Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009574

Physical Location & Seq

Genomic Coordinates Forward (+)

17862352 .. 17865106

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1198500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTTCTGCTTCCACCTTTGTCTTTGCATTGCTTGCCATATTTTCCATCGTTGTGGCTATTCGACCAGTCACTGCTGATCCACTAGGCAACCTACTGGCTCCTATCTTCTCTCCAATATTGGATGATGTGTGCAAAGAAGTGGAATGTGGAAAAGGGAATTGCAAGCCATCAAGTAATAGCACTTTCTTTTTTGAATGTGATTGTGAGCCTGGTTGGAAGCAGACTTCTAACAACACTCATCACTTCAAGTTCCTCCCTTGCGTCATTCCCAATTGTAACCTGGATTTTTCCTGCACGAAAGCTCCAGCCCCTGTTTCAGATCAAGCGAGCAAAGCCAATGAGTCATCAATCTTTGATCCTTGCTTCTGGGCGTATTGTGGAGGCGGCTCGTGCAACAAGACATCAAAATTCACATACAACTGCAAATGTGATGAGGGTTATGATAATCTTCTCAATGTCACTACCCTTCCTTGCTTGGAAGAATGTGCAATTGGAATGACCTGTGCAAACCTTGGGATTTCCATGTCGAATAAATCTACTGCTTCGCCACCGGCATTGTCTGACAACGGTAAGAATCAAGGTAGCTCGATGGTCCAAGTGAACTCTGCTGCATTGGTGATCCTCATGATGTTTGCTGCTATGGTTCATTGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

23.48

Weight (kDa)

5.3

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14746 AT4G14746
fragaria_vesca	FvH4_4g00650 FvH4_4g00650 FvH4_4g00650 FvH4_4g00650 FvH4_4g01001
malus_domestica	MD13G1198400.v1.1 MD16G1198500.v1.1
prunus_persica	Prupe.1G020200_v2.0.a1
pyrus_communis	pycom13g17230 pycom16g16740
rosa_chinensis	RchiOBHm_Chr4g0387581
rosa_laevigata	RLG00000010110
rosa_multiflora	Rmu_sc0007248.1_g000007
rosa_roxburghii	Rroxscaffold_5G00334270
rosa_rugosa	Rorug03G0310800
rosa_samantha	Rh4AG016900 Rh4BG011700 Rh4CG018000 Rh4DG012600
rosa_wichuraiana	Rw4G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	387
AclWI	GGATC	3 cut(s)	74, 353, 616
AcsI	RAATTY	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	197, 250
AjnI	CCWGG	2 cut(s)	211, 282
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AluBI	AGCT	2 cut(s)	305, 588
AluI	AGCT	2 cut(s)	305, 588
AlwI	GGATC	3 cut(s)	74, 353, 616
AlwNI	CAGNNNCTG	2 cut(s)	74, 314
ApeKI	GCWGC	2 cut(s)	611, 638
ApoI	RAATTY	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	595
AsuHPI	GGTGA	1 cut(s)	631
AvaII	GGWCC	1 cut(s)	595
BauI	CACGAG	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	598, 625
BccI	CCATC	3 cut(s)	56, 178, 586
BciT130I	CCWGG	2 cut(s)	213, 284
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	3 cut(s)	388, 612, 639
BlsI	GCNGC	3 cut(s)	389, 613, 640
Bme1390I	CCNGG	2 cut(s)	213, 284
Bme18I	GGWCC	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	595
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	213, 284
BpmI	CTGGAG	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	68, 102
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	213, 284
BseDI	CCNNGG	1 cut(s)	514
BseGI	GGATG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	68, 102
BseXI	GCAGC	2 cut(s)	598, 625
BsgI	GTGCAG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	554
Bsp143I	GATC	4 cut(s)	79, 322, 358, 621
BspACI	CCGC	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	3 cut(s)	74, 353, 616
BsrDI	GCAATG	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	553
BsrI	ACTGG	2 cut(s)	68, 102
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	4 cut(s)	79, 322, 358, 621
BssSI	CACGAG	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	514
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	213, 284
Bst4CI	ACNGT	1 cut(s)	572
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	3 cut(s)	36, 167, 331
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	4 cut(s)	82, 325, 361, 624
BstMBI	GATC	4 cut(s)	79, 322, 358, 621
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 335, 393
BstNI	CCWGG	2 cut(s)	213, 284
BstSCI	CCNGG	2 cut(s)	211, 282
BstV1I	GCAGC	2 cut(s)	598, 625
BstXI	CCANNNNNNTGG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	3 cut(s)	36, 167, 331
CaiI	CAGNNNCTG	2 cut(s)	74, 314
CciI	TCATGA	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	595
CseI	GACGC	1 cut(s)	253
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	2 cut(s)	526, 628
DpnI	GATC	4 cut(s)	81, 324, 360, 623
DpnII	GATC	4 cut(s)	79, 322, 358, 621
Eco130I	CCWWGG	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	595
EcoRII	CCWGG	2 cut(s)	211, 282
EcoT14I	CCWWGG	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	514
FaeI	CATG	2 cut(s)	529, 631
FaiI	YATR	6 cut(s)	41, 418, 444, 527, 629, 644
FatI	CATG	2 cut(s)	525, 627
Fnu4HI	GCNGC	3 cut(s)	388, 612, 639
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	3 cut(s)	388, 612, 639
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	3 cut(s)	388, 612, 639
GsuI	CTGGAG	1 cut(s)	291
HapII	CCGG	1 cut(s)	554
HgaI	GACGC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	529, 631
HinfI	GANTC	2 cut(s)	344, 577
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	2 cut(s)	322, 565
Hpy188III	TCNNGA	1 cut(s)	628
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	1 cut(s)	479
HpyCH4III	ACNGT	1 cut(s)	572
HpyCH4V	TGCA	9 cut(s)	29, 135, 165, 297, 396, 426, 491, 509, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 335, 393
Hsp92II	CATG	2 cut(s)	529, 631
Kzo9I	GATC	4 cut(s)	79, 322, 358, 621
LmnI	GCTCC	2 cut(s)	106, 310
Lsp1109I	GCAGC	2 cut(s)	598, 625
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	3 cut(s)	70, 278, 460
MalI	GATC	4 cut(s)	81, 324, 360, 623
MboI	GATC	4 cut(s)	79, 322, 358, 621
MboII	GAAGA	3 cut(s)	100, 443, 494
MfeI	CAATTG	2 cut(s)	274, 492
MluCI	AATT	4 cut(s)	160, 274, 410, 492
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	266, 377, 430, 635
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	2 cut(s)	213, 284
MunI	CAATTG	2 cut(s)	274, 492
MvaI	CCWGG	2 cut(s)	213, 284
MwoI	GCNNNNNNNGC	3 cut(s)	35, 335, 393
NdeII	GATC	4 cut(s)	79, 322, 358, 621
NlaIII	CATG	2 cut(s)	529, 631
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	2 cut(s)	70, 460
PagI	TCATGA	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	577
PkrI	GCNGC	3 cut(s)	389, 613, 640
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	211, 282
PspGI	CCWGG	2 cut(s)	211, 282
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	595
PstNI	CAGNNNCTG	2 cut(s)	74, 314
RseI	CAYNNNNRTG	1 cut(s)	53
SatI	GCNGC	3 cut(s)	388, 612, 639
Sau3AI	GATC	4 cut(s)	79, 322, 358, 621
Sau96I	GGNCC	1 cut(s)	595
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	213, 284
SetI	ASST	8 cut(s)	20, 96, 285, 307, 506, 516, 586, 590
SinI	GGWCC	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	4 cut(s)	160, 274, 410, 492
SsiI	CCGC	1 cut(s)	387
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	211, 282
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	1 cut(s)	572
TaqI	TCGA	3 cut(s)	64, 530, 590
TasI	AATT	4 cut(s)	160, 274, 410, 492
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	577
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	2 cut(s)	70, 460
TseI	GCWGC	2 cut(s)	611, 638
Tsp45I	GTSAC	2 cut(s)	70, 460
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.