Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001142.1

Orthogroup ID

OG0018411

Physical Location & Seq

Genomic Coordinates Reverse (-)

9698 .. 11132

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001142.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgaatgactatgttaccctcagactctctctctatctggactcctctctctctctctctctcacgcacacacacacatccagatctaaaaccaccataatcacacgcccccgcccccgtccccatgacaaccagctcacctacaccggcagcgagaccaagatccttgctgtcgaatgcaccatcaagttccccaccctcgtcgtcagggtctccgccctatcagacagcgacgtgtcgttcaagtaccagctccccggcgaagaccttgactccttgatctctgttaccaactcaactcagttcgtcttcaacctcaccgaacagtaccaagacctgaccgatgccctccagaacctcgacttcgaccgcaagatgacgcaagcaaacgacaattgtctagcgacttcggggaggggctgcggtggtggtggtggtggcggctgcggtgggagcggtctgcgggaacgggagacggagcgtgagcagcttgggggcaataaattcatacgccagaatccagtcacgagtcaggtagcctggttccgaattccagtgaccggtcgccggatttcggtcatcggttgccggattcaggtcactggagtccgccaccggagtcaagcaaggtctccaatgacttatttctctaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

218

Amino Acids

24.16

Weight (kDa)

9.22

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018411)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00931
rosa_laevigata	RLG00000023083
rosa_multiflora	Rmu_sc0001142.1_g000003 Rmu_sc0004143.1_g000013 Rmu_sc0007358.1_g000011
rosa_roxburghii	Rroxscaffold_5G00371990 Rroxscaffold_7G00177740
rosa_samantha	Rh1DG055600 Rh2CG269700 Rh5DG562600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	456
AciI	CCGC	9 cut(s)	112, 216, 370, 423, 441, 447, 456, 463, 610
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	503, 549
AfaI	GTAC	2 cut(s)	248, 329
AfiI	CCNNNNNNNGG	4 cut(s)	560, 567, 574, 595
AflIII	ACRYGT	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	560
AgsI	TTSAA	2 cut(s)	244, 313
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	539
AluBI	AGCT	3 cut(s)	136, 253, 490
AluI	AGCT	3 cut(s)	136, 253, 490
Alw26I	GTCTC	4 cut(s)	149, 217, 467, 636
AlwI	GGATC	1 cut(s)	157
ApeKI	GCWGC	4 cut(s)	150, 420, 444, 487
ApoI	RAATTY	2 cut(s)	503, 549
AsiGI	ACCGGT	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	130, 310
BauI	CACGAG	1 cut(s)	526
BbsI	GAAGAC	2 cut(s)	270, 301
BbvI	GCAGC	4 cut(s)	162, 407, 431, 499
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	541
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	4 cut(s)	149, 217, 467, 636
BfaI	CTAG	1 cut(s)	401
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	5 cut(s)	151, 421, 442, 445, 488
BlsI	GCNGC	5 cut(s)	152, 422, 443, 446, 489
Bme1390I	CCNGG	2 cut(s)	258, 541
BmgBI	CACGTC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	545
BmrFI	CCNGG	2 cut(s)	258, 541
BmsI	GCATC	1 cut(s)	334
BoxI	GACNNNNGTC	1 cut(s)	396
BpiI	GAAGAC	2 cut(s)	270, 301
BpmI	CTGGAG	2 cut(s)	335, 624
BpuMI	CCSGG	1 cut(s)	258
BsaI	GGTCTC	3 cut(s)	149, 217, 636
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	2 cut(s)	560, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	4 cut(s)	560, 567, 574, 595
Bse118I	RCCGGY	2 cut(s)	146, 560
Bse1I	ACTGG	3 cut(s)	521, 554, 607
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	4 cut(s)	560, 567, 574, 595
BseMII	CTCAG	2 cut(s)	34, 314
BseNI	ACTGG	3 cut(s)	521, 554, 607
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	4 cut(s)	162, 407, 431, 499
Bsh1285I	CGRYCG	2 cut(s)	370, 565
BshTI	ACCGGT	1 cut(s)	560
BsiEI	CGRYCG	2 cut(s)	370, 565
BsiSI	CCGG	6 cut(s)	147, 258, 561, 568, 589, 616
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	4 cut(s)	560, 567, 574, 595
BsmAI	GTCTC	4 cut(s)	149, 217, 467, 636
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	182
Bso31I	GGTCTC	3 cut(s)	149, 217, 636
Bsp143I	GATC	3 cut(s)	83, 162, 279
BspACI	CCGC	9 cut(s)	112, 216, 370, 423, 441, 447, 456, 463, 610
BspCNI	CTCAG	2 cut(s)	33, 313
BspLI	GGNNCC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	157
BspTNI	GGTCTC	3 cut(s)	149, 217, 636
BsrBI	CCGCTC	1 cut(s)	456
BsrFI	RCCGGY	2 cut(s)	146, 560
BsrI	ACTGG	3 cut(s)	521, 554, 607
BssAI	RCCGGY	2 cut(s)	146, 560
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	83, 162, 279
BssSI	CACGAG	1 cut(s)	526
Bst2BI	CACGAG	1 cut(s)	526
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	20, 300, 651
BstF5I	GGATG	1 cut(s)	77
BstKTI	GATC	3 cut(s)	86, 165, 282
BstMAI	GTCTC	4 cut(s)	149, 217, 467, 636
BstMBI	GATC	3 cut(s)	83, 162, 279
BstMCI	CGRYCG	2 cut(s)	370, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	453, 487
BstNI	CCWGG	1 cut(s)	541
BstPAI	GACNNNNGTC	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	256, 539
BstV1I	GCAGC	4 cut(s)	162, 407, 431, 499
BstV2I	GAAGAC	2 cut(s)	270, 301
BstX2I	RGATCY	2 cut(s)	83, 162
BstYI	RGATCY	2 cut(s)	83, 162
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	561, 600
Cac8I	GCNNGC	1 cut(s)	384
Cfr10I	RCCGGY	2 cut(s)	146, 560
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	247, 328
CspAI	ACCGGT	1 cut(s)	560
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	6 cut(s)	136, 253, 420, 444, 490, 539
CviKI_1	RGCY	6 cut(s)	136, 253, 420, 444, 490, 539
CviQI	GTAC	2 cut(s)	247, 328
DdeI	CTNAG	3 cut(s)	20, 300, 651
DpnI	GATC	3 cut(s)	85, 164, 281
DpnII	GATC	3 cut(s)	83, 162, 279
EciI	GGCGGA	2 cut(s)	205, 599
Eco31I	GGTCTC	3 cut(s)	149, 217, 636
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	539
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	1 cut(s)	128
FaiI	YATR	4 cut(s)	12, 98, 126, 509
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	1 cut(s)	124
FauI	CCCGC	2 cut(s)	119, 456
Fnu4HI	GCNGC	5 cut(s)	151, 421, 442, 445, 488
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	5 cut(s)	151, 421, 442, 445, 488
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	5 cut(s)	151, 421, 442, 445, 488
GsuI	CTGGAG	2 cut(s)	335, 624
HapII	CCGG	6 cut(s)	147, 258, 561, 568, 589, 616
HgaI	GACGC	1 cut(s)	388
Hin1II	CATG	1 cut(s)	128
HinfI	GANTC	8 cut(s)	24, 41, 272, 517, 529, 592, 606, 619
HpaII	CCGG	6 cut(s)	147, 258, 561, 568, 589, 616
HphI	GGTGA	2 cut(s)	130, 310
Hpy188I	TCNGA	3 cut(s)	23, 226, 548
Hpy188III	TCNNGA	4 cut(s)	38, 81, 352, 526
Hpy99I	CGWCG	2 cut(s)	206, 236
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	453, 487
HpyF3I	CTNAG	3 cut(s)	20, 300, 651
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	3 cut(s)	83, 162, 279
LmnI	GCTCC	3 cut(s)	258, 453, 478
Lsp1109I	GCAGC	4 cut(s)	162, 407, 431, 499
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	5 cut(s)	13, 286, 523, 556, 598
MalI	GATC	3 cut(s)	85, 164, 281
MbiI	CCGCTC	1 cut(s)	456
MboI	GATC	3 cut(s)	83, 162, 279
MboII	GAAGA	2 cut(s)	275, 301
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	2 cut(s)	83, 162
MluCI	AATT	3 cut(s)	394, 503, 549
MlyI	GAGTC	6 cut(s)	18, 35, 266, 538, 615, 628
MnlI	CCTC	7 cut(s)	29, 55, 209, 326, 359, 368, 408
MspI	CCGG	6 cut(s)	147, 258, 561, 568, 589, 616
MspR9I	CCNGG	2 cut(s)	258, 541
MunI	CAATTG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	2 cut(s)	453, 487
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	83, 162, 279
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	545
NmuCI	GTSAC	3 cut(s)	523, 556, 598
PctI	GAATGC	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	517, 592
PinAI	ACCGGT	1 cut(s)	560
PkrI	GCNGC	5 cut(s)	152, 422, 443, 446, 489
PleI	GAGTC	6 cut(s)	18, 35, 266, 537, 614, 627
PpsI	GAGTC	6 cut(s)	18, 35, 266, 537, 614, 627
PshAI	GACNNNNGTC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	1 cut(s)	545
PsuI	RGATCY	2 cut(s)	83, 162
RsaI	GTAC	2 cut(s)	248, 329
RsaNI	GTAC	2 cut(s)	247, 328
SatI	GCNGC	5 cut(s)	151, 421, 442, 445, 488
Sau3AI	GATC	3 cut(s)	83, 162, 279
SchI	GAGTC	6 cut(s)	18, 35, 266, 538, 615, 628
ScrFI	CCNGG	2 cut(s)	258, 541
SfaNI	GCATC	1 cut(s)	334
Sse9I	AATT	3 cut(s)	394, 503, 549
SsiI	CCGC	9 cut(s)	112, 216, 370, 423, 441, 447, 456, 463, 610
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	256, 539
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	3 cut(s)	174, 360, 366
TaqII	GACCGA	2 cut(s)	356, 565
TasI	AATT	3 cut(s)	394, 503, 549
TauI	GCSGC	1 cut(s)	444
TfiI	GAWTC	2 cut(s)	517, 592
TscAI	CASTG	2 cut(s)	561, 607
TseFI	GTSAC	3 cut(s)	523, 556, 598
TseI	GCWGC	4 cut(s)	150, 420, 444, 487
Tsp45I	GTSAC	3 cut(s)	523, 556, 598
TspDTI	ATGAA	2 cut(s)	17, 496
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	2 cut(s)	561, 607
XapI	RAATTY	2 cut(s)	503, 549
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.