PB1 domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g00931 |
| rosa_laevigata | RLG00000023083 |
| rosa_multiflora | Rmu_sc0001142.1_g000003 Rmu_sc0004143.1_g000013 Rmu_sc0007358.1_g000011 |
| rosa_roxburghii | Rroxscaffold_5G00371990 Rroxscaffold_7G00177740 |
| rosa_samantha | Rh1DG055600 Rh2CG269700 Rh5DG562600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 115, 195 |
| AclWI | GGATC | 1 cut(s) | 157 |
| AcuI | CTGAAG | 1 cut(s) | 120 |
| AgsI | TTSAA | 1 cut(s) | 21 |
| AjnI | CCWGG | 1 cut(s) | 206 |
| AluBI | AGCT | 2 cut(s) | 98, 136 |
| AluI | AGCT | 2 cut(s) | 98, 136 |
| AlwI | GGATC | 1 cut(s) | 157 |
| AoxI | GGCC | 1 cut(s) | 57 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 87, 119 |
| AspS9I | GGNCC | 1 cut(s) | 58 |
| AsuHPI | GGTGA | 1 cut(s) | 210 |
| BauI | CACGAG | 2 cut(s) | 42, 70 |
| BccI | CCATC | 2 cut(s) | 126, 229 |
| BceAI | ACGGC | 1 cut(s) | 155 |
| BciT130I | CCWGG | 1 cut(s) | 208 |
| BfaI | CTAG | 1 cut(s) | 244 |
| Bme1390I | CCNGG | 1 cut(s) | 208 |
| BmgT120I | GGNCC | 1 cut(s) | 58 |
| BmrFI | CCNGG | 1 cut(s) | 208 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bse1I | ACTGG | 1 cut(s) | 151 |
| BseBI | CCWGG | 1 cut(s) | 208 |
| BseGI | GGATG | 1 cut(s) | 118 |
| BseNI | ACTGG | 1 cut(s) | 151 |
| BseRI | GAGGAG | 3 cut(s) | 15, 205, 216 |
| BshFI | GGCC | 1 cut(s) | 59 |
| BsnI | GGCC | 1 cut(s) | 59 |
| Bsp143I | GATC | 1 cut(s) | 162 |
| BspACI | CCGC | 2 cut(s) | 115, 195 |
| BspANI | GGCC | 1 cut(s) | 59 |
| BspPI | GGATC | 1 cut(s) | 157 |
| BsrI | ACTGG | 1 cut(s) | 151 |
| BssMI | GATC | 1 cut(s) | 162 |
| BssSI | CACGAG | 2 cut(s) | 42, 70 |
| Bst2BI | CACGAG | 2 cut(s) | 42, 70 |
| Bst2UI | CCWGG | 1 cut(s) | 208 |
| Bst6I | CTCTTC | 1 cut(s) | 13 |
| BstF5I | GGATG | 1 cut(s) | 118 |
| BstKTI | GATC | 1 cut(s) | 165 |
| BstMBI | GATC | 1 cut(s) | 162 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 203 |
| BstNI | CCWGG | 1 cut(s) | 208 |
| BstSCI | CCNGG | 1 cut(s) | 206 |
| BstX2I | RGATCY | 1 cut(s) | 162 |
| BstYI | RGATCY | 1 cut(s) | 162 |
| BsuRI | GGCC | 1 cut(s) | 59 |
| BtsCI | GGATG | 1 cut(s) | 118 |
| BtsIMutI | CAGTG | 1 cut(s) | 144 |
| Cfr13I | GGNCC | 1 cut(s) | 58 |
| CviAII | CATG | 1 cut(s) | 125 |
| CviJI | RGCY | 4 cut(s) | 59, 98, 136, 211 |
| CviKI_1 | RGCY | 4 cut(s) | 59, 98, 136, 211 |
| DpnI | GATC | 1 cut(s) | 164 |
| DpnII | GATC | 1 cut(s) | 162 |
| Eam1104I | CTCTTC | 1 cut(s) | 13 |
| EarI | CTCTTC | 1 cut(s) | 13 |
| Eco57I | CTGAAG | 1 cut(s) | 120 |
| EcoRII | CCWGG | 1 cut(s) | 206 |
| FaeI | CATG | 1 cut(s) | 128 |
| FaiI | YATR | 1 cut(s) | 126 |
| FatI | CATG | 1 cut(s) | 124 |
| FauI | CCCGC | 1 cut(s) | 202 |
| FokI | GGATG | 1 cut(s) | 105 |
| FspBI | CTAG | 1 cut(s) | 244 |
| HaeIII | GGCC | 1 cut(s) | 59 |
| Hin1II | CATG | 1 cut(s) | 128 |
| HphI | GGTGA | 1 cut(s) | 210 |
| Hpy188I | TCNGA | 1 cut(s) | 30 |
| Hpy99I | CGWCG | 3 cut(s) | 34, 176, 206 |
| HpyAV | CCTTC | 1 cut(s) | 49 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 203 |
| Hsp92II | CATG | 1 cut(s) | 128 |
| Kzo9I | GATC | 1 cut(s) | 162 |
| LpnPI | CCDG | 8 cut(s) | 51, 74, 79, 97, 132, 146, 193, 220 |
| MaeI | CTAG | 1 cut(s) | 244 |
| MaeIII | GTNAC | 1 cut(s) | 154 |
| MalI | GATC | 1 cut(s) | 164 |
| MboI | GATC | 1 cut(s) | 162 |
| MflI | RGATCY | 1 cut(s) | 162 |
| MluCI | AATT | 1 cut(s) | 16 |
| MmeI | TCCRAC | 1 cut(s) | 53 |
| MnlI | CCTC | 6 cut(s) | 22, 36, 176, 209, 226, 237 |
| MseI | TTAA | 1 cut(s) | 186 |
| MslI | CAYNNNNRTG | 1 cut(s) | 123 |
| MspR9I | CCNGG | 1 cut(s) | 208 |
| MvaI | CCWGG | 1 cut(s) | 208 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 203 |
| NdeII | GATC | 1 cut(s) | 162 |
| NlaIII | CATG | 1 cut(s) | 128 |
| NmuCI | GTSAC | 1 cut(s) | 154 |
| Psp6I | CCWGG | 1 cut(s) | 206 |
| PspGI | CCWGG | 1 cut(s) | 206 |
| PspPI | GGNCC | 1 cut(s) | 58 |
| PsuI | RGATCY | 1 cut(s) | 162 |
| RseI | CAYNNNNRTG | 1 cut(s) | 123 |
| SaqAI | TTAA | 1 cut(s) | 186 |
| Sau3AI | GATC | 1 cut(s) | 162 |
| Sau96I | GGNCC | 1 cut(s) | 58 |
| ScrFI | CCNGG | 1 cut(s) | 208 |
| SetI | ASST | 2 cut(s) | 100, 138 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 123 |
| Sse9I | AATT | 1 cut(s) | 16 |
| SsiI | CCGC | 2 cut(s) | 115, 195 |
| SspMI | CTAG | 1 cut(s) | 244 |
| StyD4I | CCNGG | 1 cut(s) | 206 |
| TaqI | TCGA | 1 cut(s) | 174 |
| TasI | AATT | 1 cut(s) | 16 |
| Tru1I | TTAA | 1 cut(s) | 186 |
| Tru9I | TTAA | 1 cut(s) | 186 |
| TscAI | CASTG | 1 cut(s) | 151 |
| TseFI | GTSAC | 1 cut(s) | 154 |
| Tsp45I | GTSAC | 1 cut(s) | 154 |
| TspRI | CASTG | 1 cut(s) | 151 |
| XspI | CTAG | 1 cut(s) | 244 |