Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009607

Physical Location & Seq

Genomic Coordinates Forward (+)

34626369 .. 34626860

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0320500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCAAAGATCAGGGCTTGTTGGTAATGGTAATGGTACCAATTGGAAATCTGAGGATCAGTATATTAACATGAACAACAAGTACTCTAACATTTGTCAAAGGGTTTCTTCTGCATTTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGAGCAGATAGGGAGCTATGGTGGTTATGGACCTATGAACATGGAGAAGAGTTTTAGGGATTGTTCAATCTCAGCTGGAAGGGGAACTAGTTCTACTGGTGTTGGTGGATCCATTAGTCACAATTTTGGGTCATGGGTCGGCTGCAGTGTTGACCCATATTTCTCCTCATCCTACACTACTAGTACTAGTACTACTTTCTTTGACATGAATGAAGAACAAACTTTTATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTCCACTGTTCCCCATGCACGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

163

Amino Acids

17.55

Weight (kDa)

4.7

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22950 AT3G22950
fragaria_vesca	FvH4_4g01810
malus_domestica	MD13G1202300.v1.1 MD16G1202500.v1.1
prunus_persica	Prupe.1G024100_v2.0.a1 Prupe.1G024100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0388851 RchiOBHm_Chr7g0214171 RchiOBHm_Chr7g0214281
rosa_laevigata	RLG00000002753 RLG00000010020
rosa_multiflora	Rmu_co8509249.1_g000002 Rmu_sc0000697.1_g000009 Rmu_sc0016023.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335130
rosa_rugosa	Rorug03G0320500
rosa_samantha	Rh4AG025100 Rh4BG018200 Rh4CG028000 Rh4DG018800
rosa_wichuraiana	Rw4G001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	3 cut(s)	63, 255, 268
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	4 cut(s)	37, 83, 337, 343
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	2 cut(s)	219, 413
AhlI	ACTAGT	3 cut(s)	239, 332, 338
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	3 cut(s)	134, 168, 227
AluI	AGCT	3 cut(s)	134, 168, 227
AlwI	GGATC	3 cut(s)	63, 255, 268
ApeKI	GCWGC	1 cut(s)	294
Asp700I	GAANNNNTTC	2 cut(s)	241, 417
Asp718I	GGTACC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	392, 452
AvaII	GGWCC	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	404
BcuI	ACTAGT	3 cut(s)	239, 332, 338
BfaI	CTAG	3 cut(s)	240, 333, 339
BfmI	CTRYAG	1 cut(s)	295
BisI	GCNGC	2 cut(s)	295, 487
BlsI	GCNGC	2 cut(s)	296, 488
BmcAI	AGTACT	3 cut(s)	83, 337, 343
Bme1390I	CCNGG	1 cut(s)	404
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	37, 262
BmrFI	CCNGG	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	474
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	42, 237
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	2 cut(s)	307, 405
BseXI	GCAGC	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	437
Bsp143I	GATC	4 cut(s)	8, 55, 260, 397
BspACI	CCGC	1 cut(s)	486
BspCNI	CTCAG	2 cut(s)	43, 236
BspLI	GGNNCC	2 cut(s)	37, 262
BspMAI	CTGCAG	1 cut(s)	299
BspPI	GGATC	3 cut(s)	63, 255, 268
BspT107I	GGYRCC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	4 cut(s)	8, 55, 260, 397
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	426, 440
Bst6I	CTCTTC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	51, 223
BstF5I	GGATG	1 cut(s)	320
BstKTI	GATC	4 cut(s)	11, 58, 263, 400
BstMBI	GATC	4 cut(s)	8, 55, 260, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	320
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	304, 422
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	4 cut(s)	36, 82, 336, 342
CviAII	CATG	6 cut(s)	70, 193, 285, 358, 433, 460
CviJI	RGCY	6 cut(s)	16, 134, 168, 227, 294, 489
CviKI_1	RGCY	6 cut(s)	16, 134, 168, 227, 294, 489
CviQI	GTAC	4 cut(s)	36, 82, 336, 342
DdeI	CTNAG	2 cut(s)	51, 223
DpnI	GATC	4 cut(s)	10, 57, 262, 399
DpnII	GATC	4 cut(s)	8, 55, 260, 397
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	402
FaeI	CATG	6 cut(s)	73, 196, 288, 361, 436, 463
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FatI	CATG	6 cut(s)	69, 192, 284, 357, 432, 459
Fnu4HI	GCNGC	2 cut(s)	295, 487
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	295, 487
FspBI	CTAG	3 cut(s)	240, 333, 339
GluI	GCNGC	2 cut(s)	295, 487
Hin1II	CATG	6 cut(s)	73, 196, 288, 361, 436, 463
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HphI	GGTGA	2 cut(s)	392, 452
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	52, 475
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	225, 428
HpyCH4III	ACNGT	2 cut(s)	426, 440
HpyCH4V	TGCA	4 cut(s)	4, 113, 297, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	2 cut(s)	51, 223
Hsp92II	CATG	6 cut(s)	73, 196, 288, 361, 436, 463
KpnI	GGTACC	1 cut(s)	39
Kzo9I	GATC	4 cut(s)	8, 55, 260, 397
LmnI	GCTCC	1 cut(s)	165
LpnPI	CCDG	5 cut(s)	120, 213, 234, 389, 416
Lsp1109I	GCAGC	1 cut(s)	281
MaeI	CTAG	3 cut(s)	240, 333, 339
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	4 cut(s)	10, 57, 262, 399
MboI	GATC	4 cut(s)	8, 55, 260, 397
MboII	GAAGA	6 cut(s)	99, 120, 211, 377, 407, 475
MfeI	CAATTG	1 cut(s)	40
MflI	RGATCY	1 cut(s)	260
MluCI	AATT	2 cut(s)	40, 274
MnlI	CCTC	6 cut(s)	46, 328, 383, 436, 469, 473
MroXI	GAANNNNTTC	2 cut(s)	241, 417
MseI	TTAA	2 cut(s)	66, 150
MspA1I	CMGCKG	2 cut(s)	134, 227
MspR9I	CCNGG	1 cut(s)	404
MunI	CAATTG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	4 cut(s)	8, 55, 260, 397
NlaIII	CATG	6 cut(s)	73, 196, 288, 361, 436, 463
NlaIV	GGNNCC	2 cut(s)	37, 262
NmuCI	GTSAC	1 cut(s)	269
PdmI	GAANNNNTTC	2 cut(s)	241, 417
PkrI	GCNGC	2 cut(s)	296, 488
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	37, 262
PspPI	GGNCC	1 cut(s)	182
PsrI	GAACNNNNNNTAC	4 cut(s)	65, 97, 229, 261
PstI	CTGCAG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	260
PvuII	CAGCTG	2 cut(s)	134, 227
RsaI	GTAC	4 cut(s)	37, 83, 337, 343
RsaNI	GTAC	4 cut(s)	36, 82, 336, 342
SaqAI	TTAA	2 cut(s)	66, 150
SatI	GCNGC	2 cut(s)	295, 487
Sau3AI	GATC	4 cut(s)	8, 55, 260, 397
Sau96I	GGNCC	1 cut(s)	182
ScaI	AGTACT	3 cut(s)	83, 337, 343
ScrFI	CCNGG	1 cut(s)	404
SetI	ASST	5 cut(s)	136, 170, 187, 229, 484
SfcI	CTRYAG	1 cut(s)	295
SinI	GGWCC	1 cut(s)	182
SpeI	ACTAGT	3 cut(s)	239, 332, 338
Sse9I	AATT	2 cut(s)	40, 274
SsiI	CCGC	1 cut(s)	486
SspMI	CTAG	3 cut(s)	240, 333, 339
StyD4I	CCNGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	426, 440
TasI	AATT	2 cut(s)	40, 274
TatI	WGTACW	3 cut(s)	81, 335, 341
TauI	GCSGC	1 cut(s)	489
Tru1I	TTAA	2 cut(s)	66, 150
Tru9I	TTAA	2 cut(s)	66, 150
TscAI	CASTG	2 cut(s)	304, 429
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	5 cut(s)	86, 203, 374, 378, 476
TspRI	CASTG	2 cut(s)	304, 429
VpaK11BI	GGWCC	1 cut(s)	182
XmnI	GAANNNNTTC	2 cut(s)	241, 417
XspI	CTAG	3 cut(s)	240, 333, 339
ZrmI	AGTACT	3 cut(s)	83, 337, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.