Rmu_sc0007358.1_g000011

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007358.1
OG0018411
Physical Location & Seq
Forward (+)
86883 .. 87161
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007358.1_g000011.1.cds

Sequence Viewer

Length: 279 bp
atgaaagaaccacctctctctagttgcaaaaagcctactaccaaccacacccagcccaagaatcttaagctcgtctgcagcttcaacggcgtattccaccctctaccaccgtctgggaagctccactacgtcggcggtgagacccaaatcatctccatcaaccggaccattgcattctccaagctccgatcgaagattttcgatctctcccccactccggatcgagctcttgtgcaacccacgcttcaacttcgactacgacgtccgccgtatggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

92

Amino Acids

10.31

Weight (kDa)

10.36

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018411)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00931
rosa_laevigata RLG00000023083
rosa_multiflora Rmu_sc0001142.1_g000003 Rmu_sc0004143.1_g000013 Rmu_sc0007358.1_g000011
rosa_roxburghii Rroxscaffold_5G00371990 Rroxscaffold_7G00177740
rosa_samantha Rh1DG055600 Rh2CG269700 Rh5DG562600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 261
AatII GACGTC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 2 cut(s) 135, 266
AclWI GGATC 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 262
AfiI CCNNNNNNNGG 4 cut(s) 113, 162, 217, 272
AflII CTTAAG 1 cut(s) 65
AgsI TTSAA 2 cut(s) 85, 248
AluBI AGCT 5 cut(s) 70, 81, 121, 184, 227
AluI AGCT 5 cut(s) 70, 81, 121, 184, 227
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 228
Aor13HI TCCGGA 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 164
BceAI ACGGC 2 cut(s) 103, 253
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 1 cut(s) 76
BfrI CTTAAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 134
BsaWI WCCGGW 2 cut(s) 162, 217
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 162, 217, 272
Bse3DI GCAATG 1 cut(s) 168
BseAI TCCGGA 1 cut(s) 217
BseLI CCNNNNNNNGG 4 cut(s) 113, 162, 217, 272
BseMI GCAATG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 90
BseYI CCCAGC 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 2 cut(s) 163, 218
BslI CCNNNNNNNGG 4 cut(s) 113, 162, 217, 272
BsmAI GTCTC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 229
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 3 cut(s) 188, 202, 220
BspACI CCGC 2 cut(s) 135, 266
BspEI TCCGGA 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 1 cut(s) 228
BspTI CTTAAG 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 168
BssMI GATC 3 cut(s) 188, 202, 220
BssNI GRCGYC 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 262
BstAFI CTTAAG 1 cut(s) 65
BstKTI GATC 3 cut(s) 191, 205, 223
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 188, 202, 220
BstMCI CGRYCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 2 cut(s) 87, 241
BstSFI CTRYAG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 165
CviJI RGCY 7 cut(s) 34, 55, 70, 81, 121, 184, 227
CviKI_1 RGCY 7 cut(s) 34, 55, 70, 81, 121, 184, 227
DpnI GATC 3 cut(s) 190, 204, 222
DpnII GATC 3 cut(s) 188, 202, 220
DrdI GACNNNNNNGTC 1 cut(s) 261
DseDI GACNNNNNNGTC 1 cut(s) 261
EciI GGCGGA 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 229
FaiI YATR 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 79
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 1 cut(s) 21
GluI GCNGC 1 cut(s) 79
GsaI CCCAGC 1 cut(s) 55
HapII CCGG 2 cut(s) 163, 218
Hin1I GRCGYC 1 cut(s) 262
HinfI GANTC 1 cut(s) 61
HpaII CCGG 2 cut(s) 163, 218
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 1 cut(s) 218
Hpy99I CGWCG 2 cut(s) 134, 264
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 2 cut(s) 129, 262
HpyCH4V TGCA 4 cut(s) 27, 78, 173, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 241
HpySE526I ACGT 2 cut(s) 129, 262
Hsp92I GRCGYC 1 cut(s) 262
Kpn2I TCCGGA 1 cut(s) 217
Kzo9I GATC 3 cut(s) 188, 202, 220
LmnI GCTCC 2 cut(s) 126, 189
LpnPI CCDG 4 cut(s) 65, 99, 176, 231
Lsp1109I GCAGC 1 cut(s) 90
MaeI CTAG 1 cut(s) 21
MaeII ACGT 2 cut(s) 129, 262
MalI GATC 3 cut(s) 190, 204, 222
MboI GATC 3 cut(s) 188, 202, 220
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 229
MnlI CCTC 2 cut(s) 24, 111
MroI TCCGGA 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 66
MspCI CTTAAG 1 cut(s) 65
MspI CCGG 2 cut(s) 163, 218
Mva1269I GAATGC 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 87, 241
NdeII GATC 3 cut(s) 188, 202, 220
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PctI GAATGC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 61
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 1 cut(s) 80
Ple19I CGATCG 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 165
PstI CTGCAG 1 cut(s) 80
PvuI CGATCG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 3 cut(s) 188, 202, 220
Sau96I GGNCC 1 cut(s) 165
SduI GDGCHC 1 cut(s) 229
SetI ASST 8 cut(s) 16, 72, 83, 123, 132, 186, 229, 265
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SsiI CCGC 2 cut(s) 135, 266
SspMI CTAG 1 cut(s) 21
SstI GAGCTC 1 cut(s) 229
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 2 cut(s) 132, 265
TaqI TCGA 4 cut(s) 191, 201, 223, 253
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 113
Vha464I CTTAAG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 1 cut(s) 21
ZraI GACGTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.