TATA-binding protein-associated factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54280 AT3G54280 |
| fragaria_vesca | FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 FvH4_3g46101 |
| malus_domestica | MD03G1000900.v1.1 MD11G1000100.v1.1 |
| prunus_persica | Prupe.6G000100_v2.0.a1 |
| pyrus_communis | pycom03g00100 pycom11g00010 |
| rosa_chinensis | RchiOBHm_Chr5g0084181 |
| rosa_laevigata | RLG00000037090 |
| rosa_multiflora | Rmu_sc0005537.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00000450 |
| rosa_rugosa | Rorug05G0489600 Rorug05G0489700 |
| rosa_samantha | Rh5AG542400 Rh5BG568400 Rh5CG590000 Rh5DG576400 |
| rosa_wichuraiana | Rw5G050450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2740, 2789 |
| Acc16I | TGCGCA | 1 cut(s) | 1257 |
| Acc36I | ACCTGC | 4 cut(s) | 1249, 2740, 2789, 2893 |
| AccB1I | GGYRCC | 1 cut(s) | 4013 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 4060, 4214 |
| AccBSI | CCGCTC | 1 cut(s) | 194 |
| AccI | GTMKAC | 4 cut(s) | 1219, 1642, 3014, 3592 |
| AclI | AACGTT | 1 cut(s) | 4375 |
| AclWI | GGATC | 9 cut(s) | 2535, 2548, 2699, 2897, 3431, 3444, 3761, 3774, 3837 |
| AcoI | YGGCCR | 2 cut(s) | 2213, 3933 |
| AcsI | RAATTY | 7 cut(s) | 819, 966, 1454, 2012, 2257, 2283, 2851 |
| AcuI | CTGAAG | 5 cut(s) | 1163, 1400, 1649, 3705, 4245 |
| AfaI | GTAC | 8 cut(s) | 936, 1545, 1701, 2203, 3801, 4176, 4309, 4556 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 782, 2106, 2149, 2749, 3992, 3993, 4060, 4214 |
| AflII | CTTAAG | 1 cut(s) | 3692 |
| AflIII | ACRYGT | 3 cut(s) | 3205, 3428, 4732 |
| AjiI | CACGTC | 1 cut(s) | 348 |
| AjnI | CCWGG | 5 cut(s) | 1017, 1758, 1950, 2827, 3792 |
| AleI | CACNNNNGTG | 2 cut(s) | 2092, 3686 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2874, 2906 |
| Alw21I | GWGCWC | 4 cut(s) | 131, 394, 766, 1561 |
| Alw26I | GTCTC | 7 cut(s) | 26, 1071, 1189, 1347, 1525, 3220, 4135 |
| AlwI | GGATC | 9 cut(s) | 2535, 2548, 2699, 2897, 3431, 3444, 3761, 3774, 3837 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1793 |
| Ama87I | CYCGRG | 1 cut(s) | 2631 |
| ApoI | RAATTY | 7 cut(s) | 819, 966, 1454, 2012, 2257, 2283, 2851 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 704, 716, 736, 748 |
| AseI | ATTAAT | 2 cut(s) | 2045, 3060 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1458 |
| AspLEI | GCGC | 3 cut(s) | 112, 1258, 4611 |
| AspS9I | GGNCC | 9 cut(s) | 4, 1297, 1336, 1356, 1765, 2097, 4198, 4536, 4669 |
| AsuHPI | GGTGA | 4 cut(s) | 1853, 2243, 3841, 3916 |
| AsuII | TTCGAA | 3 cut(s) | 710, 2534, 3117 |
| AvaI | CYCGRG | 1 cut(s) | 2631 |
| AvaII | GGWCC | 4 cut(s) | 1297, 1356, 1765, 4669 |
| AxyI | CCTNAGG | 1 cut(s) | 117 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 168, 201, 1167, 1200, 4699, 4732 |
| BalI | TGGCCA | 2 cut(s) | 2215, 3935 |
| BamHI | GGATCC | 3 cut(s) | 2540, 3436, 3766 |
| BanI | GGYRCC | 1 cut(s) | 4013 |
| BanII | GRGCYC | 1 cut(s) | 131 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1234, 1266, 4167, 4199 |
| BbsI | GAAGAC | 5 cut(s) | 555, 1236, 1962, 2187, 2903 |
| Bbv12I | GWGCWC | 4 cut(s) | 131, 394, 766, 1561 |
| BbvCI | CCTCAGC | 2 cut(s) | 1816, 3342 |
| BceAI | ACGGC | 4 cut(s) | 93, 1682, 1718, 4498 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 33, 2376, 2410 |
| BciT130I | CCWGG | 5 cut(s) | 1019, 1760, 1952, 2829, 3794 |
| BciVI | GTATCC | 3 cut(s) | 169, 1168, 2165 |
| BclI | TGATCA | 5 cut(s) | 433, 919, 1525, 4129, 4737 |
| BcoDI | GTCTC | 7 cut(s) | 26, 1071, 1189, 1347, 1525, 3220, 4135 |
| BfmI | CTRYAG | 3 cut(s) | 1857, 3459, 3723 |
| BfrI | CTTAAG | 1 cut(s) | 3692 |
| BfuAI | ACCTGC | 4 cut(s) | 1249, 2740, 2789, 2893 |
| BfuI | GTATCC | 3 cut(s) | 169, 1168, 2165 |
| BglII | AGATCT | 1 cut(s) | 3496 |
| BlpI | GCTNAGC | 1 cut(s) | 894 |
| BmcAI | AGTACT | 1 cut(s) | 2203 |
| Bme1390I | CCNGG | 5 cut(s) | 1019, 1760, 1952, 2829, 3794 |
| Bme18I | GGWCC | 4 cut(s) | 1297, 1356, 1765, 4669 |
| BmeT110I | CYCGRG | 1 cut(s) | 2631 |
| BmgBI | CACGTC | 1 cut(s) | 348 |
| BmgT120I | GGNCC | 9 cut(s) | 4, 1297, 1336, 1356, 1765, 2097, 4198, 4536, 4669 |
| BmrFI | CCNGG | 5 cut(s) | 1019, 1760, 1952, 2829, 3794 |
| BmrI | ACTGGG | 2 cut(s) | 181, 1590 |
| BmuI | ACTGGG | 2 cut(s) | 181, 1590 |
| BpiI | GAAGAC | 5 cut(s) | 555, 1236, 1962, 2187, 2903 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4138, 4170 |
| BpmI | CTGGAG | 8 cut(s) | 1014, 1040, 1524, 1781, 2055, 2838, 4219, 4283 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1816, 3342 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 894 |
| Bpu14I | TTCGAA | 3 cut(s) | 710, 2534, 3117 |
| BpuEI | CTTGAG | 5 cut(s) | 145, 1545, 3438, 3634, 4587 |
| BsaAI | YACGTR | 2 cut(s) | 1547, 3380 |
| BsaBI | GATNNNNATC | 1 cut(s) | 4128 |
| BsaI | GGTCTC | 1 cut(s) | 1189 |
| BsaJI | CCNNGG | 8 cut(s) | 449, 668, 940, 1179, 1950, 1967, 2087, 4054 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1503, 1533, 4185, 4215 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 782, 2106, 2149, 2749, 3992, 3993, 4060, 4214 |
| Bse1I | ACTGG | 9 cut(s) | 55, 176, 718, 1339, 1428, 1541, 1596, 2038, 3526 |
| Bse21I | CCTNAGG | 1 cut(s) | 117 |
| Bse3DI | GCAATG | 4 cut(s) | 99, 336, 1035, 4611 |
| Bse8I | GATNNNNATC | 1 cut(s) | 4128 |
| BseBI | CCWGG | 5 cut(s) | 1019, 1760, 1952, 2829, 3794 |
| BseDI | CCNNGG | 8 cut(s) | 449, 668, 940, 1179, 1950, 1967, 2087, 4054 |
| BseGI | GGATG | 9 cut(s) | 112, 529, 1378, 1591, 1804, 1900, 1907, 2611, 3252 |
| BseJI | GATNNNNATC | 1 cut(s) | 4128 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 782, 2106, 2149, 2749, 3992, 3993, 4060, 4214 |
| BseMI | GCAATG | 4 cut(s) | 99, 336, 1035, 4611 |
| BseNI | ACTGG | 9 cut(s) | 55, 176, 718, 1339, 1428, 1541, 1596, 2038, 3526 |
| BseYI | CCCAGC | 3 cut(s) | 6, 281, 4788 |
| BsgI | GTGCAG | 2 cut(s) | 4047, 4263 |
| BshNI | GGYRCC | 1 cut(s) | 4013 |
| BsiHKAI | GWGCWC | 4 cut(s) | 131, 394, 766, 1561 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2631 |
| BsiWI | CGTACG | 1 cut(s) | 1699 |
| BslFI | GGGAC | 8 cut(s) | 110, 423, 595, 820, 2351, 3526, 3697, 4085 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 782, 2106, 2149, 2749, 3992, 3993, 4060, 4214 |
| BsmAI | GTCTC | 7 cut(s) | 26, 1071, 1189, 1347, 1525, 3220, 4135 |
| BsmBI | CGTCTC | 1 cut(s) | 26 |
| BsmFI | GGGAC | 8 cut(s) | 110, 423, 595, 820, 2351, 3526, 3697, 4085 |
| BsmI | GAATGC | 5 cut(s) | 1432, 1852, 2888, 3876, 4750 |
| Bso31I | GGTCTC | 1 cut(s) | 1189 |
| BsoBI | CYCGRG | 1 cut(s) | 2631 |
| Bsp119I | TTCGAA | 3 cut(s) | 710, 2534, 3117 |
| Bsp1286I | GDGCHC | 4 cut(s) | 131, 394, 766, 1561 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 894 |
| Bsp19I | CCATGG | 2 cut(s) | 940, 1179 |
| BspHI | TCATGA | 2 cut(s) | 838, 1606 |
| BspMAI | CTGCAG | 2 cut(s) | 3463, 3727 |
| BspMI | ACCTGC | 4 cut(s) | 1249, 2740, 2789, 2893 |
| BspPI | GGATC | 9 cut(s) | 2535, 2548, 2699, 2897, 3431, 3444, 3761, 3774, 3837 |
| BspT104I | TTCGAA | 3 cut(s) | 710, 2534, 3117 |
| BspT107I | GGYRCC | 1 cut(s) | 4013 |
| BspTI | CTTAAG | 1 cut(s) | 3692 |
| BspTNI | GGTCTC | 1 cut(s) | 1189 |
| BsrBI | CCGCTC | 1 cut(s) | 194 |
| BsrDI | GCAATG | 4 cut(s) | 99, 336, 1035, 4611 |
| BsrI | ACTGG | 9 cut(s) | 55, 176, 718, 1339, 1428, 1541, 1596, 2038, 3526 |
| BssECI | CCNNGG | 8 cut(s) | 449, 668, 940, 1179, 1950, 1967, 2087, 4054 |
| BssNAI | GTATAC | 1 cut(s) | 1220 |
| BssT1I | CCWWGG | 6 cut(s) | 449, 668, 940, 1179, 1967, 4054 |
| Bst1107I | GTATAC | 1 cut(s) | 1220 |
| Bst2UI | CCWGG | 5 cut(s) | 1019, 1760, 1952, 2829, 3794 |
| Bst4CI | ACNGT | 5 cut(s) | 1235, 1505, 2091, 3214, 3371 |
| Bst6I | CTCTTC | 5 cut(s) | 1067, 1192, 1376, 3223, 4185 |
| BstAFI | CTTAAG | 1 cut(s) | 3692 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1711, 1793, 4250 |
| BstBAI | YACGTR | 2 cut(s) | 1547, 3380 |
| BstBI | TTCGAA | 3 cut(s) | 710, 2534, 3117 |
| BstC8I | GCNNGC | 6 cut(s) | 343, 1743, 1756, 2875, 4030, 4034 |
| BstDSI | CCRYGG | 3 cut(s) | 940, 1179, 2087 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2104 |
| BstF5I | GGATG | 9 cut(s) | 112, 529, 1378, 1591, 1804, 1900, 1907, 2611, 3252 |
| BstHHI | GCGC | 3 cut(s) | 112, 1258, 4611 |
| BstMAI | GTCTC | 7 cut(s) | 26, 1071, 1189, 1347, 1525, 3220, 4135 |
| BstNI | CCWGG | 5 cut(s) | 1019, 1760, 1952, 2829, 3794 |
| BstNSI | RCATGY | 9 cut(s) | 792, 1591, 1749, 2877, 3209, 3432, 3956, 4036, 4736 |
| BstSCI | CCNGG | 5 cut(s) | 1017, 1758, 1950, 2827, 3792 |
| BstSFI | CTRYAG | 3 cut(s) | 1857, 3459, 3723 |
| BstV2I | GAAGAC | 5 cut(s) | 555, 1236, 1962, 2187, 2903 |
| BstX2I | RGATCY | 5 cut(s) | 2540, 3436, 3496, 3766, 3829 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2094, 3669, 4592 |
| BstYI | RGATCY | 5 cut(s) | 2540, 3436, 3496, 3766, 3829 |
| BstZ17I | GTATAC | 1 cut(s) | 1220 |
| Bsu36I | CCTNAGG | 1 cut(s) | 117 |
| BsuI | GTATCC | 3 cut(s) | 169, 1168, 2165 |
| BtgI | CCRYGG | 3 cut(s) | 940, 1179, 2087 |
| BtrI | CACGTC | 1 cut(s) | 348 |
| BtsCI | GGATG | 9 cut(s) | 112, 529, 1378, 1591, 1804, 1900, 1907, 2611, 3252 |
| BtsI | GCAGTG | 1 cut(s) | 1643 |
| BtsIMutI | CAGTG | 9 cut(s) | 48, 1240, 1643, 2330, 2708, 3367, 3681, 4325, 4776 |
| BveI | ACCTGC | 4 cut(s) | 1249, 2740, 2789, 2893 |
| Cac8I | GCNNGC | 6 cut(s) | 343, 1743, 1756, 2875, 4030, 4034 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1793 |
| CciI | TCATGA | 2 cut(s) | 838, 1606 |
| CfoI | GCGC | 3 cut(s) | 112, 1258, 4611 |
| Cfr13I | GGNCC | 9 cut(s) | 4, 1297, 1336, 1356, 1765, 2097, 4198, 4536, 4669 |
| Csp6I | GTAC | 8 cut(s) | 935, 1544, 1700, 2202, 3800, 4175, 4308, 4555 |
| CviQI | GTAC | 8 cut(s) | 935, 1544, 1700, 2202, 3800, 4175, 4308, 4555 |
| DraI | TTTAAA | 6 cut(s) | 687, 1836, 2007, 2464, 3183, 4371 |
| EaeI | YGGCCR | 2 cut(s) | 2213, 3933 |
| Eam1104I | CTCTTC | 5 cut(s) | 1067, 1192, 1376, 3223, 4185 |
| EarI | CTCTTC | 5 cut(s) | 1067, 1192, 1376, 3223, 4185 |
| EciI | GGCGGA | 1 cut(s) | 1952 |
| Ecl136II | GAGCTC | 1 cut(s) | 129 |
| Eco130I | CCWWGG | 6 cut(s) | 449, 668, 940, 1179, 1967, 4054 |
| Eco24I | GRGCYC | 1 cut(s) | 131 |
| Eco31I | GGTCTC | 1 cut(s) | 1189 |
| Eco32I | GATATC | 1 cut(s) | 288 |
| Eco47I | GGWCC | 4 cut(s) | 1297, 1356, 1765, 4669 |
| Eco53kI | GAGCTC | 1 cut(s) | 129 |
| Eco57I | CTGAAG | 5 cut(s) | 1163, 1400, 1649, 3705, 4245 |
| Eco81I | CCTNAGG | 1 cut(s) | 117 |
| Eco88I | CYCGRG | 1 cut(s) | 2631 |
| EcoICRI | GAGCTC | 1 cut(s) | 129 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2104 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1356, 1765, 4198 |
| EcoRI | GAATTC | 2 cut(s) | 1454, 2012 |
| EcoRII | CCWGG | 5 cut(s) | 1017, 1758, 1950, 2827, 3792 |
| EcoRV | GATATC | 1 cut(s) | 288 |
| EcoT14I | CCWWGG | 6 cut(s) | 449, 668, 940, 1179, 1967, 4054 |
| EcoT22I | ATGCAT | 3 cut(s) | 1593, 3923, 3954 |
| EcoT38I | GRGCYC | 1 cut(s) | 131 |
| ErhI | CCWWGG | 6 cut(s) | 449, 668, 940, 1179, 1967, 4054 |
| Esp3I | CGTCTC | 1 cut(s) | 26 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1343, 1375, 4749, 4781 |
| FaqI | GGGAC | 8 cut(s) | 110, 423, 595, 820, 2351, 3526, 3697, 4085 |
| FauNDI | CATATG | 3 cut(s) | 438, 4081, 4660 |
| FbaI | TGATCA | 5 cut(s) | 433, 919, 1525, 4129, 4737 |
| FblI | GTMKAC | 4 cut(s) | 1219, 1642, 3014, 3592 |
| FokI | GGATG | 9 cut(s) | 99, 536, 1385, 1578, 1811, 1894, 1907, 2618, 3259 |
| FriOI | GRGCYC | 1 cut(s) | 131 |
| FspI | TGCGCA | 1 cut(s) | 1257 |
| GlaI | GCGC | 3 cut(s) | 111, 1257, 4610 |
| GsaI | CCCAGC | 3 cut(s) | 10, 285, 4792 |
| GsuI | CTGGAG | 8 cut(s) | 1014, 1040, 1524, 1781, 2055, 2838, 4219, 4283 |
| HhaI | GCGC | 3 cut(s) | 112, 1258, 4611 |
| Hin6I | GCGC | 3 cut(s) | 110, 1256, 4609 |
| HinP1I | GCGC | 3 cut(s) | 110, 1256, 4609 |
| HincII | GTYRAC | 1 cut(s) | 1271 |
| HindII | GTYRAC | 1 cut(s) | 1271 |
| HindIII | AAGCTT | 6 cut(s) | 358, 886, 2492, 4301, 4382, 4697 |
| HphI | GGTGA | 4 cut(s) | 1853, 2243, 3841, 3916 |
| Hpy166II | GTNNAC | 7 cut(s) | 1220, 1271, 1297, 1643, 3015, 3049, 3593 |
| Hpy8I | GTNNAC | 7 cut(s) | 1220, 1271, 1297, 1643, 3015, 3049, 3593 |
| Hpy99I | CGWCG | 1 cut(s) | 70 |
| HpyCH4III | ACNGT | 5 cut(s) | 1235, 1505, 2091, 3214, 3371 |
| HpyCH4IV | ACGT | 8 cut(s) | 347, 1546, 2147, 2936, 3045, 3379, 3802, 4375 |
| HpySE526I | ACGT | 8 cut(s) | 347, 1546, 2147, 2936, 3045, 3379, 3802, 4375 |
| HspAI | GCGC | 3 cut(s) | 110, 1256, 4609 |
| Ksp22I | TGATCA | 5 cut(s) | 433, 919, 1525, 4129, 4737 |
| LmnI | GCTCC | 8 cut(s) | 995, 1543, 2181, 2319, 3962, 4069, 4090, 4264 |
| MaeII | ACGT | 8 cut(s) | 347, 1546, 2147, 2936, 3045, 3379, 3802, 4375 |
| MaeIII | GTNAC | 9 cut(s) | 1156, 1494, 1866, 2620, 2638, 3208, 4150, 4321, 4759 |
| MbiI | CCGCTC | 1 cut(s) | 194 |
| MfeI | CAATTG | 1 cut(s) | 4778 |
| MflI | RGATCY | 5 cut(s) | 2540, 3436, 3496, 3766, 3829 |
| MhlI | GDGCHC | 4 cut(s) | 131, 394, 766, 1561 |
| MlsI | TGGCCA | 2 cut(s) | 2215, 3935 |
| MluNI | TGGCCA | 2 cut(s) | 2215, 3935 |
| MlyI | GAGTC | 9 cut(s) | 791, 1743, 2201, 2464, 2513, 2617, 2829, 3152, 4147 |
| MmeI | TCCRAC | 5 cut(s) | 2130, 2505, 2841, 4195, 4507 |
| Mox20I | TGGCCA | 2 cut(s) | 2215, 3935 |
| Mph1103I | ATGCAT | 3 cut(s) | 1593, 3923, 3954 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1458 |
| MscI | TGGCCA | 2 cut(s) | 2215, 3935 |
| Msp20I | TGGCCA | 2 cut(s) | 2215, 3935 |
| MspA1I | CMGCKG | 3 cut(s) | 1820, 2746, 3341 |
| MspCI | CTTAAG | 1 cut(s) | 3692 |
| MspR9I | CCNGG | 5 cut(s) | 1019, 1760, 1952, 2829, 3794 |
| MunI | CAATTG | 1 cut(s) | 4778 |
| Mva1269I | GAATGC | 5 cut(s) | 1432, 1852, 2888, 3876, 4750 |
| MvaI | CCWGG | 5 cut(s) | 1019, 1760, 1952, 2829, 3794 |
| NcoI | CCATGG | 2 cut(s) | 940, 1179 |
| NdeI | CATATG | 3 cut(s) | 438, 4081, 4660 |
| NmeAIII | GCCGAG | 2 cut(s) | 64, 2947 |
| NmuCI | GTSAC | 4 cut(s) | 1494, 2620, 4150, 4321 |
| NsbI | TGCGCA | 1 cut(s) | 1257 |
| NsiI | ATGCAT | 3 cut(s) | 1593, 3923, 3954 |
| NspI | RCATGY | 9 cut(s) | 792, 1591, 1749, 2877, 3209, 3432, 3956, 4036, 4736 |
| NspV | TTCGAA | 3 cut(s) | 710, 2534, 3117 |
| OliI | CACNNNNGTG | 2 cut(s) | 2092, 3686 |
| PacI | TTAATTAA | 1 cut(s) | 3408 |
| PaeI | GCATGC | 2 cut(s) | 2877, 4036 |
| PagI | TCATGA | 2 cut(s) | 838, 1606 |
| PaqCI | CACCTGC | 2 cut(s) | 2740, 2789 |
| PciI | ACATGT | 3 cut(s) | 3205, 3428, 4732 |
| PctI | GAATGC | 5 cut(s) | 1432, 1852, 2888, 3876, 4750 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1458 |
| Pfl23II | CGTACG | 1 cut(s) | 1699 |
| PflFI | GACNNNGTC | 1 cut(s) | 1733 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 4060, 4214 |
| PleI | GAGTC | 9 cut(s) | 791, 1742, 2200, 2463, 2512, 2617, 2828, 3151, 4147 |
| PpsI | GAGTC | 9 cut(s) | 791, 1742, 2200, 2463, 2512, 2617, 2828, 3151, 4147 |
| Ppu21I | YACGTR | 2 cut(s) | 1547, 3380 |
| PpuMI | RGGWCCY | 2 cut(s) | 1356, 1765 |
| PscI | ACATGT | 3 cut(s) | 3205, 3428, 4732 |
| PshBI | ATTAAT | 2 cut(s) | 2045, 3060 |
| Psp124BI | GAGCTC | 1 cut(s) | 131 |
| Psp1406I | AACGTT | 1 cut(s) | 4375 |
| Psp5II | RGGWCCY | 2 cut(s) | 1356, 1765 |
| Psp6I | CCWGG | 5 cut(s) | 1017, 1758, 1950, 2827, 3792 |
| PspFI | CCCAGC | 3 cut(s) | 6, 281, 4788 |
| PspGI | CCWGG | 5 cut(s) | 1017, 1758, 1950, 2827, 3792 |
| PspLI | CGTACG | 1 cut(s) | 1699 |
| PspPI | GGNCC | 9 cut(s) | 4, 1297, 1336, 1356, 1765, 2097, 4198, 4536, 4669 |
| PspPPI | RGGWCCY | 2 cut(s) | 1356, 1765 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2935, 2967, 3583, 3615 |
| PstI | CTGCAG | 2 cut(s) | 3463, 3727 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1793 |
| PsuI | RGATCY | 5 cut(s) | 2540, 3436, 3496, 3766, 3829 |
| PsyI | GACNNNGTC | 1 cut(s) | 1733 |
| PvuII | CAGCTG | 2 cut(s) | 1820, 3341 |
| RsaI | GTAC | 8 cut(s) | 936, 1545, 1701, 2203, 3801, 4176, 4309, 4556 |
| RsaNI | GTAC | 8 cut(s) | 935, 1544, 1700, 2202, 3800, 4175, 4308, 4555 |
| SacI | GAGCTC | 1 cut(s) | 131 |
| Sau96I | GGNCC | 9 cut(s) | 4, 1297, 1336, 1356, 1765, 2097, 4198, 4536, 4669 |
| ScaI | AGTACT | 1 cut(s) | 2203 |
| SchI | GAGTC | 9 cut(s) | 791, 1743, 2201, 2464, 2513, 2617, 2829, 3152, 4147 |
| ScrFI | CCNGG | 5 cut(s) | 1019, 1760, 1952, 2829, 3794 |
| SduI | GDGCHC | 4 cut(s) | 131, 394, 766, 1561 |
| SfcI | CTRYAG | 3 cut(s) | 1857, 3459, 3723 |
| SfuI | TTCGAA | 3 cut(s) | 710, 2534, 3117 |
| SinI | GGWCC | 4 cut(s) | 1297, 1356, 1765, 4669 |
| SmiI | ATTTAAAT | 1 cut(s) | 2007 |
| SmlI | CTYRAG | 6 cut(s) | 124, 1560, 3453, 3613, 3692, 4602 |
| SmoI | CTYRAG | 6 cut(s) | 124, 1560, 3453, 3613, 3692, 4602 |
| SphI | GCATGC | 2 cut(s) | 2877, 4036 |
| SspI | AATATT | 1 cut(s) | 613 |
| SstI | GAGCTC | 1 cut(s) | 131 |
| StyD4I | CCNGG | 5 cut(s) | 1017, 1758, 1950, 2827, 3792 |
| StyI | CCWWGG | 6 cut(s) | 449, 668, 940, 1179, 1967, 4054 |
| SwaI | ATTTAAAT | 1 cut(s) | 2007 |
| TaaI | ACNGT | 5 cut(s) | 1235, 1505, 2091, 3214, 3371 |
| TaiI | ACGT | 8 cut(s) | 350, 1549, 2150, 2939, 3048, 3382, 3805, 4378 |
| TaqII | GACCGA | 1 cut(s) | 1746 |
| TatI | WGTACW | 3 cut(s) | 2201, 4307, 4554 |
| TauI | GCSGC | 3 cut(s) | 194, 2648, 2749 |
| TscAI | CASTG | 9 cut(s) | 55, 1240, 1643, 2330, 2715, 3374, 3688, 4332, 4776 |
| TseFI | GTSAC | 4 cut(s) | 1494, 2620, 4150, 4321 |
| Tsp45I | GTSAC | 4 cut(s) | 1494, 2620, 4150, 4321 |
| TspGWI | ACGGA | 1 cut(s) | 4558 |
| TspRI | CASTG | 9 cut(s) | 55, 1240, 1643, 2330, 2715, 3374, 3688, 4332, 4776 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1733 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 4060, 4214 |
| Vha464I | CTTAAG | 1 cut(s) | 3692 |
| VpaK11BI | GGWCC | 4 cut(s) | 1297, 1356, 1765, 4669 |
| VspI | ATTAAT | 2 cut(s) | 2045, 3060 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2104 |
| XapI | RAATTY | 7 cut(s) | 819, 966, 1454, 2012, 2257, 2283, 2851 |
| XbaI | TCTAGA | 2 cut(s) | 2669, 3914 |
| XceI | RCATGY | 9 cut(s) | 792, 1591, 1749, 2877, 3209, 3432, 3956, 4036, 4736 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3028 |
| XmiI | GTMKAC | 4 cut(s) | 1219, 1642, 3014, 3592 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1458 |
| ZrmI | AGTACT | 1 cut(s) | 2203 |
| Zsp2I | ATGCAT | 3 cut(s) | 1593, 3923, 3954 |