Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0009574

Physical Location & Seq

Genomic Coordinates Forward (+)

2104359 .. 2106305

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G001070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTTTCCCCTTTATCTGTGTTTTTCTTGCCATATTTCTTCCTCCTGAATCTGTCACTGCCGAGTCATTAGGCGACATATTGGCTCCTGTTATCTCTCCAGTCATGGTTGATGTTTGCAAAGGCATAGAATGTGGTAAAGGGACATGCAAGCCTTCAACCAGTGGCACTTTCTTTTTCGAATGTGAATGTGATTCTGGGTGGAATCGGACCACTATTGAGAATAGTGATCACTTCAAGTTTCTACCTTGTGTGATTCCCAATTGTAAACTGGATTACTCCTGTGCAAAAGCACCAGCCCCAATTTCAGATAAATCGAACAAGACCAACACATCAATCTTTGATCCTTGCTATTGGATGGATTGTGGAGGTGGAACTTGCAACAAGACATCAAAATTGGCGTACAAATGTGAATGTGGAGAAGGTTATTATAACCTGCTCAATGTGACTACCTTCCCTTGCTTTAAAGAATGTGCAATTGGAATCGATTGTGCAAACCTTGGGATTTCGGTGTCAAATAAGTCTAGTACTAGTCCTCCACCACCTGCATTGGCTGACAATAGTAGCTCGACTACACATGCAAACTCTATTACATTGGTGATCCTCATAATGTTTGTTGTTATGGTTCATGGGATATCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

22.94

Weight (kDa)

5.12

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14746 AT4G14746
fragaria_vesca	FvH4_4g00650 FvH4_4g00650 FvH4_4g00650 FvH4_4g00650 FvH4_4g01001
malus_domestica	MD13G1198400.v1.1 MD16G1198500.v1.1
prunus_persica	Prupe.1G020200_v2.0.a1
pyrus_communis	pycom13g17230 pycom16g16740
rosa_chinensis	RchiOBHm_Chr4g0387581
rosa_laevigata	RLG00000010110
rosa_multiflora	Rmu_sc0007248.1_g000007
rosa_roxburghii	Rroxscaffold_5G00334270
rosa_rugosa	Rorug03G0310800
rosa_samantha	Rh4AG016900 Rh4BG011700 Rh4CG018000 Rh4DG012600
rosa_wichuraiana	Rw4G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	2 cut(s)	444, 553
AclWI	GGATC	2 cut(s)	338, 595
AfaI	GTAC	2 cut(s)	404, 529
AgsI	TTSAA	2 cut(s)	159, 238
AhlI	ACTAGT	1 cut(s)	530
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	1 cut(s)	567
AluI	AGCT	1 cut(s)	567
AlwI	GGATC	2 cut(s)	338, 595
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	610
AsuII	TTCGAA	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	210
BccI	CCATC	1 cut(s)	352
BclI	TGATCA	1 cut(s)	229
BcuI	ACTAGT	1 cut(s)	530
BfaI	CTAG	2 cut(s)	525, 531
BfuAI	ACCTGC	2 cut(s)	444, 553
BmcAI	AGTACT	1 cut(s)	529
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	180
Bsa29I	ATCGAT	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	520, 550
Bse1I	ACTGG	3 cut(s)	101, 162, 276
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	1 cut(s)	363
BseNI	ACTGG	3 cut(s)	101, 162, 276
BshVI	ATCGAT	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	229, 343, 600
BspDI	ATCGAT	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	87
BspMI	ACCTGC	2 cut(s)	444, 553
BspPI	GGATC	2 cut(s)	338, 595
BspT104I	TTCGAA	1 cut(s)	180
BsrI	ACTGG	3 cut(s)	101, 162, 276
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	3 cut(s)	229, 343, 600
BssT1I	CCWWGG	1 cut(s)	499
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	363
BstKTI	GATC	3 cut(s)	232, 346, 603
BstMBI	GATC	3 cut(s)	229, 343, 600
BstNSI	RCATGY	2 cut(s)	150, 581
Bsu15I	ATCGAT	1 cut(s)	486
BsuTUI	ATCGAT	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	363
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 169
BveI	ACCTGC	2 cut(s)	444, 553
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	210
ClaI	ATCGAT	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	403, 528
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	4 cut(s)	106, 147, 578, 629
CviJI	RGCY	6 cut(s)	5, 86, 154, 299, 554, 567
CviKI_1	RGCY	6 cut(s)	5, 86, 154, 299, 554, 567
CviQI	GTAC	2 cut(s)	403, 528
DpnI	GATC	3 cut(s)	231, 345, 602
DpnII	GATC	3 cut(s)	229, 343, 600
DraI	TTTAAA	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	499
Eco32I	GATATC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	636
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	4 cut(s)	109, 150, 581, 632
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	4 cut(s)	105, 146, 577, 628
FbaI	TGATCA	1 cut(s)	229
FokI	GGATG	1 cut(s)	370
FspBI	CTAG	2 cut(s)	525, 531
GsuI	CTGGAG	1 cut(s)	84
Hin1II	CATG	4 cut(s)	109, 150, 581, 632
HinfI	GANTC	6 cut(s)	50, 65, 194, 205, 256, 483
HphI	GGTGA	1 cut(s)	610
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	2 cut(s)	210, 310
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	3 cut(s)	165, 416, 463
HpyCH4V	TGCA	8 cut(s)	120, 150, 287, 381, 476, 494, 548, 581
Hsp92II	CATG	4 cut(s)	109, 150, 581, 632
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	229, 343, 600
LmnI	GCTCC	1 cut(s)	91
MaeI	CTAG	2 cut(s)	525, 531
MaeIII	GTNAC	2 cut(s)	55, 445
MalI	GATC	3 cut(s)	231, 345, 602
MboI	GATC	3 cut(s)	229, 343, 600
MboII	GAAGA	1 cut(s)	32
MfeI	CAATTG	2 cut(s)	262, 477
MluCI	AATT	5 cut(s)	262, 303, 395, 477, 640
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	4 cut(s)	54, 362, 546, 614
MseI	TTAA	1 cut(s)	465
MunI	CAATTG	2 cut(s)	262, 477
NdeII	GATC	3 cut(s)	229, 343, 600
NlaIII	CATG	4 cut(s)	109, 150, 581, 632
NlaIV	GGNNCC	1 cut(s)	87
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	55, 445
NspI	RCATGY	2 cut(s)	150, 581
NspV	TTCGAA	1 cut(s)	180
PaqCI	CACCTGC	1 cut(s)	553
PfeI	GAWTC	5 cut(s)	50, 194, 205, 256, 483
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PsiI	TTATAA	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	210
RsaI	GTAC	2 cut(s)	404, 529
RsaNI	GTAC	2 cut(s)	403, 528
SaqAI	TTAA	1 cut(s)	465
Sau3AI	GATC	3 cut(s)	229, 343, 600
Sau96I	GGNCC	1 cut(s)	210
ScaI	AGTACT	1 cut(s)	529
SchI	GAGTC	1 cut(s)	74
SetI	ASST	8 cut(s)	250, 373, 427, 438, 455, 501, 547, 569
SfuI	TTCGAA	1 cut(s)	180
SinI	GGWCC	1 cut(s)	210
SpeI	ACTAGT	1 cut(s)	530
Sse9I	AATT	5 cut(s)	262, 303, 395, 477, 640
SspMI	CTAG	2 cut(s)	525, 531
StyI	CCWWGG	1 cut(s)	499
TaqI	TCGA	4 cut(s)	180, 317, 486, 569
TasI	AATT	5 cut(s)	262, 303, 395, 477, 640
TatI	WGTACW	1 cut(s)	527
TfiI	GAWTC	5 cut(s)	50, 194, 205, 256, 483
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	2 cut(s)	64, 169
TseFI	GTSAC	2 cut(s)	55, 445
Tsp45I	GTSAC	2 cut(s)	55, 445
TspDTI	ATGAA	1 cut(s)	617
TspRI	CASTG	2 cut(s)	64, 169
VpaK11BI	GGWCC	1 cut(s)	210
XceI	RCATGY	2 cut(s)	150, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XspI	CTAG	2 cut(s)	525, 531
ZrmI	AGTACT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.