Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009607

Physical Location & Seq

Genomic Coordinates Reverse (-)

1684415 .. 1687179

Gene Structure 2765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G024100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGGGCATTCATTTCGAAGTTTTGGTTCATGTTGTTCCCTGCAAAAGAGTATAAGATAGTGGTAGTTGGGTTGGATAATGCTGGTAAGACCACTACCCTTTACAAATTACATTTGGGAGAGGTTGTCACAACGAACCCAACTGTAGGCAGCAACGTGGAAGAGCTTGTATACAAGAACATTCGCTTTGAGGTATGGGATCTTGGCGGACAAGAAAGACTAAGGACTTCATGGGCAACATATTACCGTGGAACTCATGCTATCATTGCAGTAATAGACAGTACGGATAGGGCCAGGATTTCTATTATGAAAGATGAACTCTTCAGGTTGCTGGCACATGAGGATCTTCAAAATTCCGTTGTACTGGTTTTTGCAAATAAACAAGACCTCAAGGATGCCATGACCCCAGCCGAGATCACTGACACCCTTTCTCTTCACAGCATTAAGAATCATGACTGGCACATCCAAGCCTGTTGTGCCCTCACAGGAGATGGCCTGTATGATGGTCTAGGTTGGATTGCCCAGCGGGTTACAGGGAAAGCACCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

184

Amino Acids

20.55

Weight (kDa)

6.29

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22950 AT3G22950
fragaria_vesca	FvH4_4g01810
malus_domestica	MD13G1202300.v1.1 MD16G1202500.v1.1
prunus_persica	Prupe.1G024100_v2.0.a1 Prupe.1G024100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0388851 RchiOBHm_Chr7g0214171 RchiOBHm_Chr7g0214281
rosa_laevigata	RLG00000002753 RLG00000010020
rosa_multiflora	Rmu_co8509249.1_g000002 Rmu_sc0000697.1_g000009 Rmu_sc0016023.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335130
rosa_rugosa	Rorug03G0320500
rosa_samantha	Rh4AG025100 Rh4BG018200 Rh4CG028000 Rh4DG018800
rosa_wichuraiana	Rw4G001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AciI	CCGC	2 cut(s)	207, 526
AclWI	GGATC	2 cut(s)	207, 351
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	2 cut(s)	283, 363
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AlwI	GGATC	2 cut(s)	207, 351
AoxI	GGCC	2 cut(s)	291, 493
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	291
AsuII	TTCGAA	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	485, 497
BcgI	CGANNNNNNTGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	295
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	540
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	3 cut(s)	369, 461, 546
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	400, 462
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	264
BseNI	ACTGG	3 cut(s)	369, 461, 546
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	1 cut(s)	162
BseYI	CCCAGC	2 cut(s)	406, 522
BshFI	GGCC	2 cut(s)	293, 495
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	293, 495
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	3 cut(s)	199, 343, 414
BspACI	CCGC	2 cut(s)	207, 526
BspANI	GGCC	2 cut(s)	293, 495
BspHI	TCATGA	1 cut(s)	451
BspPI	GGATC	2 cut(s)	207, 351
BspQI	GCTCTTC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	3 cut(s)	369, 461, 546
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	199, 343, 414
BssNAI	GTATAC	1 cut(s)	172
Bst1107I	GTATAC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	3 cut(s)	145, 248, 281
Bst6I	CTCTTC	3 cut(s)	156, 326, 438
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	400, 462
BstKTI	GATC	3 cut(s)	202, 346, 417
BstMBI	GATC	3 cut(s)	199, 343, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 476
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	481
BstV1I	GCAGC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	199, 343
BstYI	RGATCY	2 cut(s)	199, 343
BstZ17I	GTATAC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	293, 495
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	400, 462
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	282, 362
CviAII	CATG	6 cut(s)	31, 231, 257, 338, 400, 452
CviJI	RGCY	5 cut(s)	166, 293, 410, 470, 495
CviKI_1	RGCY	5 cut(s)	166, 293, 410, 470, 495
CviQI	GTAC	2 cut(s)	282, 362
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	3 cut(s)	201, 345, 416
DpnII	GATC	3 cut(s)	199, 343, 414
Eam1104I	CTCTTC	3 cut(s)	156, 326, 438
EarI	CTCTTC	3 cut(s)	156, 326, 438
EciI	GGCGGA	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	293
FaeI	CATG	6 cut(s)	34, 234, 260, 341, 403, 455
FatI	CATG	6 cut(s)	30, 230, 256, 337, 399, 451
FauI	CCCGC	1 cut(s)	519
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	2 cut(s)	407, 449
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	1 cut(s)	151
GsaI	CCCAGC	2 cut(s)	410, 526
HaeIII	GGCC	2 cut(s)	293, 495
Hin1II	CATG	6 cut(s)	34, 234, 260, 341, 403, 455
HinfI	GANTC	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	1 cut(s)	172
HpyCH4III	ACNGT	3 cut(s)	145, 248, 281
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	44, 269, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 476
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	6 cut(s)	34, 234, 260, 341, 403, 455
Kzo9I	GATC	3 cut(s)	199, 343, 414
LguI	GCTCTTC	1 cut(s)	156
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	127, 529
MalI	GATC	3 cut(s)	201, 345, 416
MboI	GATC	3 cut(s)	199, 343, 414
MboII	GAAGA	4 cut(s)	173, 313, 338, 425
MflI	RGATCY	2 cut(s)	199, 343
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	2 cut(s)	107, 352
MmeI	TCCRAC	2 cut(s)	54, 494
MnlI	CCTC	5 cut(s)	115, 184, 334, 398, 491
MseI	TTAA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	526
MspR9I	CCNGG	1 cut(s)	295
Mva1269I	GAATGC	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	2 cut(s)	266, 476
NdeII	GATC	3 cut(s)	199, 343, 414
NlaIII	CATG	6 cut(s)	34, 234, 260, 341, 403, 455
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	17
PagI	TCATGA	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	156
PctI	GAATGC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	293
PspFI	CCCAGC	2 cut(s)	406, 522
PspGI	CCWGG	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	291
PsuI	RGATCY	2 cut(s)	199, 343
RsaI	GTAC	2 cut(s)	283, 363
RsaNI	GTAC	2 cut(s)	282, 362
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	3 cut(s)	199, 343, 414
Sau96I	GGNCC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	481
SetI	ASST	7 cut(s)	126, 159, 168, 195, 329, 390, 514
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	2 cut(s)	107, 352
SsiI	CCGC	2 cut(s)	207, 526
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	293
TaaI	ACNGT	3 cut(s)	145, 248, 281
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	107, 352
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	4 cut(s)	19, 219, 323, 330
TspGWI	ACGGA	2 cut(s)	299, 346
TspRI	CASTG	1 cut(s)	424
XapI	RAATTY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.