cut(s) 293
PdiI GCCGGC 1 cut(s) 79
PkrI GCNGC 8 cut(s) 7, 49, 63, 541, 634, 652, 655, 676
PleI GAGTC 1 cut(s) 1003
PluTI GGCGCC 1 cut(s) 78
PmaCI CACGTG 1 cut(s) 933
PmlI CACGTG 1 cut(s) 933
PpsI GAGTC 1 cut(s) 1003
Ppu21I YACGTR 1 cut(s) 933
PpuMI RGGWCCY 1 cut(s) 328
Psp124BI GAGCTC 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 4 cut(s) 1026, 1049, 1252, 1307
PspCI CACGTG 1 cut(s) 933
PspGI CCWGG 4 cut(s) 1026, 1049, 1252, 1307
PspN4I GGNNCC 6 cut(s) 76, 329, 330, 463, 903, 1218
PspPI GGNCC 1 cut(s) 328
PspPPI RGGWCCY 1 cut(s) 328
PstI CTGCAG 1 cut(s) 309
PsuI RGATCY 3 cut(s) 491, 553, 901
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 2 cut(s) 857, 965
RsaNI GTAC 2 cut(s) 856, 964
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 456, 708
SatI GCNGC 8 cut(s) 6, 48, 62, 540, 633, 651, 654, 675
Sau3AI GATC 6 cut(s) 491, 553, 799, 850, 901, 1015
Sau96I GGNCC 1 cut(s) 328
ScaI AGTACT 1 cut(s) 965
SchI GAGTC 1 cut(s) 1004
ScrFI CCNGG 5 cut(s) 332, 1028, 1051, 1254, 1309
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 1 cut(s) 599
SfcI CTRYAG 1 cut(s) 305
SfoI GGCGCC 1 cut(s) 76
SfuI TTCGAA 1 cut(s) 17
SinI GGWCC 1 cut(s) 328
SmlI CTYRAG 2 cut(s) 431, 499
SmoI CTYRAG 2 cut(s) 431, 499
Sse9I AATT 3 cut(s) 19, 140, 1142
SseBI AGGCCT 1 cut(s) 293
SsiI CCGC 9 cut(s) 5, 48, 110, 361, 367, 633, 651, 859, 1213
SspDI GGCGCC 1 cut(s) 74
SspI AATATT 1 cut(s) 924
SspMI CTAG 3 cut(s) 1137, 1155, 1301
SstI GAGCTC 1 cut(s) 138
StuI AGGCCT 1 cut(s) 293
StyD4I CCNGG 5 cut(s) 330, 1026, 1049, 1252, 1307
StyI CCWWGG 3 cut(s) 323, 790, 897
TaaI ACNGT 6 cut(s) 89, 379, 682, 824, 884, 1067
TaiI ACGT 1 cut(s) 935
TaqI TCGA 2 cut(s) 17, 138
TasI AATT 3 cut(s) 19, 140, 1142
TatI WGTACW 1 cut(s) 963
TauI GCSGC 4 cut(s) 8, 50, 635, 653
Tru1I TTAA 2 cut(s) 456, 708
Tru9I TTAA 2 cut(s) 456, 708
TscAI CASTG 2 cut(s) 136, 685
TseFI GTSAC 4 cut(s) 89, 682, 884, 935
TseI GCWGC 4 cut(s) 61, 539, 653, 674
Tsp45I GTSAC 4 cut(s) 89, 682, 884, 935
TspDTI ATGAA 5 cut(s) 299, 905, 968, 1160, 1199
TspRI CASTG 2 cut(s) 136, 685
VpaK11BI GGWCC 1 cut(s) 328
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 1034
XspI CTAG 3 cut(s) 1137, 1155, 1301
ZrmI AGTACT 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.