Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018411

Physical Location & Seq

Genomic Coordinates Reverse (-)

86712340 .. 86714841

Gene Structure 2502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG562600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGCTCAAAGAGGGTCATGGACGTCCCAAACTCCGAAAGCTTTATGGGCGAGACCAAGATCCTCGCCGTCGAACACACCATCAAGTTCCCCGCCCTCTTCGACAGCGACGTGTCGTTCAAGTACCAGCTCCCCGGGGAAGACCTTGACTCCTTGATCTCCGTCACCAACTCGACTCAGCTCGTCTTCAACCTCACCGAACAGTACCAGGACCTGATCGACGCCCTCCAGAACCTCGACTTCGACGGCAAGATGACGCAGGAAAACGGCAAGTCGTTCATCGTCTCGGACTTCGGGCTCAACCGCTCACGCAGGCTCACACTCGACAACGATGGCAACCTCCGCATTTACAGCTTCGATCCGAGTATTGCGGATTGGACAGTTGTCTGGCGACTCCGGGGAGGGGCTGCGGTTCGATCGTGTGGTGGTGACGTGAACATGGTGCAACAGGCGACGGAGTTCCTGGATTGGTGGCGGCGGTGGATGCGGTCGGTGTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

167

Amino Acids

19.12

Weight (kDa)

4.87

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018411)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00931
rosa_laevigata	RLG00000023083
rosa_multiflora	Rmu_sc0001142.1_g000003 Rmu_sc0004143.1_g000013 Rmu_sc0007358.1_g000011
rosa_roxburghii	Rroxscaffold_5G00371990 Rroxscaffold_7G00177740
rosa_samantha	Rh1DG055600 Rh2CG269700 Rh5DG562600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
AccBSI	CCGCTC	1 cut(s)	306
AciI	CCGC	8 cut(s)	93, 304, 343, 371, 410, 475, 478, 487
AclWI	GGATC	2 cut(s)	55, 353
AcyI	GRCGYC	2 cut(s)	24, 222
AfaI	GTAC	2 cut(s)	125, 206
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	121, 190
AjiI	CACGTC	2 cut(s)	112, 433
AjnI	CCWGG	3 cut(s)	207, 462, 497
AluBI	AGCT	5 cut(s)	6, 42, 130, 181, 354
AluI	AGCT	5 cut(s)	6, 42, 130, 181, 354
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	47, 289
AlwI	GGATC	2 cut(s)	55, 353
AlwNI	CAGNNNCTG	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	3 cut(s)	135, 136, 398
AsuHPI	GGTGA	3 cut(s)	157, 187, 440
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	2 cut(s)	8, 300
BbsI	GAAGAC	2 cut(s)	147, 178
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	89, 326
BceAI	ACGGC	3 cut(s)	53, 262, 283
BciT130I	CCWGG	3 cut(s)	209, 464, 499
BcnI	CCSGG	3 cut(s)	135, 136, 398
BcoDI	GTCTC	2 cut(s)	47, 289
BisI	GCNGC	2 cut(s)	408, 476
BlsI	GCNGC	2 cut(s)	409, 477
Bme1390I	CCNGG	6 cut(s)	135, 136, 209, 398, 464, 499
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	134
BmgBI	CACGTC	2 cut(s)	112, 433
BmgT120I	GGNCC	1 cut(s)	211
BmrFI	CCNGG	6 cut(s)	135, 136, 209, 398, 464, 499
BmsI	GCATC	1 cut(s)	474
BoxI	GACNNNNGTC	1 cut(s)	383
BpiI	GAAGAC	2 cut(s)	147, 178
BpmI	CTGGAG	1 cut(s)	212
BpuMI	CCSGG	3 cut(s)	135, 136, 398
BsaHI	GRCGYC	2 cut(s)	24, 222
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	133, 134, 135, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
BseBI	CCWGG	3 cut(s)	209, 464, 499
BseDI	CCNNGG	4 cut(s)	133, 134, 135, 397
BseGI	GGATG	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	394
Bsh1285I	CGRYCG	2 cut(s)	419, 491
BsiEI	CGRYCG	2 cut(s)	419, 491
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	135, 397
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	47, 289
BsmBI	CGTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	8, 300
Bsp143I	GATC	5 cut(s)	60, 156, 216, 358, 416
BspACI	CCGC	8 cut(s)	93, 304, 343, 371, 410, 475, 478, 487
BspCNI	CTCAG	1 cut(s)	190
BspPI	GGATC	2 cut(s)	55, 353
BspTNI	GGTCTC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	306
BssECI	CCNNGG	4 cut(s)	133, 134, 135, 397
BssMI	GATC	5 cut(s)	60, 156, 216, 358, 416
BssNI	GRCGYC	2 cut(s)	24, 222
Bst2UI	CCWGG	3 cut(s)	209, 464, 499
Bst4CI	ACNGT	2 cut(s)	204, 382
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	2 cut(s)	24, 222
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	489
BstKTI	GATC	5 cut(s)	63, 159, 219, 361, 419
BstMAI	GTCTC	2 cut(s)	47, 289
BstMBI	GATC	5 cut(s)	60, 156, 216, 358, 416
BstMCI	CGRYCG	2 cut(s)	419, 491
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 342, 351, 484
BstNI	CCWGG	3 cut(s)	209, 464, 499
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	6 cut(s)	133, 134, 207, 396, 462, 497
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	2 cut(s)	147, 178
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BtrI	CACGTC	2 cut(s)	112, 433
BtsCI	GGATG	1 cut(s)	489
Cac8I	GCNNGC	1 cut(s)	314
CaiI	CAGNNNCTG	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	211
Cfr9I	CCCGGG	1 cut(s)	134
CseI	GACGC	2 cut(s)	230, 265
Csp6I	GTAC	2 cut(s)	124, 205
CviAII	CATG	2 cut(s)	19, 439
CviJI	RGCY	8 cut(s)	6, 42, 130, 181, 298, 316, 354, 407
CviKI_1	RGCY	8 cut(s)	6, 42, 130, 181, 298, 316, 354, 407
CviQI	GTAC	2 cut(s)	124, 205
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	5 cut(s)	62, 158, 218, 360, 418
DpnII	GATC	5 cut(s)	60, 156, 216, 358, 416
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	8, 300
Eco31I	GGTCTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	3 cut(s)	207, 462, 497
EcoT38I	GRGCYC	2 cut(s)	8, 300
Esp3I	CGTCTC	1 cut(s)	289
FaeI	CATG	2 cut(s)	22, 442
FaiI	YATR	3 cut(s)	20, 47, 440
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	2 cut(s)	18, 438
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	408, 476
FokI	GGATG	1 cut(s)	496
FriOI	GRGCYC	2 cut(s)	8, 300
Fsp4HI	GCNGC	2 cut(s)	408, 476
GluI	GCNGC	2 cut(s)	408, 476
GsuI	CTGGAG	1 cut(s)	212
HapII	CCGG	2 cut(s)	135, 397
HgaI	GACGC	2 cut(s)	230, 265
Hin1I	GRCGYC	2 cut(s)	24, 222
Hin1II	CATG	2 cut(s)	22, 442
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	3 cut(s)	149, 175, 393
HpaII	CCGG	2 cut(s)	135, 397
HphI	GGTGA	3 cut(s)	157, 187, 440
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	3 cut(s)	37, 289, 363
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	5 cut(s)	74, 113, 224, 248, 457
HpyCH4III	ACNGT	2 cut(s)	204, 382
HpyCH4IV	ACGT	3 cut(s)	24, 111, 432
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 342, 351, 484
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	3 cut(s)	24, 111, 432
Hsp92I	GRCGYC	2 cut(s)	24, 222
Hsp92II	CATG	2 cut(s)	22, 442
Kzo9I	GATC	5 cut(s)	60, 156, 216, 358, 416
LmnI	GCTCC	1 cut(s)	135
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	1 cut(s)	474
MaeII	ACGT	3 cut(s)	24, 111, 432
MaeIII	GTNAC	2 cut(s)	163, 428
MalI	GATC	5 cut(s)	62, 158, 218, 360, 418
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	5 cut(s)	60, 156, 216, 358, 416
MboII	GAAGA	3 cut(s)	91, 152, 178
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	8, 300
MlyI	GAGTC	3 cut(s)	143, 169, 387
MnlI	CCTC	8 cut(s)	6, 74, 107, 203, 236, 245, 350, 395
MspI	CCGG	2 cut(s)	135, 397
MspR9I	CCNGG	6 cut(s)	135, 136, 209, 398, 464, 499
MvaI	CCWGG	3 cut(s)	209, 464, 499
MwoI	GCNNNNNNNGC	4 cut(s)	48, 342, 351, 484
NciI	CCSGG	3 cut(s)	135, 136, 398
NdeII	GATC	5 cut(s)	60, 156, 216, 358, 416
NlaIII	CATG	2 cut(s)	22, 442
NmuCI	GTSAC	2 cut(s)	163, 428
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfoI	TCCNGGA	1 cut(s)	462
PkrI	GCNGC	2 cut(s)	409, 477
Ple19I	CGATCG	1 cut(s)	419
PleI	GAGTC	3 cut(s)	143, 169, 387
PpsI	GAGTC	3 cut(s)	143, 169, 387
PpuMI	RGGWCCY	1 cut(s)	211
PshAI	GACNNNNGTC	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	3 cut(s)	207, 462, 497
PspGI	CCWGG	3 cut(s)	207, 462, 497
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	60
PvuI	CGATCG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	125, 206
RsaNI	GTAC	2 cut(s)	124, 205
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	2 cut(s)	408, 476
Sau3AI	GATC	5 cut(s)	60, 156, 216, 358, 416
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	3 cut(s)	143, 169, 387
ScrFI	CCNGG	6 cut(s)	135, 136, 209, 398, 464, 499
SduI	GDGCHC	2 cut(s)	8, 300
SfaNI	GCATC	1 cut(s)	474
SinI	GGWCC	1 cut(s)	211
SmaI	CCCGGG	1 cut(s)	136
SsiI	CCGC	8 cut(s)	93, 304, 343, 371, 410, 475, 478, 487
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	6 cut(s)	133, 134, 207, 396, 462, 497
TaaI	ACNGT	2 cut(s)	204, 382
TaiI	ACGT	3 cut(s)	27, 114, 435
TaqI	TCGA	9 cut(s)	72, 102, 173, 219, 237, 243, 324, 357, 415
TauI	GCSGC	1 cut(s)	478
TseFI	GTSAC	2 cut(s)	163, 428
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	2 cut(s)	163, 428
TspDTI	ATGAA	1 cut(s)	268
TspGWI	ACGGA	2 cut(s)	151, 470
TspMI	CCCGGG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	211
XmaI	CCCGGG	1 cut(s)	134
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.