FvH4_4g00931

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018411
Physical Location & Seq
Forward (+)
808142 .. 808495
354 bp
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UTR
Exon/CDS
Intron
FvH4_4g00931.t1

Sequence Viewer

Length: 354 bp
ATGAAAGAGCCACCTCTTTCTCGCCGCAATCACCACCATGCTCAGCCCAATAGGCCCACCACCAACCACCACACCCACTTTAAGCTCGTCTGCTTCTTCAAAGGCACCTTCCACCCCCGCCCGCCCTCCGGCCTCCTCCAATACGCCAGCGGCGACACCAAGATCATCATCGTCGACTGCCTCGTCAACTTCTCCAAGCTCCTCTCCAAGATCTCTGATCTCTCCCCCGCTTTCCCTCCTTTGTCATTAACTACCAGCTCAGATCGGGGACCGCCGCCGCCCCGCTCGTCCACGTCGACTCTGACGAACACGTCCGCCGCATGGTCGACGAACGACCGAAGCCCAGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

118

Amino Acids

12.9

Weight (kDa)

9.92

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018411)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00931
rosa_laevigata RLG00000023083
rosa_multiflora Rmu_sc0001142.1_g000003 Rmu_sc0004143.1_g000013 Rmu_sc0007358.1_g000011
rosa_roxburghii Rroxscaffold_5G00371990 Rroxscaffold_7G00177740
rosa_samantha Rh1DG055600 Rh2CG269700 Rh5DG562600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 182, 310
AccB1I GGYRCC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 285
AccI GTMKAC 3 cut(s) 174, 296, 326
AfiI CCNNNNNNNGG 2 cut(s) 128, 321
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 1 cut(s) 100
AjiI CACGTC 2 cut(s) 294, 312
AluBI AGCT 4 cut(s) 85, 199, 258, 350
AluI AGCT 4 cut(s) 85, 199, 258, 350
AoxI GGCC 2 cut(s) 53, 130
AspS9I GGNCC 2 cut(s) 54, 269
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 269
BanI GGYRCC 1 cut(s) 104
BglI GCCNNNNNGGC 1 cut(s) 52
BglII AGATCT 1 cut(s) 210
BisI GCNGC 5 cut(s) 25, 151, 275, 278, 318
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 5 cut(s) 26, 152, 276, 279, 319
Bme18I GGWCC 1 cut(s) 269
BmgBI CACGTC 2 cut(s) 294, 312
BmgT120I GGNCC 2 cut(s) 54, 269
BmiI GGNNCC 2 cut(s) 106, 270
Bpu1102I GCTNAGC 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 167
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 321
Bse8I GATNNNNATC 1 cut(s) 167
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 128, 321
BseMII CTCAG 2 cut(s) 56, 273
BseRI GAGGAG 2 cut(s) 125, 191
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 2 cut(s) 55, 132
BshNI GGYRCC 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 337
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 2 cut(s) 128, 321
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 2 cut(s) 55, 132
Bsp143I GATC 4 cut(s) 162, 210, 217, 262
Bsp1720I GCTNAGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 55, 132
BspCNI CTCAG 2 cut(s) 55, 272
BspLI GGNNCC 2 cut(s) 106, 270
BspT107I GGYRCC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 285
BssMI GATC 4 cut(s) 162, 210, 217, 262
BstC8I GCNNGC 2 cut(s) 122, 148
BstDEI CTNAG 2 cut(s) 42, 259
BstKTI GATC 4 cut(s) 165, 213, 220, 265
BstMBI GATC 4 cut(s) 162, 210, 217, 262
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BsuRI GGCC 2 cut(s) 55, 132
BtrI CACGTC 2 cut(s) 294, 312
Cac8I GCNNGC 2 cut(s) 122, 148
Cfr13I GGNCC 2 cut(s) 54, 269
CviAII CATG 2 cut(s) 38, 321
CviJI RGCY 9 cut(s) 10, 46, 55, 85, 132, 199, 258, 342, 350
CviKI_1 RGCY 9 cut(s) 10, 46, 55, 85, 132, 199, 258, 342, 350
DdeI CTNAG 2 cut(s) 42, 259
DpnI GATC 4 cut(s) 164, 212, 219, 264
DpnII GATC 4 cut(s) 162, 210, 217, 262
DrdI GACNNNNNNGTC 2 cut(s) 182, 310
DseDI GACNNNNNNGTC 2 cut(s) 182, 310
EciI GGCGGA 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 269
FaeI CATG 2 cut(s) 41, 324
FaiI YATR 2 cut(s) 39, 322
FaqI GGGAC 1 cut(s) 282
FatI CATG 2 cut(s) 37, 320
FauI CCCGC 4 cut(s) 125, 129, 235, 290
FblI GTMKAC 3 cut(s) 174, 296, 326
Fnu4HI GCNGC 5 cut(s) 25, 151, 275, 278, 318
Fsp4HI GCNGC 5 cut(s) 25, 151, 275, 278, 318
GluI GCNGC 5 cut(s) 25, 151, 275, 278, 318
HaeIII GGCC 2 cut(s) 55, 132
HapII CCGG 1 cut(s) 129
Hin1II CATG 2 cut(s) 41, 324
HincII GTYRAC 4 cut(s) 175, 187, 297, 327
HindII GTYRAC 4 cut(s) 175, 187, 297, 327
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 1 cut(s) 298
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 5 cut(s) 175, 187, 291, 297, 327
Hpy188I TCNGA 3 cut(s) 217, 262, 303
Hpy8I GTNNAC 5 cut(s) 175, 187, 291, 297, 327
Hpy99I CGWCG 3 cut(s) 176, 298, 331
HpyAV CCTTC 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 293, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 2 cut(s) 42, 259
HpySE526I ACGT 2 cut(s) 293, 311
Hsp92II CATG 2 cut(s) 41, 324
Kzo9I GATC 4 cut(s) 162, 210, 217, 262
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 3 cut(s) 142, 160, 268
MaeII ACGT 2 cut(s) 293, 311
MalI GATC 4 cut(s) 164, 212, 219, 264
MbiI CCGCTC 1 cut(s) 285
MboI GATC 4 cut(s) 162, 210, 217, 262
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 210
MlyI GAGTC 1 cut(s) 292
MnlI CCTC 7 cut(s) 24, 136, 143, 146, 191, 212, 246
MseI TTAA 2 cut(s) 81, 248
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 4 cut(s) 162, 210, 217, 262
NlaIII CATG 2 cut(s) 41, 324
NlaIV GGNNCC 2 cut(s) 106, 270
PcsI WCGNNNNNNNCGW 4 cut(s) 150, 180, 293, 302
PkrI GCNGC 5 cut(s) 26, 152, 276, 279, 319
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 106, 270
PspPI GGNCC 2 cut(s) 54, 269
PsuI RGATCY 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 36
SalI GTCGAC 3 cut(s) 173, 295, 325
SaqAI TTAA 2 cut(s) 81, 248
SatI GCNGC 5 cut(s) 25, 151, 275, 278, 318
Sau3AI GATC 4 cut(s) 162, 210, 217, 262
Sau96I GGNCC 2 cut(s) 54, 269
SchI GAGTC 1 cut(s) 292
SetI ASST 8 cut(s) 16, 87, 110, 201, 260, 296, 314, 352
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 36
TaiI ACGT 2 cut(s) 296, 314
TaqI TCGA 3 cut(s) 174, 296, 326
TaqII GACCGA 1 cut(s) 351
TauI GCSGC 5 cut(s) 27, 153, 277, 280, 320
Tru1I TTAA 2 cut(s) 81, 248
Tru9I TTAA 2 cut(s) 81, 248
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 269
XmiI GTMKAC 3 cut(s) 174, 296, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.