Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014058

Physical Location & Seq

Genomic Coordinates Forward (+)

2835678 .. 2836924

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTGTACTCTGGAGAAGCGCGGCAACATCTTCTTCCTAACCCTAACCGGCGCCGGCGACTACGACGACGACAACGAGCACCGCCTTGGCCTCCCCGTCATCTCCTCCCTCCTCTCCTCCCTCGCCGACGTCGCCTCCCAATCCACCCGCGGCTCCGTCCTCATCACCACCGCCCGCGGCAAGTTCTTCTCCAACGGCTTCGACCTCGCCTGGGCCCAGTCCGCCGGCCCCTCCTCCGCCCTCCACCGCCTCCACCAGATGGTCATCGCCTTCAAGCCCGTCGTCGCCGCCCTCCTCTCCCTCCCCATGCCCACCATCGCCGCCCTCCCCGGCCACGCCGCCGCCGCCGGCCTCCTCCTCGCCCTCAGCCACGACTACGTCACCATGCGCGGCGATCGCGGCGTGCTCTACATGAGCGAGGTCGACCTGGGGCTGCCGCTGCCGGACTACTTCGTGGCGGCGTTCCGGGCCAAGATCGGGTCGAACTCGGCCCGGAGGAACATCCTGCTGAGGGGGATGAAGGTGAGGGGAGAGGAAGCGGTGAGGATGGGGATCGTGGAATCGGCGCACGAGAGCGCCGAGGCGGCGGTGGAGGCGGCGGTGCAGATGGCGGAGAAGCTGGGGGAGAGGAAATGGAAAGGTGACGTGTACGCTGAGATCAGGATGAGCTTGTACCCGGAGCTATGTGCGGTGCTGGGATTGGCTAAAGTCGTCCCTACCGCAAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004165 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010243 GO:0010817 GO:0014070 GO:0016042 GO:0016049 GO:0016054 GO:0016853 GO:0016860 GO:0016863 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0072329 GO:0080024 GO:0080026 GO:0080147 GO:0080167 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901564 GO:1901575 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 ko04626 map00062 map01110 map04626

Pfam Domains

Protein Families

ECH_1

Protein Analysis

244

Amino Acids

26.02

Weight (kDa)

7.81

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	29 - 202	1.4e-06	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	34 - 209	1e-19	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14430 AT4G14440
fragaria_vesca	FvH4_4g03200
malus_domestica	MD13G1210400.v1.1
prunus_persica	Prupe.1G034900_v2.0.a1
pyrus_communis	pycom13g18290
rosa_chinensis	RchiOBHm_Chr4g0391851
rosa_laevigata	RLG00000009854
rosa_multiflora	Rmu_sc0000383.1_g000017 Rmu_sc0007693.1_g000007
rosa_roxburghii	Rroxscaffold_5G00337180
rosa_rugosa	Rorug03G0336500
rosa_samantha	Rh4AG038900 Rh4BG033500 Rh4CG041500 Rh4DG036400
rosa_wichuraiana	Rw4G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	5 cut(s)	21, 150, 177, 390, 399
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	1 cut(s)	331
AcyI	GRCGYC	2 cut(s)	51, 129
AfaI	GTAC	3 cut(s)	7, 650, 674
AfiI	CCNNNNNNNGG	4 cut(s)	211, 259, 477, 511
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	2 cut(s)	209, 426
AluBI	AGCT	4 cut(s)	619, 669, 682, 727
AluI	AGCT	4 cut(s)	619, 669, 682, 727
Alw21I	GWGCWC	2 cut(s)	81, 408
AlwI	GGATC	1 cut(s)	560
AoxI	GGCC	7 cut(s)	88, 213, 226, 331, 349, 468, 489
ApaI	GGGCCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	433, 439
AsiSI	GCGATCGC	1 cut(s)	397
AspLEI	GCGC	5 cut(s)	21, 53, 390, 568, 578
AspS9I	GGNCC	5 cut(s)	213, 214, 227, 468, 490
AsuC2I	CCSGG	4 cut(s)	330, 467, 493, 677
AsuHPI	GGTGA	5 cut(s)	157, 373, 535, 553, 653
BaeGI	GKGCMC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	569
Bbv12I	GWGCWC	2 cut(s)	81, 408
BbvCI	CCTCAGC	2 cut(s)	365, 509
BbvI	GCAGC	2 cut(s)	420, 426
BccI	CCATC	4 cut(s)	253, 323, 541, 601
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	211, 428
BcnI	CCSGG	4 cut(s)	330, 467, 493, 677
BfoI	RGCGCY	2 cut(s)	54, 579
BglI	GCCNNNNNGGC	1 cut(s)	584
Bme1390I	CCNGG	6 cut(s)	211, 330, 428, 467, 493, 677
BmgBI	CACGTC	1 cut(s)	646
BmgT120I	GGNCC	5 cut(s)	213, 214, 227, 468, 490
BmiI	GGNNCC	4 cut(s)	52, 154, 215, 229
BmrFI	CCNGG	6 cut(s)	211, 330, 428, 467, 493, 677
BmrI	ACTGGG	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	32
Bpu10I	CCTNAGC	2 cut(s)	365, 509
BpuMI	CCSGG	4 cut(s)	330, 467, 493, 677
BsaBI	GATNNNNATC	2 cut(s)	263, 551
BsaHI	GRCGYC	2 cut(s)	51, 129
BsaJI	CCNNGG	7 cut(s)	85, 148, 175, 210, 328, 427, 579
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	4 cut(s)	211, 259, 477, 511
Bse118I	RCCGGY	4 cut(s)	47, 53, 224, 347
Bse1I	ACTGG	1 cut(s)	217
Bse8I	GATNNNNATC	2 cut(s)	263, 551
BseBI	CCWGG	2 cut(s)	211, 428
BseDI	CCNNGG	7 cut(s)	85, 148, 175, 210, 328, 427, 579
BseGI	GGATG	4 cut(s)	501, 522, 552, 669
BseJI	GATNNNNATC	2 cut(s)	263, 551
BseLI	CCNNNNNNNGG	4 cut(s)	211, 259, 477, 511
BseMII	CTCAG	3 cut(s)	379, 500, 645
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	7 cut(s)	94, 101, 106, 223, 284, 344, 347
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	420, 426
BseYI	CCCAGC	2 cut(s)	619, 694
BsgI	GTGCAG	1 cut(s)	623
Bsh1236I	CGCG	5 cut(s)	21, 150, 177, 390, 399
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	7 cut(s)	90, 215, 228, 333, 351, 470, 491
BshNI	GGYRCC	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	2 cut(s)	81, 408
BsiSI	CCGG	9 cut(s)	48, 54, 225, 330, 348, 443, 466, 493, 677
BslFI	GGGAC	1 cut(s)	698
BslI	CCNNNNNNNGG	4 cut(s)	211, 259, 477, 511
BsmFI	GGGAC	1 cut(s)	698
BsnI	GGCC	7 cut(s)	90, 215, 228, 333, 351, 470, 491
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	3 cut(s)	81, 217, 408
Bsp143I	GATC	4 cut(s)	394, 474, 552, 657
BspANI	GGCC	7 cut(s)	90, 215, 228, 333, 351, 470, 491
BspCNI	CTCAG	3 cut(s)	378, 501, 646
BspFNI	CGCG	5 cut(s)	21, 150, 177, 390, 399
BspLI	GGNNCC	4 cut(s)	52, 154, 215, 229
BspPI	GGATC	1 cut(s)	560
BspT107I	GGYRCC	1 cut(s)	50
BsrFI	RCCGGY	4 cut(s)	47, 53, 224, 347
BsrI	ACTGG	1 cut(s)	217
BssAI	RCCGGY	4 cut(s)	47, 53, 224, 347
BssECI	CCNNGG	7 cut(s)	85, 148, 175, 210, 328, 427, 579
BssMI	GATC	4 cut(s)	394, 474, 552, 657
BssNI	GRCGYC	2 cut(s)	51, 129
BssSI	CACGAG	1 cut(s)	569
BssT1I	CCWWGG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	569
Bst2UI	CCWGG	2 cut(s)	211, 428
BstACI	GRCGYC	2 cut(s)	51, 129
BstC8I	GCNNGC	5 cut(s)	55, 175, 226, 349, 404
BstDEI	CTNAG	3 cut(s)	365, 509, 654
BstDSI	CCRYGG	2 cut(s)	148, 175
BstF5I	GGATG	4 cut(s)	501, 522, 552, 669
BstFNI	CGCG	5 cut(s)	21, 150, 177, 390, 399
BstH2I	RGCGCY	2 cut(s)	54, 579
BstHHI	GCGC	5 cut(s)	21, 53, 390, 568, 578
BstKTI	GATC	4 cut(s)	397, 477, 555, 660
BstMBI	GATC	4 cut(s)	394, 474, 552, 657
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	9 cut(s)	131, 221, 344, 396, 399, 439, 467, 584, 593
BstNI	CCWGG	2 cut(s)	211, 428
BstSCI	CCNGG	6 cut(s)	209, 328, 426, 465, 491, 675
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	5 cut(s)	21, 150, 177, 390, 399
BstV1I	GCAGC	2 cut(s)	420, 426
BsuRI	GGCC	7 cut(s)	90, 215, 228, 333, 351, 470, 491
BtgI	CCRYGG	2 cut(s)	148, 175
BtgZI	GCGATG	2 cut(s)	250, 301
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	4 cut(s)	501, 522, 552, 669
Cac8I	GCNNGC	5 cut(s)	55, 175, 226, 349, 404
CfoI	GCGC	5 cut(s)	21, 53, 390, 568, 578
Cfr10I	RCCGGY	4 cut(s)	47, 53, 224, 347
Cfr13I	GGNCC	5 cut(s)	213, 214, 227, 468, 490
Cfr42I	CCGCGG	2 cut(s)	151, 178
Csp6I	GTAC	3 cut(s)	6, 649, 673
CviAII	CATG	3 cut(s)	307, 385, 412
CviQI	GTAC	3 cut(s)	6, 649, 673
DdeI	CTNAG	3 cut(s)	365, 509, 654
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	4 cut(s)	396, 476, 554, 659
DpnII	GATC	4 cut(s)	394, 474, 552, 657
EaeI	YGGCCR	1 cut(s)	331
EciI	GGCGGA	3 cut(s)	211, 226, 626
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	209, 426
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	217
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	3 cut(s)	310, 388, 415
FaiI	YATR	4 cut(s)	308, 386, 413, 685
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	3 cut(s)	306, 384, 411
FauI	CCCGC	2 cut(s)	155, 182
FblI	GTMKAC	1 cut(s)	423
FokI	GGATG	4 cut(s)	488, 529, 559, 676
FriOI	GRGCYC	1 cut(s)	217
GlaI	GCGC	5 cut(s)	20, 52, 389, 567, 577
GsaI	CCCAGC	2 cut(s)	623, 698
GsuI	CTGGAG	1 cut(s)	32
HaeII	RGCGCY	2 cut(s)	54, 579
HaeIII	GGCC	7 cut(s)	90, 215, 228, 333, 351, 470, 491
HapII	CCGG	9 cut(s)	48, 54, 225, 330, 348, 443, 466, 493, 677
HhaI	GCGC	5 cut(s)	21, 53, 390, 568, 578
Hin1I	GRCGYC	2 cut(s)	51, 129
Hin1II	CATG	3 cut(s)	310, 388, 415
Hin6I	GCGC	5 cut(s)	19, 51, 388, 566, 576
HinP1I	GCGC	5 cut(s)	19, 51, 388, 566, 576
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	1 cut(s)	560
HpaII	CCGG	9 cut(s)	48, 54, 225, 330, 348, 443, 466, 493, 677
HphI	GGTGA	5 cut(s)	157, 373, 535, 553, 653
Hpy166II	GTNNAC	3 cut(s)	6, 424, 649
Hpy188III	TCNNGA	2 cut(s)	11, 661
Hpy8I	GTNNAC	3 cut(s)	6, 424, 649
Hpy99I	CGWCG	6 cut(s)	68, 71, 131, 134, 284, 287
HpyAV	CCTTC	2 cut(s)	280, 514
HpyCH4IV	ACGT	3 cut(s)	129, 378, 645
HpyCH4V	TGCA	1 cut(s)	604
HpyF10VI	GCNNNNNNNGC	9 cut(s)	131, 221, 344, 396, 399, 439, 467, 584, 593
HpyF3I	CTNAG	3 cut(s)	365, 509, 654
HpySE526I	ACGT	3 cut(s)	129, 378, 645
Hsp92I	GRCGYC	2 cut(s)	51, 129
Hsp92II	CATG	3 cut(s)	310, 388, 415
HspAI	GCGC	5 cut(s)	19, 51, 388, 566, 576
KasI	GGCGCC	1 cut(s)	50
KroI	GCCGGC	3 cut(s)	53, 224, 347
KroNI	GCCGGC	3 cut(s)	55, 226, 349
KspI	CCGCGG	2 cut(s)	151, 178
Kzo9I	GATC	4 cut(s)	394, 474, 552, 657
LmnI	GCTCC	2 cut(s)	158, 679
Lsp1109I	GCAGC	2 cut(s)	420, 426
MaeII	ACGT	3 cut(s)	129, 378, 645
MaeIII	GTNAC	2 cut(s)	379, 641
MalI	GATC	4 cut(s)	396, 476, 554, 659
MboI	GATC	4 cut(s)	394, 474, 552, 657
MboII	GAAGA	3 cut(s)	22, 25, 178
MhlI	GDGCHC	3 cut(s)	81, 217, 408
Mly113I	GGCGCC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	216
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	3 cut(s)	53, 224, 347
MspA1I	CMGCKG	3 cut(s)	150, 177, 439
MspI	CCGG	9 cut(s)	48, 54, 225, 330, 348, 443, 466, 493, 677
MspR9I	CCNGG	6 cut(s)	211, 330, 428, 467, 493, 677
MvaI	CCWGG	2 cut(s)	211, 428
MvnI	CGCG	5 cut(s)	21, 150, 177, 390, 399
MwoI	GCNNNNNNNGC	9 cut(s)	131, 221, 344, 396, 399, 439, 467, 584, 593
NaeI	GCCGGC	3 cut(s)	55, 226, 349
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	4 cut(s)	330, 467, 493, 677
NdeII	GATC	4 cut(s)	394, 474, 552, 657
NgoMIV	GCCGGC	3 cut(s)	53, 224, 347
NlaIII	CATG	3 cut(s)	310, 388, 415
NlaIV	GGNNCC	4 cut(s)	52, 154, 215, 229
NmeAIII	GCCGAG	2 cut(s)	467, 604
NmuCI	GTSAC	2 cut(s)	379, 641
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 576
PdiI	GCCGGC	3 cut(s)	55, 226, 349
PfeI	GAWTC	1 cut(s)	560
PflFI	GACNNNGTC	1 cut(s)	377
PflMI	CCANNNNNTGG	1 cut(s)	259
Ple19I	CGATCG	1 cut(s)	397
PluTI	GGCGCC	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	209, 426
PspFI	CCCAGC	2 cut(s)	619, 694
PspGI	CCWGG	2 cut(s)	209, 426
PspN4I	GGNNCC	4 cut(s)	52, 154, 215, 229
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	5 cut(s)	213, 214, 227, 468, 490
PsyI	GACNNNGTC	1 cut(s)	377
PvuI	CGATCG	1 cut(s)	397
RgaI	GCGATCGC	1 cut(s)	397
RsaI	GTAC	3 cut(s)	7, 650, 674
RsaNI	GTAC	3 cut(s)	6, 649, 673
SacII	CCGCGG	2 cut(s)	151, 178
SalI	GTCGAC	1 cut(s)	422
Sau3AI	GATC	4 cut(s)	394, 474, 552, 657
Sau96I	GGNCC	5 cut(s)	213, 214, 227, 468, 490
ScrFI	CCNGG	6 cut(s)	211, 330, 428, 467, 493, 677
SduI	GDGCHC	3 cut(s)	81, 217, 408
SfaAI	GCGATCGC	1 cut(s)	397
SfoI	GGCGCC	1 cut(s)	52
Sfr303I	CCGCGG	2 cut(s)	151, 178
SgfI	GCGATCGC	1 cut(s)	397
SgrAI	CRCCGGYG	1 cut(s)	53
SgrBI	CCGCGG	2 cut(s)	151, 178
SspDI	GGCGCC	1 cut(s)	50
StyD4I	CCNGG	6 cut(s)	209, 328, 426, 465, 491, 675
StyI	CCWWGG	1 cut(s)	85
TaiI	ACGT	3 cut(s)	132, 381, 648
TaqI	TCGA	3 cut(s)	201, 423, 482
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	560
TseFI	GTSAC	2 cut(s)	379, 641
TseI	GCWGC	2 cut(s)	433, 439
Tsp45I	GTSAC	2 cut(s)	379, 641
TspDTI	ATGAA	1 cut(s)	533
TspGWI	ACGGA	1 cut(s)	145
Tth111I	GACNNNGTC	1 cut(s)	377
Van91I	CCANNNNNTGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	423
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.