Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009574

Physical Location & Seq

Genomic Coordinates Reverse (-)

63089204 .. 63091174

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010110

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTTTCCCCATTATCTGTGTTTTTCTTGCCATGTTTCTTCCTCTTGAATCTGTCACTGCCGAGTCATTAAGCGACATATTGGCTCCTGTTATCTCTCCAGTCATGGTTGATGTTTGCAAAGGCATAGAATGTGGTAAAGGGACATGCAAGCCTTCAACCAGTAGCACTTTCTTTTTCGAATGTGAATGTGATCCTGGGTGGAATCGGACCACTATTGAGAATAGTGATCACTTCAAGTTTCTACCTTGTGTGATTCCCAATTGTAACCTGGATTACTCCTGTGCAAAAGCACCAGCCCCAATTTCAGATAAATCTAACAAGACCAACACATCAATCTTTGATCCTTGCTATTGGATGGATTGTGGAAGTGGAACTTGCAACAAGACATCAAAATTGGCGTACAAATGTGAATGTGGAGAAGGTTATTATAACCTGCTCAATGTGACTACCTTCCCTTGCTTTAAAGAATGTGCAATTGGAATCGATTGTGCAAACCTTGGGATTTCGGTGTCAAATAAGTCTACTAGTCCTGCACCACCTGCATTGGCTGACAATAGTAGCTCGACTACACATGCGAACTCTATTACATTGGTGGTCCTCATAATGTTTGTTGTTATGGTTCATGGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

22.7

Weight (kDa)

4.96

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14746 AT4G14746
fragaria_vesca	FvH4_4g00650 FvH4_4g00650 FvH4_4g00650 FvH4_4g00650 FvH4_4g01001
malus_domestica	MD13G1198400.v1.1 MD16G1198500.v1.1
prunus_persica	Prupe.1G020200_v2.0.a1
pyrus_communis	pycom13g17230 pycom16g16740
rosa_chinensis	RchiOBHm_Chr4g0387581
rosa_laevigata	RLG00000010110
rosa_multiflora	Rmu_sc0007248.1_g000007
rosa_roxburghii	Rroxscaffold_5G00334270
rosa_rugosa	Rorug03G0310800
rosa_samantha	Rh4AG016900 Rh4BG011700 Rh4CG018000 Rh4DG012600
rosa_wichuraiana	Rw4G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AarI	CACCTGC	1 cut(s)	550
Acc36I	ACCTGC	2 cut(s)	444, 550
AccI	GTMKAC	1 cut(s)	524
AclWI	GGATC	2 cut(s)	188, 338
AfaI	GTAC	1 cut(s)	404
AgsI	TTSAA	3 cut(s)	50, 159, 238
AhlI	ACTAGT	1 cut(s)	527
AjnI	CCWGG	2 cut(s)	196, 270
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	1 cut(s)	564
AluI	AGCT	1 cut(s)	564
AlwI	GGATC	2 cut(s)	188, 338
AspS9I	GGNCC	2 cut(s)	210, 598
AsuII	TTCGAA	1 cut(s)	180
AvaII	GGWCC	2 cut(s)	210, 598
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	2 cut(s)	198, 272
BclI	TGATCA	1 cut(s)	229
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	1 cut(s)	528
BfuAI	ACCTGC	2 cut(s)	444, 550
Bme1390I	CCNGG	2 cut(s)	198, 272
Bme18I	GGWCC	2 cut(s)	210, 598
BmgT120I	GGNCC	2 cut(s)	210, 598
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	2 cut(s)	198, 272
BpmI	CTGGAG	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	180
Bsa29I	ATCGAT	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	197, 499
Bse1I	ACTGG	2 cut(s)	101, 162
BseBI	CCWGG	2 cut(s)	198, 272
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	197, 499
BseGI	GGATG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	101, 162
BsgI	GTGCAG	1 cut(s)	519
BshVI	ATCGAT	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	193, 229, 343
BspDI	ATCGAT	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	87
BspMI	ACCTGC	2 cut(s)	444, 550
BspPI	GGATC	2 cut(s)	188, 338
BspT104I	TTCGAA	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	101, 162
BssECI	CCNNGG	2 cut(s)	197, 499
BssMI	GATC	3 cut(s)	193, 229, 343
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	2 cut(s)	198, 272
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	363
BstKTI	GATC	3 cut(s)	196, 232, 346
BstMBI	GATC	3 cut(s)	193, 229, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	2 cut(s)	198, 272
BstNSI	RCATGY	2 cut(s)	150, 578
BstSCI	CCNGG	2 cut(s)	196, 270
Bsu15I	ATCGAT	1 cut(s)	486
BsuTUI	ATCGAT	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	363
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
BveI	ACCTGC	2 cut(s)	444, 550
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	210, 598
ClaI	ATCGAT	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	403
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	5 cut(s)	34, 106, 147, 575, 626
CviJI	RGCY	6 cut(s)	5, 86, 154, 299, 551, 564
CviKI_1	RGCY	6 cut(s)	5, 86, 154, 299, 551, 564
CviQI	GTAC	1 cut(s)	403
DpnI	GATC	3 cut(s)	195, 231, 345
DpnII	GATC	3 cut(s)	193, 229, 343
DraI	TTTAAA	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	210, 598
EcoRII	CCWGG	2 cut(s)	196, 270
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	5 cut(s)	37, 109, 150, 578, 629
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	5 cut(s)	33, 105, 146, 574, 625
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	524
FokI	GGATG	1 cut(s)	370
FspBI	CTAG	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	84
Hin1II	CATG	5 cut(s)	37, 109, 150, 578, 629
HinfI	GANTC	5 cut(s)	50, 65, 205, 256, 483
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	2 cut(s)	210, 310
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	525
HpyAV	CCTTC	3 cut(s)	165, 416, 463
HpyCH4V	TGCA	8 cut(s)	120, 150, 287, 381, 476, 494, 536, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
Hsp92II	CATG	5 cut(s)	37, 109, 150, 578, 629
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	193, 229, 343
LmnI	GCTCC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	528
MaeIII	GTNAC	3 cut(s)	55, 266, 445
MalI	GATC	3 cut(s)	195, 231, 345
MboI	GATC	3 cut(s)	193, 229, 343
MboII	GAAGA	1 cut(s)	32
MfeI	CAATTG	2 cut(s)	262, 477
MluCI	AATT	4 cut(s)	262, 303, 395, 477
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	2 cut(s)	54, 611
MseI	TTAA	2 cut(s)	71, 465
MspR9I	CCNGG	2 cut(s)	198, 272
MunI	CAATTG	2 cut(s)	262, 477
MvaI	CCWGG	2 cut(s)	198, 272
MwoI	GCNNNNNNNGC	1 cut(s)	542
NdeII	GATC	3 cut(s)	193, 229, 343
NlaIII	CATG	5 cut(s)	37, 109, 150, 578, 629
NlaIV	GGNNCC	1 cut(s)	87
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	55, 445
NspI	RCATGY	2 cut(s)	150, 578
NspV	TTCGAA	1 cut(s)	180
PaqCI	CACCTGC	1 cut(s)	550
PfeI	GAWTC	4 cut(s)	50, 205, 256, 483
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PsiI	TTATAA	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	196, 270
PspGI	CCWGG	2 cut(s)	196, 270
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	210, 598
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	71, 465
Sau3AI	GATC	3 cut(s)	193, 229, 343
Sau96I	GGNCC	2 cut(s)	210, 598
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	198, 272
SetI	ASST	8 cut(s)	250, 273, 427, 438, 455, 501, 544, 566
SfuI	TTCGAA	1 cut(s)	180
SinI	GGWCC	2 cut(s)	210, 598
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	4 cut(s)	262, 303, 395, 477
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	196, 270
StyI	CCWWGG	1 cut(s)	499
TaqI	TCGA	3 cut(s)	180, 486, 566
TasI	AATT	4 cut(s)	262, 303, 395, 477
TfiI	GAWTC	4 cut(s)	50, 205, 256, 483
Tru1I	TTAA	2 cut(s)	71, 465
Tru9I	TTAA	2 cut(s)	71, 465
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	2 cut(s)	55, 445
Tsp45I	GTSAC	2 cut(s)	55, 445
TspDTI	ATGAA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	210, 598
XceI	RCATGY	2 cut(s)	150, 578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	524
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.