Rorug05G0489600

TATA-binding protein-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007901
Physical Location & Seq
Reverse (-)
67310202 .. 67320997
10796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0489600.1

Sequence Viewer

Length: 3480 bp
ATGGTGAACACCCACCGGGATCAGAACCTGGAAAAAGTGAAATTAGAAGTTGACCCACAGTTTCTCTACTTCCATGTAAAACCAATGGGCTCCAGGAAGCAAACAGAATTGTCTCTACGATCAGAAATGGTCAAGCCGAGGACAAAAGGCGGAATGGCCTCCTCCGGCAGGAACAGAAGTTCCTGGGTCGACCTAGCCGATTATCACCGCACAAGGGACCAGGAAGCATACAAGACTCACGATGAAGATGAAGAAGAGGAGGAGGAGGAGATGGGAATGGAGTTCGTAATTATGACAGAAGTGTTCAACGCCGTTTCAGCCATGACAATTGCATACGTGAGCCTACAAGAGGCCCACAACCCGTGGGACCCGGAGAAGCTGAGGGCGGCCGACGTGGCGGTGGTTGGGGAGCTGAGAAGGCTGGGAGACTTAAGAGAGAGGTACTTGAGGAGAAGATGTTACGGCGGAGGTAGTGGTGATATGCTGAGGGAGGCGGTGGTGCCGTACGAGGCGGCAATCGAGGAGCTGAAGAAAGAGGTGAAGGCTAGAGATATGGAGGTTGACAATCTGAAAGAGAAGCTCAAGAGCATTATTGGAGAGGCCAATAGCGGGAAGAAGAGCAGCTGGAAGTCTCTGTCTAGGAGAAAGGTCCATTGCATTACTCAAGTTTCAAAAGCTCCTGCCCCAGAATTGTTCGAGGGGGCAATAAGCGGAGTTAGAGAGGCATCAGACACCTTCACTATAGTTCTCCTCTCTCTCATGCGTGCGGCTCACTGGGATATCGCTGCGGCCGTACGCTCCATTGAAGCCGCCACAGCCACAGCTACGAGGATCAGCGCTTCCTCTGTAATCCAAACTCAACGTGCCAACGCCAAGTTCGCTCTTCAGTCCTACATTTCCCGAAAAGTCTTTCAAGGCTTCGACCACGAGAGCTTCTACATGGATAACAGCCTCTCCTCAGTTCTCAGCCCAGACCAGTATCGCCGGGACTGCTTCGCCGAATATTGTGACATAAAAAGCATGGACTCCACAGAGCTTCTCAATATCCAGCCCTCGTGTAACTTTGGCAAGTTTTGCTCCAACAAGTACTTGGCTATTGTTCATCCCAAGATGGAGGAGTCATTCTTCGGAGACTTGGAGCAGAGACAACAAGTTGTAGAAGGCAGGAACCCTAGGAGTCAGTTTTACAGGCAGTTCTTGGAGTTGGCTAAGGCGATGTGGTTGCTTCACTTGTTGGCGTTCTCGCTTGACCCTGCACCAAGTCAGTTTGAGGCTAGCAGAGGAGCTGATTTTCATCCAGACTACATGGAGAGTGTTCTCAAGTCTCCAGGACAAGTTCCTTCGGCTCAAGTTGTTGGGTTTCCCTTAATTCCAGGGTTCAAGCTTGGCAATGGGTCGATTATTAAGGCCAGAGTTTACCTTGGCTTCAAAGCTGCAAAAGATACATTCAAGAAAAAGAATAGTCCTGCCACCGGCGGCGGTGGTGGTGGATCACGTGCTCCAGCTTCTGCTTCAGCTTCTCACGATGGGGCTCGAGGTCAAAAACGTGAAACTTCACATTCAGGAATACAGAAGCAATCGGGTGCCCAAAACTCAGGGAATTTATCCAGAACTGGTGGAGCAAATCAAAACAACGGCAATGGCATGAACAATTGGGGTTTAAGAAGATCAGATGCTTCTTCGTGGTCAGCTGATAGCATGTCGGGAATTGACCTCACAAGTAGTTCTGAGAAAAGTCAGATTCGTGTTTTCTGTGACAAAGCATTTTCAAGGCTGAAGGGATCCGACAGGAATTTACCTCAGGTTGTCAGAGTTCAAAACCTTCTCCATAGAGGGATTGGTGTCCATCATGCAGGACTTCTTCCAATTGTTAAGGAAGTTGTTGAAATGCTCTTTTGTCGAGGTGTGATAAAGGTTCTGTTTTCAACAGAGACATTTGCAATGGGAGTGAATGCACCAGCTAGAACGGTTGTCTTTGATACATTAAGGAAATTTGATGGCAAGGAATTTAGACAACTGCTACCAGGAGAATACACTCAAATGGCAGGCCGTGCTGGCAGGAGAGGACTTGATAAAATTGGTACAGTTATTGTAATGTGCCGTGATGAAATCCTAGAAGAGAGGGATTTGAAGCATGTCATAGTTGGAAGTGCAACCAGGCTAGAATCTCAGTTTCGGCTTACTTATATTATGATCATGCATCTTCTTCGTGTTGAAGAACTGAAGGTGGAGGACATGCTGAAAAGAAGTTTTGCTGAGTTCCATGCTCAGAAGAAACTACCAGATATGCAGCAACTTCTGATGCGAAAGCTTGCTCAGCCTACAAAAAGTATCGAATGTATAAAAGGGGAACCAGCTATTGAGGAGTATTATGACATGTACTTAGAAAAGGAGAAGCATAGAACAGAAGTATTGGAGGCAGTAATGCAGTCCCCTGGTGCCCAACAATTTCTTACATCCGGAAGAGTGGTTGTCATGAAATCACAATCACAGGCCCAGAAATACTTGCTTGGAGTTGTTGTAAAAGCACCTTCTTCTAGTAATAAGCAACACATCGTTCTAGTGCTGAAACCTGAACTACCAGTGACAATCCAAACTCCCCTGGCTAGTGGTAACTTACAAGATACCAAAAACACTGATTCTTCTCAGGGTTACTACGTGGTAGCGAAATCTAAACGTGCTTTTGAAGAAGAGTATTGTACCTCTGTTTCTTCACGCAAAGGATCAGGTGTCATCAACATAAAATTACCACACCATGGTGCTGCTGCTGGGGTGAGATACGAGGTGGTAAGCAAGCACAGAAGAGAAACAAAAAAGAGGAAAAGAAATTCCACTCTCTCCCGTTCTCACGTCCGAAAACAACCCAAAGAACAGAGCAAATTTCTCCAAGATTTTTCTCGCTCCACAGGCCATCGATCGACCCCAGACCACGTCCCACGCCTTCGCCTCCTCCTTGCGCAGCTGCCAGTGGTAGCCTTTGGCTGTCTCTTGAGCCGTACACGGCGGTGGAGCACGAGGCCGGTTTACCCCCGTTTTGATTTCAAGCTTGATATCTCAAGCTACCAGTCACCACTCCTCACCAAACTCCATCCACAAGCTCGCCTCAACGTCCTGAAGCTCCCAGAAGTGGCCTTGCACGGCGGCGCTACTCGTGGTGGCGGCTGGAAGCCAGACCCGATCAAATCGAAAACCGAAGCTTCGAGCAATATATCTCGCGCTACAGGACACTTCGTGCTAGTTATGAAAGTTGTCAAGCATGATGAGAGAAAGAAGAGCAGCCCGGCCCCGACACCATTGGTGGTGGTCGGCGGCGGCTCTGCCACTAACTCCGGCGGCCCTTTCCGGCCACCTCCGGGGATCAAAAATATGGTTTCTATCGGACCGTCCGATGGACTTGTAGTTTTGATATGTGATCTTATGACTGTCCCAGTGGCTTTGTGTGGTCATGGGCGAAGATCCGACCGTTGGATCTTCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0048509 GO:0048518 GO:0050789 GO:0050793 GO:0051094 GO:0065007 GO:1902183 GO:1902185
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3535 HEAT HEAT_EZ Helicase_C SNF2_N

Protein Analysis

1159

Amino Acids

129.13

Weight (kDa)

9.61

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 96 - 204 1.1e-29 Plant protein of unknown function (DUF641)
GIL1_IRKI_C PF24994 423 - 473 3.5e-08 GIL1/IRKI C-terminal domain
Helicase_C PF00271 576 - 689 4.8e-06 Helicase conserved C-terminal domain
MTR4-like_stalk PF21408 744 - 808 1.4e-12 Exosome RNA helicase MTR4-like, stalk
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2958
AccB1I GGYRCC 3 cut(s) 499, 1583, 2438
AccB7I CCANNNNNTGG 1 cut(s) 2756
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 3216
AccIII TCCGGA 1 cut(s) 2459
AclWI GGATC 9 cut(s) 27, 839, 1498, 1776, 1789, 2731, 3365, 3450, 3476
AcoI YGGCCR 3 cut(s) 387, 789, 3344
AcsI RAATTY 6 cut(s) 1600, 1792, 1991, 2006, 2827, 2879
AcuI CTGAAG 6 cut(s) 548, 869, 1497, 1796, 2243, 3134
AcvI CACGTG 1 cut(s) 1496
AdeI CACNNNGTG 1 cut(s) 3232
AfaI GTAC 8 cut(s) 443, 506, 795, 1088, 2083, 2381, 2701, 2998
AfeI AGCGCT 1 cut(s) 838
AflII CTTAAG 1 cut(s) 430
AflIII ACRYGT 1 cut(s) 2376
AjiI CACGTC 3 cut(s) 394, 2851, 2932
AjuI GAANNNNNNNTTGG 2 cut(s) 860, 892
AleI CACNNNNGTG 2 cut(s) 2757, 3004
AloI GAACNNNNNNTCC 4 cut(s) 163, 164, 195, 196
Alw21I GWGCWC 2 cut(s) 1501, 3014
Alw26I GTCTC 8 cut(s) 117, 420, 636, 1125, 1138, 1329, 1925, 2990
AlwI GGATC 9 cut(s) 27, 839, 1498, 1776, 1789, 2731, 3365, 3450, 3476
AlwNI CAGNNNCTG 2 cut(s) 28, 1508
Ama87I CYCGRG 1 cut(s) 1533
Aor13HI TCCGGA 1 cut(s) 2459
Aor51HI AGCGCT 1 cut(s) 838
ApeKI GCWGC 9 cut(s) 621, 785, 1433, 2290, 2762, 2765, 2959, 2962, 3276
ApoI RAATTY 6 cut(s) 1600, 1792, 1991, 2006, 2827, 2879
AspA2I CCTAGG 1 cut(s) 1172
AspLEI GCGC 4 cut(s) 839, 2959, 3146, 3218
AspS9I GGNCC 8 cut(s) 217, 352, 367, 649, 2494, 3283, 3335, 3380
AsuC2I CCSGG 5 cut(s) 17, 371, 986, 3281, 3354
AsuHPI GGTGA 7 cut(s) 16, 197, 488, 550, 2785, 3060, 3070
AsuNHI GCTAGC 1 cut(s) 1274
AvaI CYCGRG 1 cut(s) 1533
AvaII GGWCC 4 cut(s) 217, 367, 649, 3380
AvrII CCTAGG 1 cut(s) 1172
AxyI CCTNAGG 1 cut(s) 1800
BaeGI GKGCMC 2 cut(s) 1588, 2443
BamHI GGATCC 1 cut(s) 1781
BanI GGYRCC 3 cut(s) 499, 1583, 2438
BanII GRGCYC 2 cut(s) 92, 1534
BauI CACGAG 4 cut(s) 926, 1054, 3013, 3150
BbrPI CACGTG 1 cut(s) 1496
Bbv12I GWGCWC 2 cut(s) 1501, 3014
BbvCI CCTCAGC 2 cut(s) 380, 485
BbvI GCAGC 9 cut(s) 633, 772, 1420, 2302, 2749, 2752, 2949, 2971, 3288
BccI CCATC 8 cut(s) 265, 1105, 1520, 1854, 1991, 2919, 3096, 3383
BcgI CGANNNNNNTGC 4 cut(s) 1204, 1238, 2189, 2223
BclI TGATCA 1 cut(s) 2193
BcnI CCSGG 5 cut(s) 17, 371, 986, 3281, 3354
BcoDI GTCTC 8 cut(s) 117, 420, 636, 1125, 1138, 1329, 1925, 2990
BfmI CTRYAG 2 cut(s) 741, 3219
BfoI RGCGCY 2 cut(s) 840, 3147
BfrI CTTAAG 1 cut(s) 430
BglI GCCNNNNNGGC 2 cut(s) 395, 2055
BlnI CCTAGG 1 cut(s) 1172
BlpI GCTNAGC 1 cut(s) 2316
BmcAI AGTACT 1 cut(s) 1088
Bme18I GGWCC 4 cut(s) 217, 367, 649, 3380
BmeT110I CYCGRG 1 cut(s) 1533
BmgBI CACGTC 3 cut(s) 394, 2851, 2932
BmgT120I GGNCC 8 cut(s) 217, 352, 367, 649, 2494, 3283, 3335, 3380
BmrI ACTGGG 2 cut(s) 784, 3422
BmsI GCATC 4 cut(s) 734, 1663, 2209, 2292
BmtI GCTAGC 1 cut(s) 1278
BmuI ACTGGG 2 cut(s) 784, 3422
BpmI CTGGAG 3 cut(s) 76, 1311, 1485
Bpu10I CCTNAGC 3 cut(s) 380, 485, 1209
Bpu1102I GCTNAGC 1 cut(s) 2316
BpuEI CTTGAG 7 cut(s) 466, 566, 648, 1304, 1332, 3010, 3040
BpuMI CCSGG 5 cut(s) 17, 371, 986, 3281, 3354
Bsa29I ATCGAT 1 cut(s) 2914
BsaAI YACGTR 3 cut(s) 337, 1496, 2659
BsaBI GATNNNNATC 1 cut(s) 1293
BsaWI WCCGGW 1 cut(s) 2459
BsaXI ACNNNNNCTCC 6 cut(s) 442, 472, 938, 968, 2505, 2535
Bse118I RCCGGY 2 cut(s) 1472, 3019
Bse1I ACTGG 7 cut(s) 779, 976, 1618, 2582, 2966, 3064, 3428
Bse21I CCTNAGG 1 cut(s) 1800
Bse3DI GCAATG 4 cut(s) 652, 1396, 1645, 1947
Bse8I GATNNNNATC 1 cut(s) 1293
BseAI TCCGGA 1 cut(s) 2459
BseCI ATCGAT 1 cut(s) 2914
BseGI GGATG 4 cut(s) 1102, 1294, 2456, 3088
BseJI GATNNNNATC 1 cut(s) 1293
BseMI GCAATG 4 cut(s) 652, 1396, 1645, 1947
BseNI ACTGG 7 cut(s) 779, 976, 1618, 2582, 2966, 3064, 3428
BseSI GKGCMC 2 cut(s) 1588, 2443
BseX3I CGGCCG 2 cut(s) 387, 789
BseXI GCAGC 9 cut(s) 633, 772, 1420, 2302, 2749, 2752, 2949, 2971, 3288
BseYI CCCAGC 2 cut(s) 421, 2768
BsgI GTGCAG 1 cut(s) 1239
Bsh1236I CGCG 1 cut(s) 3216
Bsh1285I CGRYCG 4 cut(s) 390, 792, 2918, 3463
BshNI GGYRCC 3 cut(s) 499, 1583, 2438
BshVI ATCGAT 1 cut(s) 2914
BsiEI CGRYCG 4 cut(s) 390, 792, 2918, 3463
BsiHKAI GWGCWC 2 cut(s) 1501, 3014
BsiHKCI CYCGRG 1 cut(s) 1533
BsiWI CGTACG 2 cut(s) 504, 793
BslFI GGGAC 6 cut(s) 230, 380, 1001, 2416, 2918, 3410
BsmAI GTCTC 8 cut(s) 117, 420, 636, 1125, 1138, 1329, 1925, 2990
BsmFI GGGAC 6 cut(s) 230, 380, 1001, 2416, 2918, 3410
BsmI GAATGC 1 cut(s) 1957
BsoBI CYCGRG 1 cut(s) 1533
Bsp1286I GDGCHC 6 cut(s) 92, 1501, 1534, 1588, 2443, 3014
Bsp13I TCCGGA 1 cut(s) 2459
Bsp1720I GCTNAGC 1 cut(s) 2316
Bsp19I CCATGG 1 cut(s) 2755
BspDI ATCGAT 1 cut(s) 2914
BspEI TCCGGA 1 cut(s) 2459
BspFNI CGCG 1 cut(s) 3216
BspHI TCATGA 1 cut(s) 2475
BspOI GCTAGC 1 cut(s) 1278
BspPI GGATC 9 cut(s) 27, 839, 1498, 1776, 1789, 2731, 3365, 3450, 3476
BspQI GCTCTTC 3 cut(s) 611, 888, 3266
BspT107I GGYRCC 3 cut(s) 499, 1583, 2438
BspTI CTTAAG 1 cut(s) 430
BsrDI GCAATG 4 cut(s) 652, 1396, 1645, 1947
BsrFI RCCGGY 2 cut(s) 1472, 3019
BsrI ACTGG 7 cut(s) 779, 976, 1618, 2582, 2966, 3064, 3428
BssAI RCCGGY 2 cut(s) 1472, 3019
BssSI CACGAG 4 cut(s) 926, 1054, 3013, 3150
BssT1I CCWWGG 3 cut(s) 1172, 1420, 2755
Bst2BI CACGAG 4 cut(s) 926, 1054, 3013, 3150
Bst4CI ACNGT 6 cut(s) 60, 1969, 2086, 3384, 3424, 3464
Bst6I CTCTTC 8 cut(s) 249, 611, 888, 2112, 2458, 2685, 2797, 3266
BstAFI CTTAAG 1 cut(s) 430
BstAPI GCANNNNNTGC 2 cut(s) 1074, 2051
BstBAI YACGTR 3 cut(s) 337, 1496, 2659
BstC8I GCNNGC 7 cut(s) 765, 1276, 2047, 2056, 2313, 2795, 3100
BstDSI CCRYGG 2 cut(s) 362, 2755
BstENI CCTNNNNNAGG 2 cut(s) 166, 347
BstF5I GGATG 4 cut(s) 1102, 1294, 2456, 3088
BstFNI CGCG 1 cut(s) 3216
BstH2I RGCGCY 2 cut(s) 840, 3147
BstHHI GCGC 4 cut(s) 839, 2959, 3146, 3218
BstMAI GTCTC 8 cut(s) 117, 420, 636, 1125, 1138, 1329, 1925, 2990
BstMCI CGRYCG 4 cut(s) 390, 792, 2918, 3463
BstNSI RCATGY 4 cut(s) 1702, 2138, 2239, 2380
BstSFI CTRYAG 2 cut(s) 741, 3219
BstSLI GKGCMC 2 cut(s) 1588, 2443
BstUI CGCG 1 cut(s) 3216
BstV1I GCAGC 9 cut(s) 633, 772, 1420, 2302, 2749, 2752, 2949, 2971, 3288
BstX2I RGATCY 3 cut(s) 1781, 3455, 3468
BstYI RGATCY 3 cut(s) 1781, 3455, 3468
BstZI CGGCCG 2 cut(s) 387, 789
Bsu15I ATCGAT 1 cut(s) 2914
Bsu36I CCTNAGG 1 cut(s) 1800
BsuTUI ATCGAT 1 cut(s) 2914
BtgI CCRYGG 2 cut(s) 362, 2755
BtgZI GCGATG 1 cut(s) 1229
BtrI CACGTC 3 cut(s) 394, 2851, 2932
BtsCI GGATG 4 cut(s) 1102, 1294, 2456, 3088
BtsIMutI CAGTG 5 cut(s) 772, 2589, 2634, 2973, 3435
Cac8I GCNNGC 7 cut(s) 765, 1276, 2047, 2056, 2313, 2795, 3100
CaiI CAGNNNCTG 2 cut(s) 28, 1508
CciI TCATGA 1 cut(s) 2475
CfoI GCGC 4 cut(s) 839, 2959, 3146, 3218
Cfr10I RCCGGY 2 cut(s) 1472, 3019
Cfr13I GGNCC 8 cut(s) 217, 352, 367, 649, 2494, 3283, 3335, 3380
ClaI ATCGAT 1 cut(s) 2914
CpoI CGGWCCG 1 cut(s) 3380
Csp6I GTAC 8 cut(s) 442, 505, 794, 1087, 2082, 2380, 2700, 2997
CspI CGGWCCG 1 cut(s) 3380
CviQI GTAC 8 cut(s) 442, 505, 794, 1087, 2082, 2380, 2700, 2997
DraIII CACNNNGTG 1 cut(s) 3232
EaeI YGGCCR 3 cut(s) 387, 789, 3344
EagI CGGCCG 2 cut(s) 387, 789
Eam1104I CTCTTC 8 cut(s) 249, 611, 888, 2112, 2458, 2685, 2797, 3266
EarI CTCTTC 8 cut(s) 249, 611, 888, 2112, 2458, 2685, 2797, 3266
EciI GGCGGA 2 cut(s) 165, 480
EclXI CGGCCG 2 cut(s) 387, 789
Eco130I CCWWGG 3 cut(s) 1172, 1420, 2755
Eco24I GRGCYC 2 cut(s) 92, 1534
Eco32I GATATC 2 cut(s) 781, 3052
Eco47I GGWCC 4 cut(s) 217, 367, 649, 3380
Eco47III AGCGCT 1 cut(s) 838
Eco52I CGGCCG 2 cut(s) 387, 789
Eco57I CTGAAG 6 cut(s) 548, 869, 1497, 1796, 2243, 3134
Eco72I CACGTG 1 cut(s) 1496
Eco81I CCTNAGG 1 cut(s) 1800
Eco88I CYCGRG 1 cut(s) 1533
EcoNI CCTNNNNNAGG 2 cut(s) 166, 347
EcoO109I RGGNCCY 1 cut(s) 367
EcoRV GATATC 2 cut(s) 781, 3052
EcoT14I CCWWGG 3 cut(s) 1172, 1420, 2755
EcoT22I ATGCAT 1 cut(s) 2202
EcoT38I GRGCYC 2 cut(s) 92, 1534
ErhI CCWWGG 3 cut(s) 1172, 1420, 2755
FaqI GGGAC 6 cut(s) 230, 380, 1001, 2416, 2918, 3410
FauI CCCGC 1 cut(s) 602
FbaI TGATCA 1 cut(s) 2193
FblI GTMKAC 1 cut(s) 189
FokI GGATG 4 cut(s) 1089, 1281, 2443, 3075
FriOI GRGCYC 2 cut(s) 92, 1534
FspI TGCGCA 1 cut(s) 2958
GlaI GCGC 4 cut(s) 838, 2958, 3145, 3217
GsaI CCCAGC 2 cut(s) 425, 2772
GsuI CTGGAG 3 cut(s) 76, 1311, 1485
HaeII RGCGCY 2 cut(s) 840, 3147
HhaI GCGC 4 cut(s) 839, 2959, 3146, 3218
Hin6I GCGC 4 cut(s) 837, 2957, 3144, 3216
HinP1I GCGC 4 cut(s) 837, 2957, 3144, 3216
HincII GTYRAC 3 cut(s) 52, 190, 562
HindII GTYRAC 3 cut(s) 52, 190, 562
HindIII AAGCTT 4 cut(s) 1382, 2309, 3044, 3195
HinfI GANTC 7 cut(s) 235, 1025, 1118, 1177, 1741, 2165, 2639
HphI GGTGA 7 cut(s) 16, 197, 488, 550, 2785, 3060, 3070
Hpy166II GTNNAC 7 cut(s) 7, 52, 190, 562, 1417, 2999, 3025
Hpy8I GTNNAC 7 cut(s) 7, 52, 190, 562, 1417, 2999, 3025
Hpy99I CGWCG 1 cut(s) 395
HpyCH4III ACNGT 6 cut(s) 60, 1969, 2086, 3384, 3424, 3464
HspAI GCGC 4 cut(s) 837, 2957, 3144, 3216
KflI GGGWCCC 1 cut(s) 367
Kpn2I TCCGGA 1 cut(s) 2459
Ksp22I TGATCA 1 cut(s) 2193
LguI GCTCTTC 3 cut(s) 611, 888, 3266
Lsp1109I GCAGC 9 cut(s) 633, 772, 1420, 2302, 2749, 2752, 2949, 2971, 3288
LweI GCATC 4 cut(s) 734, 1663, 2209, 2292
MaeIII GTNAC 8 cut(s) 458, 1007, 1058, 1754, 2584, 2612, 2651, 3066
MfeI CAATTG 3 cut(s) 327, 1651, 1866
MflI RGATCY 3 cut(s) 1781, 3455, 3468
MhlI GDGCHC 6 cut(s) 92, 1501, 1534, 1588, 2443, 3014
MlyI GAGTC 4 cut(s) 229, 1019, 1127, 1186
MmeI TCCRAC 4 cut(s) 1104, 1809, 2125, 3446
Mph1103I ATGCAT 1 cut(s) 2202
MroI TCCGGA 1 cut(s) 2459
MseI TTAA 6 cut(s) 431, 1367, 1404, 1661, 1872, 1985
MslI CAYNNNNRTG 3 cut(s) 2039, 2757, 3004
MspA1I CMGCKG 3 cut(s) 624, 1691, 2962
MspCI CTTAAG 1 cut(s) 430
MunI CAATTG 3 cut(s) 327, 1651, 1866
Mva1269I GAATGC 1 cut(s) 1957
MvnI CGCG 1 cut(s) 3216
NciI CCSGG 5 cut(s) 17, 371, 986, 3281, 3354
NcoI CCATGG 1 cut(s) 2755
NheI GCTAGC 1 cut(s) 1274
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 4 cut(s) 1007, 1754, 2584, 3066
NsbI TGCGCA 1 cut(s) 2958
NsiI ATGCAT 1 cut(s) 2202
NspI RCATGY 4 cut(s) 1702, 2138, 2239, 2380
OliI CACNNNNGTG 2 cut(s) 2757, 3004
PaeR7I CTCGAG 1 cut(s) 1533
PagI TCATGA 1 cut(s) 2475
PciI ACATGT 1 cut(s) 2376
PciSI GCTCTTC 3 cut(s) 611, 888, 3266
PcsI WCGNNNNNNNCGW 3 cut(s) 195, 789, 3384
PctI GAATGC 1 cut(s) 1957
PfeI GAWTC 3 cut(s) 1741, 2165, 2639
Pfl23II CGTACG 2 cut(s) 504, 793
PflFI GACNNNGTC 1 cut(s) 2930
PflMI CCANNNNNTGG 1 cut(s) 2756
PfoI TCCNGGA 2 cut(s) 92, 1327
Ple19I CGATCG 1 cut(s) 2918
PleI GAGTC 4 cut(s) 229, 1019, 1126, 1185
PmaCI CACGTG 1 cut(s) 1496
PmlI CACGTG 1 cut(s) 1496
PpsI GAGTC 4 cut(s) 229, 1019, 1126, 1185
Ppu21I YACGTR 3 cut(s) 337, 1496, 2659
PpuMI RGGWCCY 1 cut(s) 367
PscI ACATGT 1 cut(s) 2376
Psp5II RGGWCCY 1 cut(s) 367
PspCI CACGTG 1 cut(s) 1496
PspFI CCCAGC 2 cut(s) 421, 2768
PspLI CGTACG 2 cut(s) 504, 793
PspPI GGNCC 8 cut(s) 217, 352, 367, 649, 2494, 3283, 3335, 3380
PspPPI RGGWCCY 1 cut(s) 367
PspXI VCTCGAGB 1 cut(s) 1533
PstNI CAGNNNCTG 2 cut(s) 28, 1508
PsuI RGATCY 3 cut(s) 1781, 3455, 3468
PsyI GACNNNGTC 1 cut(s) 2930
PvuI CGATCG 1 cut(s) 2918
PvuII CAGCTG 3 cut(s) 624, 1691, 2962
RsaI GTAC 8 cut(s) 443, 506, 795, 1088, 2083, 2381, 2701, 2998
RsaNI GTAC 8 cut(s) 442, 505, 794, 1087, 2082, 2380, 2700, 2997
RseI CAYNNNNRTG 3 cut(s) 2039, 2757, 3004
Rsr2I CGGWCCG 1 cut(s) 3380
RsrII CGGWCCG 1 cut(s) 3380
SalI GTCGAC 1 cut(s) 188
SapI GCTCTTC 3 cut(s) 611, 888, 3266
SaqAI TTAA 6 cut(s) 431, 1367, 1404, 1661, 1872, 1985
Sau96I GGNCC 8 cut(s) 217, 352, 367, 649, 2494, 3283, 3335, 3380
ScaI AGTACT 1 cut(s) 1088
SchI GAGTC 4 cut(s) 229, 1019, 1127, 1186
SduI GDGCHC 6 cut(s) 92, 1501, 1534, 1588, 2443, 3014
SfaNI GCATC 4 cut(s) 734, 1663, 2209, 2292
SfcI CTRYAG 2 cut(s) 741, 3219
Sfr274I CTCGAG 1 cut(s) 1533
SgrAI CRCCGGYG 1 cut(s) 1472
SinI GGWCC 4 cut(s) 217, 367, 649, 3380
SlaI CTCGAG 1 cut(s) 1533
SmiMI CAYNNNNRTG 3 cut(s) 2039, 2757, 3004
SmlI CTYRAG 9 cut(s) 430, 445, 581, 663, 1319, 1347, 1533, 2989, 3055
SmoI CTYRAG 9 cut(s) 430, 445, 581, 663, 1319, 1347, 1533, 2989, 3055
SspI AATATT 1 cut(s) 1004
StyI CCWWGG 3 cut(s) 1172, 1420, 2755
TaaI ACNGT 6 cut(s) 60, 1969, 2086, 3384, 3424, 3464
TatI WGTACW 2 cut(s) 1086, 2379
TfiI GAWTC 3 cut(s) 1741, 2165, 2639
Tru1I TTAA 6 cut(s) 431, 1367, 1404, 1661, 1872, 1985
Tru9I TTAA 6 cut(s) 431, 1367, 1404, 1661, 1872, 1985
TscAI CASTG 5 cut(s) 779, 2589, 2641, 2973, 3435
TseFI GTSAC 4 cut(s) 1007, 1754, 2584, 3066
TseI GCWGC 9 cut(s) 621, 785, 1433, 2290, 2762, 2765, 2959, 2962, 3276
Tsp45I GTSAC 4 cut(s) 1007, 1754, 2584, 3066
TspDTI ATGAA 8 cut(s) 258, 264, 1091, 1283, 1661, 2121, 2492, 3257
TspRI CASTG 5 cut(s) 779, 2589, 2641, 2973, 3435
Tth111I GACNNNGTC 1 cut(s) 2930
Van91I CCANNNNNTGG 1 cut(s) 2756
Vha464I CTTAAG 1 cut(s) 430
VpaK11BI GGWCC 4 cut(s) 217, 367, 649, 3380
XagI CCTNNNNNAGG 2 cut(s) 166, 347
XapI RAATTY 6 cut(s) 1600, 1792, 1991, 2006, 2827, 2879
XceI RCATGY 4 cut(s) 1702, 2138, 2239, 2380
XcmI CCANNNNNNNNNTGG 2 cut(s) 1087, 1835
XhoI CTCGAG 1 cut(s) 1533
XmaJI CCTAGG 1 cut(s) 1172
XmiI GTMKAC 1 cut(s) 189
ZrmI AGTACT 1 cut(s) 1088
Zsp2I ATGCAT 1 cut(s) 2202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.