Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009574

Physical Location & Seq

Genomic Coordinates Reverse (-)

561255 .. 564037

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00650.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTTTCTCCTTTATCTGCGTTTTTCTTGCCATGTTTCTTCCTCTTGAATCTGTCTCTGCCGAGTCATTAGACGACATCTTGGCTCCTGTTTTCTCTCCAATCATGGATGATGTCTGCAAAGACATAGAATGTGGTGAAGGGACTTGCAAGCCTTCAAGCAGTAGCACCTTCTTTTTCGAATGTCAATGTGATTCTGGGTGGAAGCAGACTACTGAGAACAGTACTGATCACTTCAAGTTTCTACCTTGTGTGATTCCCAACTGTAACCTGGATTATTCCTGTGAAAAAGCACCAGCCCCAATTCCAGATAAATCGAAGAAGGCCAACACATCAATTTTTGATCCATGCTATTGGATGGACTGTGGAGGTGGAACTTGCAACAAGACATCAAAATTGTCATACAATTGTGAATGTGGAGAAGGTTATTATAATCTGCTCAATATGACTACCCTCCCTTGCCTTAAAGAATGTTCAATTGGAGTCGATTGTGCAAACCTTGGGATTTCGGTGTCAAATAAATGTACTAGTCCTCCAACTCCTGCATTGGCTGACAGCGGTAGCTTGACCACACATGCAAACTCAATTACGTTGGTGGCCCTAATAATTTTGGTTCTTATGCTTTCATGGGATATGGAATTAGTCAGGTTAGTTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

23.77

Weight (kDa)

4.42

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14746 AT4G14746
fragaria_vesca	FvH4_4g00650 FvH4_4g00650 FvH4_4g00650 FvH4_4g00650 FvH4_4g01001
malus_domestica	MD13G1198400.v1.1 MD16G1198500.v1.1
prunus_persica	Prupe.1G020200_v2.0.a1
pyrus_communis	pycom13g17230 pycom16g16740
rosa_chinensis	RchiOBHm_Chr4g0387581
rosa_laevigata	RLG00000010110
rosa_multiflora	Rmu_sc0007248.1_g000007
rosa_roxburghii	Rroxscaffold_5G00334270
rosa_rugosa	Rorug03G0310800
rosa_samantha	Rh4AG016900 Rh4BG011700 Rh4CG018000 Rh4DG012600
rosa_wichuraiana	Rw4G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	1 cut(s)	338
AfaI	GTAC	2 cut(s)	226, 526
AgsI	TTSAA	4 cut(s)	50, 159, 238, 477
AhlI	ACTAGT	1 cut(s)	527
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	2 cut(s)	564, 657
AluI	AGCT	2 cut(s)	564, 657
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	2 cut(s)	324, 597
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	1 cut(s)	149
AsuII	TTCGAA	1 cut(s)	180
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	272
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	61
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	1 cut(s)	528
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	517, 547
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	2 cut(s)	115, 363
BseMII	CTCAG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	326, 599
BslFI	GGGAC	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	326, 599
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	229, 343
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	2 cut(s)	326, 599
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	338
BspT104I	TTCGAA	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	2 cut(s)	229, 343
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	3 cut(s)	224, 266, 365
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	115, 363
BstKTI	GATC	2 cut(s)	232, 346
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	229, 343
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	326, 599
BtsCI	GGATG	2 cut(s)	115, 363
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	225, 525
CviAII	CATG	5 cut(s)	34, 106, 348, 575, 627
CviJI	RGCY	9 cut(s)	5, 86, 154, 299, 326, 551, 564, 599, 657
CviKI_1	RGCY	9 cut(s)	5, 86, 154, 299, 326, 551, 564, 599, 657
CviQI	GTAC	2 cut(s)	225, 525
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	231, 345
DpnII	GATC	2 cut(s)	229, 343
Eco130I	CCWWGG	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	5 cut(s)	37, 109, 351, 578, 630
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	5 cut(s)	33, 105, 347, 574, 626
FbaI	TGATCA	1 cut(s)	229
FokI	GGATG	2 cut(s)	122, 370
FspBI	CTAG	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	326, 599
Hin1II	CATG	5 cut(s)	37, 109, 351, 578, 630
HinfI	GANTC	5 cut(s)	50, 65, 194, 256, 483
HphI	GGTGA	1 cut(s)	149
Hpy188III	TCNNGA	2 cut(s)	47, 308
HpyAV	CCTTC	5 cut(s)	134, 165, 181, 316, 416
HpyCH4III	ACNGT	3 cut(s)	224, 266, 365
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	6 cut(s)	120, 150, 381, 494, 545, 578
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	5 cut(s)	37, 109, 351, 578, 630
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	229, 343
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	9 cut(s)	102, 183, 257, 284, 295, 309, 321, 555, 631
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	2 cut(s)	231, 345
MboI	GATC	2 cut(s)	229, 343
MboII	GAAGA	2 cut(s)	32, 331
MfeI	CAATTG	2 cut(s)	406, 477
MluCI	AATT	8 cut(s)	303, 336, 395, 406, 477, 585, 606, 638
MlyI	GAGTC	2 cut(s)	74, 492
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	4 cut(s)	54, 362, 464, 543
MseI	TTAA	1 cut(s)	465
MspA1I	CMGCKG	1 cut(s)	558
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	2 cut(s)	406, 477
MvaI	CCWGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	229, 343
NlaIII	CATG	5 cut(s)	37, 109, 351, 578, 630
NlaIV	GGNNCC	1 cut(s)	87
NmeAIII	GCCGAG	1 cut(s)	88
NspI	RCATGY	1 cut(s)	578
NspV	TTCGAA	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	50, 194, 256
PleI	GAGTC	2 cut(s)	73, 491
PpsI	GAGTC	2 cut(s)	73, 491
PsiI	TTATAA	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	598
RsaI	GTAC	2 cut(s)	226, 526
RsaNI	GTAC	2 cut(s)	225, 525
SaqAI	TTAA	1 cut(s)	465
Sau3AI	GATC	2 cut(s)	229, 343
Sau96I	GGNCC	1 cut(s)	598
ScaI	AGTACT	1 cut(s)	226
SchI	GAGTC	2 cut(s)	74, 492
ScrFI	CCNGG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	180
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	8 cut(s)	303, 336, 395, 406, 477, 585, 606, 638
SsiI	CCGC	1 cut(s)	558
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	3 cut(s)	224, 266, 365
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	3 cut(s)	180, 317, 486
TasI	AATT	8 cut(s)	303, 336, 395, 406, 477, 585, 606, 638
TatI	WGTACW	2 cut(s)	224, 524
TfiI	GAWTC	3 cut(s)	50, 194, 256
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TspDTI	ATGAA	1 cut(s)	615
XceI	RCATGY	1 cut(s)	578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.