FvH4_4g01810
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009607
Physical Location & Seq
Reverse (-)
1582810 .. 1585209
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01810.t1

Sequence Viewer

Length: 552 bp
ATGGGGGCATTCATATCCAAGTTTTGGTTCATGTTGTTTCCTGCAAAGGAGTATAAGATTGTGGTGGTTGGGTTGGACAATGCTGGGAAGACAACTACTCTTTACAAATTACACTTGGGAGAGGTTGTCACTACGAATCCGACTGTGGGCAGCAATGTCGAAGAGCTTGTCTACAAGAACATTCGCTTTGAGGTGTGGGATCTTGGTGGGCAAGATAGACTGAGGACTTCTTGGGCAACATACTACCGTGGAACTCATGCCATCATTGTGGTAATAGACAGCACTGACAGGGCCAGAATTTCTATCATGAAGGATGAACTCTTCAGGTTGCTTGGACATGAGGATCTTCAACATTCAGTTGTACTGGTTTTTGCTAATAAACAAGATCTCAAGGATGCCATGACCCCAGCTGAGATCACTGACACTCTATCTCTTCACAGCATTAAGAATCATGACTGGCACATCCAAGCATGTTGCGCCCTCAATGGAGATGGGTTGTATGATGGCCTAGGTTGGATTGCCTCACGAGTTACCGGGAAAACACCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

184

Amino Acids

20.57

Weight (kDa)

6.37

Isoelectric Point (pI)

25.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 13 - 175 4.9e-66 ADP-ribosylation factor family
SRPRB PF09439 18 - 143 5.9e-11 Signal recognition particle receptor beta subunit
Roc PF08477 19 - 129 6.2e-14 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 19 - 133 9.6e-12 Ras family
MMR_HSR1 PF01926 19 - 123 7.4e-06 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 24
AccI GTMKAC 1 cut(s) 171
AclWI GGATC 2 cut(s) 207, 351
AcsI RAATTY 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 307
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 24, 146
AgsI TTSAA 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 2 cut(s) 166, 410
AluI AGCT 2 cut(s) 166, 410
AlwI GGATC 2 cut(s) 207, 351
AoxI GGCC 2 cut(s) 291, 505
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 297
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AspA2I CCTAGG 1 cut(s) 508
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 535
AvrII CCTAGG 1 cut(s) 508
BauI CACGAG 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 162
BccI CCATC 3 cut(s) 269, 485, 497
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BcnI CCSGG 1 cut(s) 535
BfaI CTAG 1 cut(s) 509
BglII AGATCT 1 cut(s) 385
BisI GCNGC 1 cut(s) 151
BlnI CCTAGG 1 cut(s) 508
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 535
BmgT120I GGNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 535
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 535
BsaJI CCNNGG 2 cut(s) 247, 508
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 146
Bse1I ACTGG 3 cut(s) 369, 461, 546
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 2 cut(s) 247, 508
BseGI GGATG 3 cut(s) 319, 400, 462
BseLI CCNNNNNNNGG 2 cut(s) 24, 146
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 2 cut(s) 212, 402
BseNI ACTGG 3 cut(s) 369, 461, 546
BseXI GCAGC 1 cut(s) 162
BseYI CCCAGC 2 cut(s) 83, 406
BshFI GGCC 2 cut(s) 293, 507
BsiSI CCGG 1 cut(s) 534
BslI CCNNNNNNNGG 2 cut(s) 24, 146
BsmI GAATGC 1 cut(s) 8
BsnI GGCC 2 cut(s) 293, 507
Bsp143I GATC 4 cut(s) 199, 343, 385, 414
BspANI GGCC 2 cut(s) 293, 507
BspCNI CTCAG 2 cut(s) 213, 403
BspHI TCATGA 2 cut(s) 306, 451
BspPI GGATC 2 cut(s) 207, 351
BspQI GCTCTTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 3 cut(s) 369, 461, 546
BssECI CCNNGG 2 cut(s) 247, 508
BssMI GATC 4 cut(s) 199, 343, 385, 414
BssSI CACGAG 1 cut(s) 525
BssT1I CCWWGG 1 cut(s) 508
Bst2BI CACGAG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 145, 248
Bst6I CTCTTC 3 cut(s) 156, 326, 438
BstDEI CTNAG 2 cut(s) 221, 411
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 3 cut(s) 319, 400, 462
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 4 cut(s) 202, 346, 388, 417
BstMBI GATC 4 cut(s) 199, 343, 385, 414
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNSI RCATGY 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 533
BstV1I GCAGC 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 3 cut(s) 199, 343, 385
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 3 cut(s) 199, 343, 385
BsuRI GGCC 2 cut(s) 293, 507
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 3 cut(s) 319, 400, 462
BtsIMutI CAGTG 2 cut(s) 282, 417
CciI TCATGA 2 cut(s) 306, 451
CfoI GCGC 1 cut(s) 479
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 362
CviAII CATG 7 cut(s) 31, 257, 307, 338, 400, 452, 471
CviJI RGCY 4 cut(s) 166, 293, 410, 507
CviKI_1 RGCY 4 cut(s) 166, 293, 410, 507
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 2 cut(s) 221, 411
DpnI GATC 4 cut(s) 201, 345, 387, 416
DpnII GATC 4 cut(s) 199, 343, 385, 414
Eam1104I CTCTTC 3 cut(s) 156, 326, 438
EarI CTCTTC 3 cut(s) 156, 326, 438
Eco130I CCWWGG 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 7 cut(s) 34, 260, 310, 341, 403, 455, 474
FatI CATG 7 cut(s) 30, 256, 306, 337, 399, 451, 470
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 3 cut(s) 326, 407, 449
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 1 cut(s) 509
GlaI GCGC 1 cut(s) 478
GluI GCNGC 1 cut(s) 151
GsaI CCCAGC 2 cut(s) 87, 410
HaeIII GGCC 2 cut(s) 293, 507
HapII CCGG 1 cut(s) 534
HhaI GCGC 1 cut(s) 479
Hin1II CATG 7 cut(s) 34, 260, 310, 341, 403, 455, 474
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HinfI GANTC 2 cut(s) 136, 448
HpaII CCGG 1 cut(s) 534
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 3 cut(s) 307, 452, 525
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 2 cut(s) 145, 248
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 2 cut(s) 221, 411
Hsp92II CATG 7 cut(s) 34, 260, 310, 341, 403, 455, 474
HspAI GCGC 1 cut(s) 477
Kzo9I GATC 4 cut(s) 199, 343, 385, 414
LguI GCTCTTC 1 cut(s) 156
LpnPI CCDG 9 cut(s) 54, 69, 274, 307, 310, 350, 420, 442, 547
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 509
MaeIII GTNAC 2 cut(s) 127, 529
MalI GATC 4 cut(s) 201, 345, 387, 416
MboI GATC 4 cut(s) 199, 343, 385, 414
MboII GAAGA 5 cut(s) 100, 173, 313, 338, 425
MflI RGATCY 3 cut(s) 199, 343, 385
MluCI AATT 2 cut(s) 107, 297
MmeI TCCRAC 3 cut(s) 54, 164, 494
MnlI CCTC 6 cut(s) 115, 184, 216, 334, 491, 532
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 1 cut(s) 534
MspR9I CCNGG 1 cut(s) 535
Mva1269I GAATGC 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 476
NciI CCSGG 1 cut(s) 535
NdeII GATC 4 cut(s) 199, 343, 385, 414
NlaIII CATG 7 cut(s) 34, 260, 310, 341, 403, 455, 474
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 1 cut(s) 474
PagI TCATGA 2 cut(s) 306, 451
PciSI GCTCTTC 1 cut(s) 156
PctI GAATGC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 136, 448
PflMI CCANNNNNTGG 1 cut(s) 24
PkrI GCNGC 1 cut(s) 152
PspFI CCCAGC 2 cut(s) 83, 406
PspPI GGNCC 1 cut(s) 291
PsuI RGATCY 3 cut(s) 199, 343, 385
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 4 cut(s) 199, 343, 385, 414
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 535
SetI ASST 6 cut(s) 126, 168, 195, 329, 412, 514
SfaNI GCATC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 2 cut(s) 107, 297
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 1 cut(s) 533
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 145, 248
TaqI TCGA 1 cut(s) 159
TasI AATT 2 cut(s) 107, 297
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 2 cut(s) 136, 448
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 2 cut(s) 289, 424
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 3 cut(s) 19, 323, 330
TspRI CASTG 2 cut(s) 289, 424
Van91I CCANNNNNTGG 1 cut(s) 24
XapI RAATTY 1 cut(s) 297
XceI RCATGY 1 cut(s) 474
XmaJI CCTAGG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.