RLG00000023083

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018411
Physical Location & Seq
Reverse (-)
17856192 .. 17857168
977 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023083

Sequence Viewer

Length: 507 bp
ATGGGCCGGGTCGGGTTGCTCACCTTTGCCGTCGAACGCACCATCAAGTTCCCCGCCCTCGTCGCCAGGGTCTCCGCCCTCTCCGACAGCGACGTGTCGTTCAAGTACCAGCTCCCCGGGGAAGACCTCGACTCCTTGATCTCTGTCACCAACTTGACTCAGCTCGTCTTCAACCTCACCGAACAGCACCAGGACCTGACCAACGCCCTCCAGAACCTCGACTTCAACGGTAAGATGACACAGCTTCGATCTGAGTATTGCCTATTGGATAGTTGTTTGGCAACTCCGGGGAGGGGTTGCGATGGTGGTGGTGGCGGCTGCGGTGGGAGCGGTCTGCGTGAACGGGAGAGGGAGCATGAGCAGCTTGGTGACGGAGTTCCTGGATTGGTGGCGGTGGTGGATGCAATCGGTGTCCGAGTGACTGACTTGCAGGAGGGTGGAGAGGGGGCTGGGCTGGGTCAGCCTTGTTGGACCTTGGGCCTTAACTTTCCTTTAGGGCCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

169

Amino Acids

17.76

Weight (kDa)

4.56

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018411)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00931
rosa_laevigata RLG00000023083
rosa_multiflora Rmu_sc0001142.1_g000003 Rmu_sc0004143.1_g000013 Rmu_sc0007358.1_g000011
rosa_roxburghii Rroxscaffold_5G00371990 Rroxscaffold_7G00177740
rosa_samantha Rh1DG055600 Rh2CG269700 Rh5DG562600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 330
AciI CCGC 6 cut(s) 54, 75, 315, 321, 330, 392
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 3 cut(s) 103, 172, 226
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 3 cut(s) 65, 189, 379
AluBI AGCT 4 cut(s) 112, 163, 244, 364
AluI AGCT 4 cut(s) 112, 163, 244, 364
Alw26I GTCTC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 3 cut(s) 4, 478, 497
ApeKI GCWGC 2 cut(s) 318, 361
AspS9I GGNCC 5 cut(s) 4, 193, 471, 478, 497
AsuC2I CCSGG 4 cut(s) 8, 117, 118, 288
AsuHPI GGTGA 4 cut(s) 13, 139, 169, 380
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 2 cut(s) 193, 471
BbsI GAAGAC 2 cut(s) 129, 160
BbvI GCAGC 2 cut(s) 305, 373
BccI CCATC 2 cut(s) 50, 296
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 3 cut(s) 67, 191, 381
BcnI CCSGG 4 cut(s) 8, 117, 118, 288
BcoDI GTCTC 1 cut(s) 76
BisI GCNGC 3 cut(s) 316, 319, 362
BlsI GCNGC 3 cut(s) 317, 320, 363
Bme1390I CCNGG 7 cut(s) 8, 67, 117, 118, 191, 288, 381
Bme18I GGWCC 2 cut(s) 193, 471
BmeT110I CYCGRG 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 5 cut(s) 4, 193, 471, 478, 497
BmrFI CCNGG 7 cut(s) 8, 67, 117, 118, 191, 288, 381
BmsI GCATC 1 cut(s) 391
BpiI GAAGAC 2 cut(s) 129, 160
BpmI CTGGAG 1 cut(s) 194
BpuMI CCSGG 4 cut(s) 8, 117, 118, 288
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 6 cut(s) 66, 115, 116, 117, 287, 474
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 293
BseBI CCWGG 3 cut(s) 67, 191, 381
BseDI CCNNGG 6 cut(s) 66, 115, 116, 117, 287, 474
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 2 cut(s) 173, 243
BseXI GCAGC 2 cut(s) 305, 373
BseYI CCCAGC 2 cut(s) 449, 454
BshFI GGCC 3 cut(s) 6, 480, 499
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 3 cut(s) 7, 117, 287
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 3 cut(s) 6, 480, 499
Bso31I GGTCTC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 116
Bsp143I GATC 2 cut(s) 138, 248
BspACI CCGC 6 cut(s) 54, 75, 315, 321, 330, 392
BspANI GGCC 3 cut(s) 6, 480, 499
BspCNI CTCAG 2 cut(s) 172, 244
BspTNI GGTCTC 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 330
BssECI CCNNGG 6 cut(s) 66, 115, 116, 117, 287, 474
BssMI GATC 2 cut(s) 138, 248
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 3 cut(s) 67, 191, 381
Bst4CI ACNGT 1 cut(s) 230
BstDEI CTNAG 2 cut(s) 159, 252
BstF5I GGATG 1 cut(s) 406
BstKTI GATC 2 cut(s) 141, 251
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 2 cut(s) 138, 248
BstMWI GCNNNNNNNGC 4 cut(s) 62, 327, 361, 460
BstNI CCWGG 3 cut(s) 67, 191, 381
BstSCI CCNGG 7 cut(s) 6, 65, 115, 116, 189, 286, 379
BstV1I GCAGC 2 cut(s) 305, 373
BstV2I GAAGAC 2 cut(s) 129, 160
BsuRI GGCC 3 cut(s) 6, 480, 499
BtgZI GCGATG 1 cut(s) 315
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 406
CaiI CAGNNNCTG 1 cut(s) 196
Cfr13I GGNCC 5 cut(s) 4, 193, 471, 478, 497
Cfr9I CCCGGG 1 cut(s) 116
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 356
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 2 cut(s) 159, 252
DpnI GATC 2 cut(s) 140, 250
DpnII GATC 2 cut(s) 138, 248
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 2 cut(s) 193, 471
Eco88I CYCGRG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 3 cut(s) 65, 189, 379
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 1 cut(s) 359
FaiI YATR 1 cut(s) 357
FatI CATG 1 cut(s) 355
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 3 cut(s) 316, 319, 362
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 3 cut(s) 316, 319, 362
GluI GCNGC 3 cut(s) 316, 319, 362
GsaI CCCAGC 2 cut(s) 453, 458
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 6, 480, 499
HapII CCGG 3 cut(s) 7, 117, 287
Hin1II CATG 1 cut(s) 359
HinfI GANTC 2 cut(s) 131, 157
HpaII CCGG 3 cut(s) 7, 117, 287
HphI GGTGA 4 cut(s) 13, 139, 169, 380
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 3 cut(s) 85, 253, 416
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 341
Hpy99I CGWCG 3 cut(s) 35, 65, 95
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 404, 430
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 327, 361, 460
HpyF3I CTNAG 2 cut(s) 159, 252
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 1 cut(s) 359
Kzo9I GATC 2 cut(s) 138, 248
LmnI GCTCC 3 cut(s) 117, 327, 352
Lsp1109I GCAGC 2 cut(s) 305, 373
LweI GCATC 1 cut(s) 391
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 145, 368, 418
MalI GATC 2 cut(s) 140, 250
MbiI CCGCTC 1 cut(s) 330
MboI GATC 2 cut(s) 138, 248
MboII GAAGA 2 cut(s) 134, 160
MlyI GAGTC 2 cut(s) 125, 151
MmeI TCCRAC 2 cut(s) 108, 449
MseI TTAA 1 cut(s) 483
MspI CCGG 3 cut(s) 7, 117, 287
MspR9I CCNGG 7 cut(s) 8, 67, 117, 118, 191, 288, 381
MvaI CCWGG 3 cut(s) 67, 191, 381
MwoI GCNNNNNNNGC 4 cut(s) 62, 327, 361, 460
NciI CCSGG 4 cut(s) 8, 117, 118, 288
NdeII GATC 2 cut(s) 138, 248
NlaIII CATG 1 cut(s) 359
NmuCI GTSAC 3 cut(s) 145, 368, 418
PfoI TCCNGGA 1 cut(s) 379
PkrI GCNGC 3 cut(s) 317, 320, 363
PleI GAGTC 2 cut(s) 125, 151
PpsI GAGTC 2 cut(s) 125, 151
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 3 cut(s) 65, 189, 379
PspFI CCCAGC 2 cut(s) 449, 454
PspGI CCWGG 3 cut(s) 65, 189, 379
PspPI GGNCC 5 cut(s) 4, 193, 471, 478, 497
PspPPI RGGWCCY 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 196
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 3 cut(s) 316, 319, 362
Sau3AI GATC 2 cut(s) 138, 248
Sau96I GGNCC 5 cut(s) 4, 193, 471, 478, 497
SchI GAGTC 2 cut(s) 125, 151
ScrFI CCNGG 7 cut(s) 8, 67, 117, 118, 191, 288, 381
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 2 cut(s) 193, 471
SmaI CCCGGG 1 cut(s) 118
SsiI CCGC 6 cut(s) 54, 75, 315, 321, 330, 392
StyD4I CCNGG 7 cut(s) 6, 65, 115, 116, 189, 286, 379
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 1 cut(s) 96
TaqI TCGA 4 cut(s) 33, 129, 219, 247
TauI GCSGC 1 cut(s) 318
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TseFI GTSAC 3 cut(s) 145, 368, 418
TseI GCWGC 2 cut(s) 318, 361
Tsp45I GTSAC 3 cut(s) 145, 368, 418
TspGWI ACGGA 1 cut(s) 387
TspMI CCCGGG 1 cut(s) 116
VpaK11BI GGWCC 2 cut(s) 193, 471
XmaI CCCGGG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.