Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8509249.1

Orthogroup ID

OG0009607

Physical Location & Seq

Genomic Coordinates Forward (+)

526 .. 2243

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8509249.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgggggcgttcatatcgaggttttggttcatgttgtttcctgcaaaagagtataagattgtggtggttgggttggacaatgctgggaagacaactaccctttacaaattgcacttgggagaggttgtcactacgaacccgactgtaggcagcaatgtcgaagagcttgtctacaagaacattcgctttgaggtgtgggatctgggtggacaagatagactgaggacttcatgggcaacatactaccgtggaactcatgctatcattgtggtaatagacagcacagacagggccagaatttccattatgaaggacgaactcttcaggttgcttggacatgaggatcttcaacattcagttgtactggtttttgctaataaacaagatctcaaggatgccatgaccccagctgagatcactgacactctatctcttcacagcattaagaatcacgactggcacatccaagcctgctgtgccctcaacggggatggattgtatgatggcctaggttggattgcctcacgggttaccgggaaagcacctagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

183

Amino Acids

20.57

Weight (kDa)

6.37

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22950 AT3G22950
fragaria_vesca	FvH4_4g01810
malus_domestica	MD13G1202300.v1.1 MD16G1202500.v1.1
prunus_persica	Prupe.1G024100_v2.0.a1 Prupe.1G024100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0388851 RchiOBHm_Chr7g0214171 RchiOBHm_Chr7g0214281
rosa_laevigata	RLG00000002753 RLG00000010020
rosa_multiflora	Rmu_co8509249.1_g000002 Rmu_sc0000697.1_g000009 Rmu_sc0016023.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335130
rosa_rugosa	Rorug03G0320500
rosa_samantha	Rh4AG025100 Rh4BG018200 Rh4CG028000 Rh4DG018800
rosa_wichuraiana	Rw4G001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AclWI	GGATC	2 cut(s)	207, 351
AcsI	RAATTY	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	3 cut(s)	146, 486, 487
AgsI	TTSAA	1 cut(s)	350
AluBI	AGCT	2 cut(s)	166, 410
AluI	AGCT	2 cut(s)	166, 410
AlwI	GGATC	2 cut(s)	207, 351
AoxI	GGCC	2 cut(s)	291, 505
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	297
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AspA2I	CCTAGG	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	291
AsuC2I	CCSGG	1 cut(s)	535
AvrII	CCTAGG	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	485, 497
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BcnI	CCSGG	1 cut(s)	535
BfaI	CTAG	2 cut(s)	509, 546
BfmI	CTRYAG	1 cut(s)	144
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	1 cut(s)	151
BlnI	CCTAGG	1 cut(s)	508
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	535
BmgT120I	GGNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	247, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 486, 487
Bse1I	ACTGG	2 cut(s)	369, 461
Bse3DI	GCAATG	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	247, 508
BseGI	GGATG	3 cut(s)	400, 462, 496
BseLI	CCNNNNNNNGG	3 cut(s)	146, 486, 487
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	212, 402
BseNI	ACTGG	2 cut(s)	369, 461
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	1 cut(s)	162
BseYI	CCCAGC	2 cut(s)	83, 406
BshFI	GGCC	2 cut(s)	293, 507
BsiSI	CCGG	1 cut(s)	534
BslI	CCNNNNNNNGG	3 cut(s)	146, 486, 487
BsnI	GGCC	2 cut(s)	293, 507
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	4 cut(s)	199, 343, 385, 414
BspANI	GGCC	2 cut(s)	293, 507
BspCNI	CTCAG	2 cut(s)	213, 403
BspPI	GGATC	2 cut(s)	207, 351
BspQI	GCTCTTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	369, 461
BssECI	CCNNGG	2 cut(s)	247, 508
BssMI	GATC	4 cut(s)	199, 343, 385, 414
BssT1I	CCWWGG	1 cut(s)	508
Bst4CI	ACNGT	2 cut(s)	145, 248
Bst6I	CTCTTC	3 cut(s)	156, 326, 438
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	2 cut(s)	221, 411
BstDSI	CCRYGG	1 cut(s)	247
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	3 cut(s)	400, 462, 496
BstKTI	GATC	4 cut(s)	202, 346, 388, 417
BstMBI	GATC	4 cut(s)	199, 343, 385, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	481
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	3 cut(s)	199, 343, 385
BstYI	RGATCY	3 cut(s)	199, 343, 385
BsuRI	GGCC	2 cut(s)	293, 507
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	3 cut(s)	400, 462, 496
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	5 cut(s)	31, 231, 257, 338, 400
CviJI	RGCY	5 cut(s)	166, 293, 410, 470, 507
CviKI_1	RGCY	5 cut(s)	166, 293, 410, 470, 507
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	2 cut(s)	221, 411
DpnI	GATC	4 cut(s)	201, 345, 387, 416
DpnII	GATC	4 cut(s)	199, 343, 385, 414
Eam1104I	CTCTTC	3 cut(s)	156, 326, 438
EarI	CTCTTC	3 cut(s)	156, 326, 438
Eco130I	CCWWGG	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	307
Eco91I	GGTNACC	1 cut(s)	529
EcoO65I	GGTNACC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	5 cut(s)	34, 234, 260, 341, 403
FatI	CATG	5 cut(s)	30, 230, 256, 337, 399
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	3 cut(s)	407, 449, 503
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	2 cut(s)	509, 546
GluI	GCNGC	1 cut(s)	151
GsaI	CCCAGC	2 cut(s)	87, 410
HaeIII	GGCC	2 cut(s)	293, 507
HapII	CCGG	1 cut(s)	534
Hin1II	CATG	5 cut(s)	34, 234, 260, 341, 403
HinfI	GANTC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	534
Hpy166II	GTNNAC	2 cut(s)	172, 209
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	2 cut(s)	172, 209
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	2 cut(s)	145, 248
HpyCH4V	TGCA	2 cut(s)	44, 112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	2 cut(s)	221, 411
Hsp92II	CATG	5 cut(s)	34, 234, 260, 341, 403
Kzo9I	GATC	4 cut(s)	199, 343, 385, 414
LguI	GCTCTTC	1 cut(s)	156
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	509, 546
MaeIII	GTNAC	2 cut(s)	127, 529
MalI	GATC	4 cut(s)	201, 345, 387, 416
MboI	GATC	4 cut(s)	199, 343, 385, 414
MboII	GAAGA	5 cut(s)	100, 173, 313, 338, 425
MflI	RGATCY	3 cut(s)	199, 343, 385
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	2 cut(s)	107, 297
MmeI	TCCRAC	2 cut(s)	54, 494
MnlI	CCTC	7 cut(s)	12, 115, 184, 216, 334, 491, 532
MseI	TTAA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	535
NdeII	GATC	4 cut(s)	199, 343, 385, 414
NlaIII	CATG	5 cut(s)	34, 234, 260, 341, 403
NmuCI	GTSAC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	1 cut(s)	152
PspEI	GGTNACC	1 cut(s)	529
PspFI	CCCAGC	2 cut(s)	83, 406
PspPI	GGNCC	1 cut(s)	291
PsuI	RGATCY	3 cut(s)	199, 343, 385
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	4 cut(s)	199, 343, 385, 414
Sau96I	GGNCC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	1 cut(s)	481
SetI	ASST	8 cut(s)	23, 126, 168, 195, 329, 412, 514, 547
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	2 cut(s)	107, 297
SspMI	CTAG	2 cut(s)	509, 546
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	2 cut(s)	145, 248
TaqI	TCGA	2 cut(s)	17, 159
TasI	AATT	2 cut(s)	107, 297
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	19, 219, 323
TspRI	CASTG	1 cut(s)	424
XapI	RAATTY	1 cut(s)	297
XmaJI	CCTAGG	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	2 cut(s)	509, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.