Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009574

Physical Location & Seq

Genomic Coordinates Forward (+)

17578198 .. 17581221

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1198400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTTCTTCTTCCACCTTTGTCTTTGCATTGCTTGTCATATTTTCCATCCTTGTTCTTCAACCAGTCACTGCTGATCCATTAGGCAACCTACTTCCTCCTATCTTCTCTCCAATCTTGGATGATGTGTGTAAAGAAGTGGAATGTGGAAAAGGAATTTGCAAGCCTTCAAGTAATAGCACTTTCTTTTTTGAATGTGAATGTGATCCTGGGTGGAGGCAGACTTCTTCTAACCACACTGATCACTTCAAATTCCTCCCTTGCGTCATTCCCAATTGTAATCTGGATTTTTCCTGCACAAAAGCTCCAGCCCCTATTTCAGACAATGCGAGCAAAGCCAACGAGTCATCAATCTTTAACCCTTGCTTTTGGTCGTATTGTGGAGGCGGCTCGTGCAACAAGACATCAAAATTCACATACAGCTGCAAATGTGCTGACGGTTATTCTAATCTTCTTAATGTCACTACTTTCCCTTGCTTTGAAGAATGTGCAATTGGACTGAACTGTGCAAACCTTGGGATTTCAATGTCGAATAAGTCTACTGCTTCACCACCAGCATCATCTGGCAGTGGTAAGAATCAAGCTAGCTCGATGGTCCAAGTGAACCCTGCTGCATTTGTGATTCTGATGATGTTTGCTGCTATGATTCATTGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

23.5

Weight (kDa)

5.87

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14746 AT4G14746
fragaria_vesca	FvH4_4g00650 FvH4_4g00650 FvH4_4g00650 FvH4_4g00650 FvH4_4g01001
malus_domestica	MD13G1198400.v1.1 MD16G1198500.v1.1
prunus_persica	Prupe.1G020200_v2.0.a1
pyrus_communis	pycom13g17230 pycom16g16740
rosa_chinensis	RchiOBHm_Chr4g0387581
rosa_laevigata	RLG00000010110
rosa_multiflora	Rmu_sc0007248.1_g000007
rosa_roxburghii	Rroxscaffold_5G00334270
rosa_rugosa	Rorug03G0310800
rosa_samantha	Rh4AG016900 Rh4BG011700 Rh4CG018000 Rh4DG012600
rosa_wichuraiana	Rw4G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	539
AciI	CCGC	1 cut(s)	387
AclWI	GGATC	2 cut(s)	71, 200
AcsI	RAATTY	3 cut(s)	156, 251, 410
AgsI	TTSAA	6 cut(s)	62, 171, 194, 250, 482, 525
AjnI	CCWGG	1 cut(s)	208
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AluBI	AGCT	4 cut(s)	305, 423, 584, 588
AluI	AGCT	4 cut(s)	305, 423, 584, 588
AlwI	GGATC	2 cut(s)	71, 200
AlwNI	CAGNNNCTG	1 cut(s)	71
ApeKI	GCWGC	3 cut(s)	423, 611, 638
ApoI	RAATTY	3 cut(s)	156, 251, 410
AspS9I	GGNCC	1 cut(s)	595
AsuHPI	GGTGA	1 cut(s)	540
AsuNHI	GCTAGC	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	595
BauI	CACGAG	1 cut(s)	391
BbvI	GCAGC	3 cut(s)	410, 598, 625
BccI	CCATC	2 cut(s)	56, 586
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	1 cut(s)	241
BfaI	CTAG	1 cut(s)	585
BisI	GCNGC	4 cut(s)	388, 424, 612, 639
BlsI	GCNGC	4 cut(s)	389, 425, 613, 640
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	595
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	566
BmtI	GCTAGC	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	209, 514
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	209, 514
BseGI	GGATG	2 cut(s)	48, 127
BseMI	GCAATG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	410, 598, 625
BsgI	GTGCAG	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	76, 205, 241
BspACI	CCGC	1 cut(s)	387
BspOI	GCTAGC	1 cut(s)	588
BspPI	GGATC	2 cut(s)	71, 200
BsrDI	GCAATG	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	209, 514
BssMI	GATC	3 cut(s)	76, 205, 241
BssSI	CACGAG	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	514
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	440, 506
BstC8I	GCNNGC	3 cut(s)	164, 331, 586
BstF5I	GGATG	2 cut(s)	48, 127
BstKTI	GATC	3 cut(s)	79, 208, 244
BstMBI	GATC	3 cut(s)	76, 205, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 393
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstV1I	GCAGC	3 cut(s)	410, 598, 625
BtsCI	GGATG	2 cut(s)	48, 127
BtsI	GCAGTG	2 cut(s)	69, 574
BtsIMutI	CAGTG	3 cut(s)	69, 237, 574
Cac8I	GCNNGC	3 cut(s)	164, 331, 586
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	595
CseI	GACGC	1 cut(s)	253
CviJI	RGCY	9 cut(s)	5, 166, 305, 311, 338, 390, 423, 584, 588
CviKI_1	RGCY	9 cut(s)	5, 166, 305, 311, 338, 390, 423, 584, 588
DpnI	GATC	3 cut(s)	78, 207, 243
DpnII	GATC	3 cut(s)	76, 205, 241
Eco130I	CCWWGG	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	514
FaiI	YATR	3 cut(s)	41, 418, 644
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	4 cut(s)	388, 424, 612, 639
FokI	GGATG	2 cut(s)	35, 134
Fsp4HI	GCNGC	4 cut(s)	388, 424, 612, 639
FspBI	CTAG	1 cut(s)	585
GluI	GCNGC	4 cut(s)	388, 424, 612, 639
GsuI	CTGGAG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	253
HinfI	GANTC	4 cut(s)	344, 577, 622, 646
HphI	GGTGA	1 cut(s)	540
Hpy166II	GTNNAC	2 cut(s)	540, 604
Hpy188I	TCNGA	2 cut(s)	322, 627
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	2 cut(s)	540, 604
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	2 cut(s)	440, 506
HpyCH4V	TGCA	8 cut(s)	29, 162, 297, 396, 426, 491, 509, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 393
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	76, 205, 241
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	9 cut(s)	78, 195, 222, 269, 307, 321, 549, 567, 621
Lsp1109I	GCAGC	3 cut(s)	410, 598, 625
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	67, 460
MalI	GATC	3 cut(s)	78, 207, 243
MboI	GATC	3 cut(s)	76, 205, 241
MboII	GAAGA	6 cut(s)	3, 50, 97, 219, 443, 494
MfeI	CAATTG	2 cut(s)	274, 492
MluCI	AATT	5 cut(s)	156, 251, 274, 410, 492
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	4 cut(s)	108, 210, 266, 377
MseI	TTAA	2 cut(s)	357, 456
MspA1I	CMGCKG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	2 cut(s)	274, 492
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	335, 393
NdeII	GATC	3 cut(s)	76, 205, 241
NheI	GCTAGC	1 cut(s)	584
NmuCI	GTSAC	2 cut(s)	67, 460
PfeI	GAWTC	3 cut(s)	577, 622, 646
PkrI	GCNGC	4 cut(s)	389, 425, 613, 640
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	595
PstNI	CAGNNNCTG	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	357, 456
SatI	GCNGC	4 cut(s)	388, 424, 612, 639
Sau3AI	GATC	3 cut(s)	76, 205, 241
Sau96I	GGNCC	1 cut(s)	595
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	7 cut(s)	20, 93, 307, 425, 516, 586, 590
SfaNI	GCATC	1 cut(s)	566
SinI	GGWCC	1 cut(s)	595
Sse9I	AATT	5 cut(s)	156, 251, 274, 410, 492
SsiI	CCGC	1 cut(s)	387
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	2 cut(s)	440, 506
TaqI	TCGA	2 cut(s)	530, 590
TasI	AATT	5 cut(s)	156, 251, 274, 410, 492
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	3 cut(s)	577, 622, 646
Tru1I	TTAA	2 cut(s)	357, 456
Tru9I	TTAA	2 cut(s)	357, 456
TscAI	CASTG	3 cut(s)	76, 244, 574
TseFI	GTSAC	2 cut(s)	67, 460
TseI	GCWGC	3 cut(s)	423, 611, 638
Tsp45I	GTSAC	2 cut(s)	67, 460
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	3 cut(s)	76, 244, 574
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	3 cut(s)	156, 251, 410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	539
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.