Rmu_sc0004143.1_g000013

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004143.1
OG0018411
Physical Location & Seq
Reverse (-)
69949 .. 70314
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004143.1_g000013.1.cds

Sequence Viewer

Length: 366 bp
atggcaagtcgcccaggccatgaaagaaccacctctgactctctctttctaatgacctccatgaaagaaccacctctctctagttgcaaaaagcctactaccaaccacacccagcccaagaatcttaagctcgtctgcagcttcaacggcgcattccacccacgaccaccgtctgggaagctccactacgtcggcggtgagaaccaaatcatctccatcgacctgaccattgcattctccaagctccgattgaagattttcgatctctcccccaactccggatcgagctcttgtgaaacccacgcttcaacttcgactacgacgtccgacgtatggttgagactcgagagagagccgaagagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

121

Amino Acids

13.33

Weight (kDa)

9.37

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018411)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00931
rosa_laevigata RLG00000023083
rosa_multiflora Rmu_sc0001142.1_g000003 Rmu_sc0004143.1_g000013 Rmu_sc0007358.1_g000011
rosa_roxburghii Rroxscaffold_5G00371990 Rroxscaffold_7G00177740
rosa_samantha Rh1DG055600 Rh2CG269700 Rh5DG562600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 322
AatII GACGTC 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 173
AccIII TCCGGA 1 cut(s) 278
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 289
AcyI GRCGYC 1 cut(s) 323
AfiI CCNNNNNNNGG 3 cut(s) 173, 278, 333
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 3 cut(s) 145, 253, 309
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 5 cut(s) 130, 141, 181, 244, 288
AluI AGCT 5 cut(s) 130, 141, 181, 244, 288
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 344
Aor13HI TCCGGA 1 cut(s) 278
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 344
BanII GRGCYC 1 cut(s) 290
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
Bbv12I GWGCWC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 150
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 136
BfrI CTTAAG 1 cut(s) 125
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 15
BoxI GACNNNNGTC 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 278, 333
Bse3DI GCAATG 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 278
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 3 cut(s) 173, 278, 333
BseMI GCAATG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 150
BseYI CCCAGC 1 cut(s) 111
BshFI GGCC 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 3 cut(s) 173, 278, 333
BsmAI GTCTC 1 cut(s) 334
BsmI GAATGC 2 cut(s) 152, 233
BsnI GGCC 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 290
Bsp13I TCCGGA 1 cut(s) 278
Bsp143I GATC 2 cut(s) 262, 281
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 18
BspEI TCCGGA 1 cut(s) 278
BspMAI CTGCAG 1 cut(s) 140
BspPI GGATC 1 cut(s) 289
BspTI CTTAAG 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 2 cut(s) 262, 281
BssNI GRCGYC 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 323
BstAFI CTTAAG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 2 cut(s) 265, 284
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 2 cut(s) 262, 281
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 15
BstPAI GACNNNNGTC 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 18
CfoI GCGC 1 cut(s) 152
CviAII CATG 2 cut(s) 20, 61
CviJI RGCY 9 cut(s) 18, 94, 115, 130, 141, 181, 244, 288, 355
CviKI_1 RGCY 9 cut(s) 18, 94, 115, 130, 141, 181, 244, 288, 355
DpnI GATC 2 cut(s) 264, 283
DpnII GATC 2 cut(s) 262, 281
DrdI GACNNNNNNGTC 1 cut(s) 322
DseDI GACNNNNNNGTC 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Ecl136II GAGCTC 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 2 cut(s) 23, 64
FaiI YATR 3 cut(s) 21, 62, 334
FatI CATG 2 cut(s) 19, 60
Fnu4HI GCNGC 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 139
GsaI CCCAGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 18
HapII CCGG 1 cut(s) 279
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 2 cut(s) 23, 64
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 3 cut(s) 38, 121, 342
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 3 cut(s) 37, 248, 328
Hpy188III TCNNGA 2 cut(s) 279, 346
Hpy99I CGWCG 3 cut(s) 194, 325, 332
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 3 cut(s) 189, 323, 330
HpyCH4V TGCA 3 cut(s) 87, 138, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpySE526I ACGT 3 cut(s) 189, 323, 330
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 2 cut(s) 23, 64
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 278
Kzo9I GATC 2 cut(s) 262, 281
LmnI GCTCC 2 cut(s) 186, 249
LpnPI CCDG 5 cut(s) 27, 125, 159, 236, 292
Lsp1109I GCAGC 1 cut(s) 150
MaeI CTAG 1 cut(s) 81
MaeII ACGT 3 cut(s) 189, 323, 330
MalI GATC 2 cut(s) 264, 283
MboI GATC 2 cut(s) 262, 281
MboII GAAGA 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 290
MlyI GAGTC 2 cut(s) 32, 336
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 3 cut(s) 43, 67, 84
MroI TCCGGA 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 1 cut(s) 126
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 15
Mva1269I GAATGC 2 cut(s) 152, 233
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 147
NdeII GATC 2 cut(s) 262, 281
NlaIII CATG 2 cut(s) 23, 64
PaeR7I CTCGAG 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PctI GAATGC 2 cut(s) 152, 233
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 1 cut(s) 140
PleI GAGTC 2 cut(s) 32, 336
PpsI GAGTC 2 cut(s) 32, 336
PshAI GACNNNNGTC 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 1 cut(s) 13
PstI CTGCAG 1 cut(s) 140
SacI GAGCTC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 2 cut(s) 262, 281
SchI GAGTC 2 cut(s) 32, 336
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 1 cut(s) 290
SfcI CTRYAG 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 344
SlaI CTCGAG 1 cut(s) 344
SmlI CTYRAG 2 cut(s) 125, 344
SmoI CTYRAG 2 cut(s) 125, 344
SsiI CCGC 1 cut(s) 195
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 3 cut(s) 192, 326, 333
TaqI TCGA 5 cut(s) 219, 261, 284, 314, 345
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 36, 77
Van91I CCANNNNNTGG 1 cut(s) 173
Vha464I CTTAAG 1 cut(s) 125
XhoI CTCGAG 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 81
ZraI GACGTC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.