Rh4BG011700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0009574
Physical Location & Seq
Forward (+)
1660429 .. 1663124
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG011700.1

Sequence Viewer

Length: 495 bp
ATGGCTTTCCCCATTATCTGTGTTTTTCTTGCCATGTTTCTTCCTCTTGAATCTGTCACTGCCGAGTCATTAGGCGACGTATTGGCTCCTGTTATCTCTCCAATCATGGTTGATGTTTGCAAAGGGATAGAATGTGGTAAAGGGACATGCAAGCCTTCAACCAGTAGCACTTTCTTTTTCGAATGTGAATGTGATTCTGGGTGGAATCGGACCACTATTGAGAATAGTGATCACTTCAAGTTTCTACCTTGTGTGATTCCCAATTGTAACCTGGATTACTCCTGTGCAAAAGCACCAGCCCCAATTTCAGATAAATCGAACAAGACCAACACATCAATCTTTGATCCTTGCCATTGGATGGATTGTGGAGGTGGAACTTGCAACAAGACATCAAAATTGGCATACAAATGTGAATGTGGAGAAGGTTATTATAACCTGCTCAATGTGACTACCTTCCCTTGCTTTAAAGAATGTAAGAGCACCAAAAGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.96

Weight (kDa)

5.35

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
Acc36I ACCTGC 1 cut(s) 444
AccB7I CCANNNNNTGG 1 cut(s) 358
AclWI GGATC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 3 cut(s) 50, 159, 238
AjnI CCWGG 1 cut(s) 270
Alw21I GWGCWC 1 cut(s) 482
AlwI GGATC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 210
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 482
BccI CCATC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 272
BclI TGATCA 1 cut(s) 229
BfuAI ACCTGC 1 cut(s) 444
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 358
BseNI ACTGG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 482
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 157
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 2 cut(s) 229, 343
BspLI GGNNCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 180
BsrI ACTGG 1 cut(s) 162
BssMI GATC 2 cut(s) 229, 343
Bst2UI CCWGG 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 152
BstF5I GGATG 1 cut(s) 363
BstKTI GATC 2 cut(s) 232, 346
BstMBI GATC 2 cut(s) 229, 343
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 363
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 210
CviAII CATG 3 cut(s) 34, 106, 147
CviJI RGCY 4 cut(s) 5, 86, 154, 299
CviKI_1 RGCY 4 cut(s) 5, 86, 154, 299
DpnI GATC 2 cut(s) 231, 345
DpnII GATC 2 cut(s) 229, 343
DraI TTTAAA 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 270
FaeI CATG 3 cut(s) 37, 109, 150
FaiI YATR 5 cut(s) 35, 107, 148, 403, 432
FaqI GGGAC 1 cut(s) 157
FatI CATG 3 cut(s) 33, 105, 146
FbaI TGATCA 1 cut(s) 229
FokI GGATG 1 cut(s) 370
Hin1II CATG 3 cut(s) 37, 109, 150
HinfI GANTC 5 cut(s) 50, 65, 194, 205, 256
Hpy188I TCNGA 2 cut(s) 210, 310
Hpy188III TCNNGA 1 cut(s) 47
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 165, 416, 463
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 4 cut(s) 120, 150, 287, 381
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 3 cut(s) 37, 109, 150
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 2 cut(s) 229, 343
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 8 cut(s) 102, 175, 183, 257, 284, 295, 309, 449
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 3 cut(s) 55, 266, 445
MalI GATC 2 cut(s) 231, 345
MboI GATC 2 cut(s) 229, 343
MboII GAAGA 1 cut(s) 32
MfeI CAATTG 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 3 cut(s) 262, 303, 395
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 2 cut(s) 54, 362
MseI TTAA 2 cut(s) 465, 493
MslI CAYNNNNRTG 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 272
MunI CAATTG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 272
NdeII GATC 2 cut(s) 229, 343
NlaIII CATG 3 cut(s) 37, 109, 150
NlaIV GGNNCC 1 cut(s) 87
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 2 cut(s) 55, 445
NspI RCATGY 1 cut(s) 150
NspV TTCGAA 1 cut(s) 180
PfeI GAWTC 4 cut(s) 50, 194, 205, 256
PflMI CCANNNNNTGG 1 cut(s) 358
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PsiI TTATAA 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 406
SaqAI TTAA 2 cut(s) 465, 493
Sau3AI GATC 2 cut(s) 229, 343
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 482
SetI ASST 7 cut(s) 81, 250, 273, 373, 427, 438, 455
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 406
Sse9I AATT 3 cut(s) 262, 303, 395
StyD4I CCNGG 1 cut(s) 270
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 180, 317
TasI AATT 3 cut(s) 262, 303, 395
TfiI GAWTC 4 cut(s) 50, 194, 205, 256
Tru1I TTAA 2 cut(s) 465, 493
Tru9I TTAA 2 cut(s) 465, 493
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 2 cut(s) 55, 445
Tsp45I GTSAC 2 cut(s) 55, 445
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 210
XceI RCATGY 1 cut(s) 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.