Rh4CG018000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009574
Physical Location & Seq
Forward (+)
3666429 .. 3669065
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG018000.1

Sequence Viewer

Length: 486 bp
ATGGCTTTCCCCATTATCTGTGTTTTTCTTGCCATATTTCTTCCTCTTGAATCTGTCACTGCCGAGTCATTAGGCGACATATTGGCTCCTGTTATCTCTCCAGTCATGGTTGATGTTTGCAAAGGCATAGAATGTGGTAAAGGGACATGCAAGCCTTCAACCAGTGGCACTTTCTTTTTCGAATGTGAATGTGATTCTGGGTGGAATCGGACCACTATTGAGACTAGTGATCACTTCAAGTTTCTACCTTGTGTGATTCCCAATTGTAACCTGGATTACTCCTGTGCAAAAGCACCAGCCCCAATTTCAGATAAATCGAACAAGACCAACACATCAATCTTTGATCCTTGCTATTGGATGGATTGTGGAGGTGGAACTTGCAACAAGACATCAAAATTGGCGTACAAATGTGAATGTGGAGAAGGTTATTATAACCTGCTCAATGTGACTACCTTCCCTTGCTTTAAAGAATGTAAGAGCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.56

Weight (kDa)

4.95

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
Acc36I ACCTGC 1 cut(s) 444
AclWI GGATC 1 cut(s) 338
AfaI GTAC 1 cut(s) 404
AgsI TTSAA 3 cut(s) 50, 159, 238
AhlI ACTAGT 1 cut(s) 224
AjnI CCWGG 1 cut(s) 270
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 210
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 482
BccI CCATC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 272
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 215
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 444
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 272
BpmI CTGGAG 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 180
Bse1I ACTGG 2 cut(s) 101, 162
BseBI CCWGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 363
BseNI ACTGG 2 cut(s) 101, 162
BsiHKAI GWGCWC 1 cut(s) 482
BslFI GGGAC 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 157
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 2 cut(s) 229, 343
BspLI GGNNCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 180
BsrI ACTGG 2 cut(s) 101, 162
BssMI GATC 2 cut(s) 229, 343
Bst2UI CCWGG 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 152
BstF5I GGATG 1 cut(s) 363
BstKTI GATC 2 cut(s) 232, 346
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 2 cut(s) 229, 343
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 363
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 169
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 403
CviAII CATG 2 cut(s) 106, 147
CviJI RGCY 4 cut(s) 5, 86, 154, 299
CviKI_1 RGCY 4 cut(s) 5, 86, 154, 299
CviQI GTAC 1 cut(s) 403
DpnI GATC 2 cut(s) 231, 345
DpnII GATC 2 cut(s) 229, 343
DraI TTTAAA 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 270
FaeI CATG 2 cut(s) 109, 150
FaiI YATR 6 cut(s) 35, 80, 107, 128, 148, 432
FaqI GGGAC 1 cut(s) 157
FatI CATG 2 cut(s) 105, 146
FbaI TGATCA 1 cut(s) 229
FokI GGATG 1 cut(s) 370
FspBI CTAG 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 84
Hin1II CATG 2 cut(s) 109, 150
HinfI GANTC 5 cut(s) 50, 65, 194, 205, 256
Hpy188I TCNGA 2 cut(s) 210, 310
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 165, 416, 463
HpyCH4V TGCA 4 cut(s) 120, 150, 287, 381
Hsp92II CATG 2 cut(s) 109, 150
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 2 cut(s) 229, 343
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 9 cut(s) 102, 114, 175, 183, 257, 284, 295, 309, 449
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 3 cut(s) 55, 266, 445
MalI GATC 2 cut(s) 231, 345
MboI GATC 2 cut(s) 229, 343
MboII GAAGA 1 cut(s) 32
MfeI CAATTG 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 3 cut(s) 262, 303, 395
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 2 cut(s) 54, 362
MseI TTAA 1 cut(s) 465
MspR9I CCNGG 1 cut(s) 272
MunI CAATTG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 272
NdeII GATC 2 cut(s) 229, 343
NlaIII CATG 2 cut(s) 109, 150
NlaIV GGNNCC 1 cut(s) 87
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 2 cut(s) 55, 445
NspI RCATGY 1 cut(s) 150
NspV TTCGAA 1 cut(s) 180
PfeI GAWTC 4 cut(s) 50, 194, 205, 256
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PsiI TTATAA 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 210
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 1 cut(s) 465
Sau3AI GATC 2 cut(s) 229, 343
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 482
SetI ASST 7 cut(s) 250, 273, 373, 427, 438, 455, 485
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 210
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 3 cut(s) 262, 303, 395
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 270
TaqI TCGA 2 cut(s) 180, 317
TasI AATT 3 cut(s) 262, 303, 395
TfiI GAWTC 4 cut(s) 50, 194, 205, 256
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 2 cut(s) 64, 169
TseFI GTSAC 2 cut(s) 55, 445
Tsp45I GTSAC 2 cut(s) 55, 445
TspRI CASTG 2 cut(s) 64, 169
VpaK11BI GGWCC 1 cut(s) 210
XceI RCATGY 1 cut(s) 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.