Rroxscaffold_5G00334270

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
1587206 .. 1591280
4075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334270.1

Sequence Viewer

Length: 636 bp
ATGGCTTTCCCCATTATCTGTGTTTTTCTTGCCATGTTTCTTCCTCTTGAATCTGTCACTGCCGAGTCATTAGGCGACATATTGGCTCCTGTTATCTCTCCAGTCATGGTTGATGTTTGCAAAGGCATAGAATGTGGTAAAGGGACATGCAAGCCTTCAACCAGTAGCACTTTCTTTTTCGAATGTGAATGTGATCCTGGGTGGAATCGGACCACTATTGAGAATAGTGATCACTTCAAGTTTCTACCTTGTGTGATTCCCAATTGTAACCTGGATTACTCCTGTGCAAAAGCACCAGCCCCAATTTCAGATAAATCGAACAAGACCAACACATCAATCTTTGATCCTTGCTATTGGATGGATTGTGGAGGTGGAACTTGCAACAAGACATCAAAATTGGCGTACAAATGTGAATGTGGAGAAGGTTATTATAACCTGCTCAATGTGACTACCTTCCCTTGCTTTAAAGAATGTGCAATTGGAATCAATTGTGCAAACCTTGGGATTTCGGTGTCAAATAAGTCTACTAGTCCTGCACCACCTGCATTGGCTGACAATAGTAGCTCGACTACACATGCAAACTCTATTACATTGGTGATCCTCATAATGTTTGTTGTTATGGTTCATGGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.65

Weight (kDa)

5.11

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AarI CACCTGC 1 cut(s) 550
Acc36I ACCTGC 2 cut(s) 444, 550
AccI GTMKAC 1 cut(s) 524
AclWI GGATC 3 cut(s) 188, 338, 592
AfaI GTAC 1 cut(s) 404
AgsI TTSAA 3 cut(s) 50, 159, 238
AhlI ACTAGT 1 cut(s) 527
AjnI CCWGG 2 cut(s) 196, 270
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AluBI AGCT 1 cut(s) 564
AluI AGCT 1 cut(s) 564
AlwI GGATC 3 cut(s) 188, 338, 592
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 607
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 210
BccI CCATC 1 cut(s) 352
BciT130I CCWGG 2 cut(s) 198, 272
BclI TGATCA 1 cut(s) 229
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 1 cut(s) 528
BfuAI ACCTGC 2 cut(s) 444, 550
Bme1390I CCNGG 2 cut(s) 198, 272
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 2 cut(s) 198, 272
BpmI CTGGAG 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 197, 499
Bse1I ACTGG 2 cut(s) 101, 162
BseBI CCWGG 2 cut(s) 198, 272
BseDI CCNNGG 2 cut(s) 197, 499
BseGI GGATG 1 cut(s) 363
BseNI ACTGG 2 cut(s) 101, 162
BsgI GTGCAG 1 cut(s) 519
BslFI GGGAC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 157
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 4 cut(s) 193, 229, 343, 597
BspLI GGNNCC 1 cut(s) 87
BspMI ACCTGC 2 cut(s) 444, 550
BspPI GGATC 3 cut(s) 188, 338, 592
BspT104I TTCGAA 1 cut(s) 180
BsrI ACTGG 2 cut(s) 101, 162
BssECI CCNNGG 2 cut(s) 197, 499
BssMI GATC 4 cut(s) 193, 229, 343, 597
BssT1I CCWWGG 1 cut(s) 499
Bst2UI CCWGG 2 cut(s) 198, 272
BstAPI GCANNNNNTGC 1 cut(s) 542
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 152
BstF5I GGATG 1 cut(s) 363
BstKTI GATC 4 cut(s) 196, 232, 346, 600
BstMBI GATC 4 cut(s) 193, 229, 343, 597
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstNI CCWGG 2 cut(s) 198, 272
BstNSI RCATGY 2 cut(s) 150, 578
BstSCI CCNGG 2 cut(s) 196, 270
BtsCI GGATG 1 cut(s) 363
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
BveI ACCTGC 2 cut(s) 444, 550
Cac8I GCNNGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 528, 563
CviAII CATG 5 cut(s) 34, 106, 147, 575, 626
CviJI RGCY 6 cut(s) 5, 86, 154, 299, 551, 564
CviKI_1 RGCY 6 cut(s) 5, 86, 154, 299, 551, 564
CviQI GTAC 1 cut(s) 403
DpnI GATC 4 cut(s) 195, 231, 345, 599
DpnII GATC 4 cut(s) 193, 229, 343, 597
DraI TTTAAA 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 210
EcoRII CCWGG 2 cut(s) 196, 270
EcoT14I CCWWGG 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 5 cut(s) 37, 109, 150, 578, 629
FaqI GGGAC 1 cut(s) 157
FatI CATG 5 cut(s) 33, 105, 146, 574, 625
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 524
FokI GGATG 1 cut(s) 370
FspBI CTAG 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 84
Hin1II CATG 5 cut(s) 37, 109, 150, 578, 629
HinfI GANTC 5 cut(s) 50, 65, 205, 256, 483
HphI GGTGA 1 cut(s) 607
Hpy166II GTNNAC 1 cut(s) 525
Hpy188I TCNGA 2 cut(s) 210, 310
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 525
HpyAV CCTTC 3 cut(s) 165, 416, 463
HpyCH4V TGCA 9 cut(s) 120, 150, 287, 381, 476, 494, 536, 545, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
Hsp92II CATG 5 cut(s) 37, 109, 150, 578, 629
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 4 cut(s) 193, 229, 343, 597
LmnI GCTCC 1 cut(s) 91
MaeI CTAG 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 55, 266, 445
MalI GATC 4 cut(s) 195, 231, 345, 599
MboI GATC 4 cut(s) 193, 229, 343, 597
MboII GAAGA 1 cut(s) 32
MfeI CAATTG 3 cut(s) 262, 477, 487
MluCI AATT 5 cut(s) 262, 303, 395, 477, 487
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 3 cut(s) 54, 362, 611
MseI TTAA 1 cut(s) 465
MspR9I CCNGG 2 cut(s) 198, 272
MunI CAATTG 3 cut(s) 262, 477, 487
MvaI CCWGG 2 cut(s) 198, 272
MwoI GCNNNNNNNGC 1 cut(s) 542
NdeII GATC 4 cut(s) 193, 229, 343, 597
NlaIII CATG 5 cut(s) 37, 109, 150, 578, 629
NlaIV GGNNCC 1 cut(s) 87
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 2 cut(s) 55, 445
NspI RCATGY 2 cut(s) 150, 578
NspV TTCGAA 1 cut(s) 180
PaqCI CACCTGC 1 cut(s) 550
PfeI GAWTC 4 cut(s) 50, 205, 256, 483
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PsiI TTATAA 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 196, 270
PspGI CCWGG 2 cut(s) 196, 270
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 210
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 1 cut(s) 465
Sau3AI GATC 4 cut(s) 193, 229, 343, 597
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 198, 272
SetI ASST 9 cut(s) 250, 273, 373, 427, 438, 455, 501, 544, 566
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 210
SpeI ACTAGT 1 cut(s) 527
Sse9I AATT 5 cut(s) 262, 303, 395, 477, 487
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 2 cut(s) 196, 270
StyI CCWWGG 1 cut(s) 499
TaqI TCGA 3 cut(s) 180, 317, 566
TasI AATT 5 cut(s) 262, 303, 395, 477, 487
TfiI GAWTC 4 cut(s) 50, 205, 256, 483
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 2 cut(s) 55, 445
Tsp45I GTSAC 2 cut(s) 55, 445
TspDTI ATGAA 1 cut(s) 614
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 210
XceI RCATGY 2 cut(s) 150, 578
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 524
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.