Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0014058

Physical Location & Seq

Genomic Coordinates Forward (+)

8494555 .. 8496468

Gene Structure 1914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG041500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTGTACTCTAGAGAAGCGCGGCAACATCTTCTTCCTAACCCTAACCGGCGCCGGAGCCGGCGACGACGACGACGACAACGACGATCACCGCCTCGGCCTCCCCGTCATCTCCTCCCTCCTCTCCGCCCTCGCCGACGCCAAGTCCAAATCCTCCCCCGGCTCCGTCCTCATCACCACCGCCCGCGGCAAGTTCTTCTCCAACGGCTTCGACCTCGCCTGGGCCCAAACCGCCGGCTCCTCCTCCGCCGCCCTCCACCGCCTCCACCAAATGGTCGTCGCCTTCAAGCCCGTCGTCGCCGCCCTCCTCTCCCTCCCCATGCCCACCGTCGCCGCCCTCCCCGGCCACGCCGCCGCCGCCGGCCTCCTCCTCGCCATCAGCCACGACTACGTCACCATGCGGCGCGATCGCGGCGTGCTCTACATGAGCGAGGTCGACCTGGGGCTGCCGTTTCCGGACTACTTCACGGCGGCGTTCCGGGCCAAGATCGGGTCGGTCTCGGCTCGGAGGGACTTGCTGCTGAGGGGGATGAAGGTGAAGGGAGAGGAGGCGGTCAGGATGGGGATCGTGGACTCGGCGCACGATAGCGCCGAGGCGGCGGCGGAGGCGGCGGTGCGCGTGGCGGAGAAGCTGGGGGAGAGGAAGTGGAAGGGTGACGTGTACGCCGAGATTAGGATGAGCCTGTACCCGGAGCTATGTGGCGTGCTGGGATTGGAGGCCAAAGTCGTCGCCACTCCGAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004165 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010243 GO:0010817 GO:0014070 GO:0016042 GO:0016049 GO:0016054 GO:0016853 GO:0016860 GO:0016863 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0072329 GO:0080024 GO:0080026 GO:0080147 GO:0080167 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901564 GO:1901575 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 ko04626 map00062 map01110 map04626

Pfam Domains

Protein Families

ECH_1

Protein Analysis

248

Amino Acids

26.34

Weight (kDa)

7.02

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	32 - 200	1e-07	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	37 - 213	5.6e-19	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14430 AT4G14440
fragaria_vesca	FvH4_4g03200
malus_domestica	MD13G1210400.v1.1
prunus_persica	Prupe.1G034900_v2.0.a1
pyrus_communis	pycom13g18290
rosa_chinensis	RchiOBHm_Chr4g0391851
rosa_laevigata	RLG00000009854
rosa_multiflora	Rmu_sc0000383.1_g000017 Rmu_sc0007693.1_g000007
rosa_roxburghii	Rroxscaffold_5G00337180
rosa_rugosa	Rorug03G0336500
rosa_samantha	Rh4AG038900 Rh4BG033500 Rh4CG041500 Rh4DG036400
rosa_wichuraiana	Rw4G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	5 cut(s)	21, 186, 405, 411, 618
AccIII	TCCGGA	1 cut(s)	454
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	343
AcyI	GRCGYC	2 cut(s)	51, 138
AfaI	GTAC	3 cut(s)	7, 662, 686
AfiI	CCNNNNNNNGG	5 cut(s)	220, 271, 489, 672, 688
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	1 cut(s)	286
AhdI	GACNNNNNGTC	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	658
AjnI	CCWGG	2 cut(s)	218, 438
AluBI	AGCT	3 cut(s)	631, 694, 742
AluI	AGCT	3 cut(s)	631, 694, 742
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	1 cut(s)	572
Aor13HI	TCCGGA	1 cut(s)	454
AoxI	GGCC	6 cut(s)	97, 222, 343, 361, 480, 717
ApaI	GGGCCC	1 cut(s)	226
ApeKI	GCWGC	2 cut(s)	445, 517
AsiSI	GCGATCGC	1 cut(s)	409
AspLEI	GCGC	6 cut(s)	21, 53, 405, 580, 590, 618
AspS9I	GGNCC	3 cut(s)	222, 223, 480
AsuC2I	CCSGG	4 cut(s)	159, 342, 479, 689
AsuHPI	GGTGA	5 cut(s)	80, 166, 385, 547, 665
BaeGI	GKGCMC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	432, 504
BccI	CCATC	2 cut(s)	383, 553
BceAI	ACGGC	3 cut(s)	220, 433, 483
BciT130I	CCWGG	2 cut(s)	220, 440
BcnI	CCSGG	4 cut(s)	159, 342, 479, 689
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	2 cut(s)	54, 591
BglI	GCCNNNNNGGC	1 cut(s)	596
Bme1390I	CCNGG	6 cut(s)	159, 220, 342, 440, 479, 689
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	3 cut(s)	222, 223, 480
BmiI	GGNNCC	5 cut(s)	52, 58, 163, 224, 238
BmrFI	CCNGG	6 cut(s)	159, 220, 342, 440, 479, 689
Bpu10I	CCTNAGC	1 cut(s)	521
BpuMI	CCSGG	4 cut(s)	159, 342, 479, 689
BsaBI	GATNNNNATC	1 cut(s)	563
BsaHI	GRCGYC	2 cut(s)	51, 138
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	7 cut(s)	94, 157, 184, 219, 340, 439, 591
BsaWI	WCCGGW	1 cut(s)	454
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	5 cut(s)	220, 271, 489, 672, 688
Bse118I	RCCGGY	4 cut(s)	47, 59, 233, 359
Bse8I	GATNNNNATC	1 cut(s)	563
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	220, 440
BseDI	CCNNGG	7 cut(s)	94, 157, 184, 219, 340, 439, 591
BseGI	GGATG	3 cut(s)	534, 564, 681
BseJI	GATNNNNATC	1 cut(s)	563
BseLI	CCNNNNNNNGG	5 cut(s)	220, 271, 489, 672, 688
BseMII	CTCAG	1 cut(s)	512
BseRI	GAGGAG	8 cut(s)	103, 110, 229, 232, 296, 356, 359, 560
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	432, 504
BseYI	CCCAGC	2 cut(s)	631, 706
Bsh1236I	CGCG	5 cut(s)	21, 186, 405, 411, 618
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	6 cut(s)	99, 224, 345, 363, 482, 719
BshNI	GGYRCC	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	5 cut(s)	220, 271, 489, 672, 688
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	6 cut(s)	99, 224, 345, 363, 482, 719
Bso31I	GGTCTC	1 cut(s)	502
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	226, 420
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	4 cut(s)	85, 406, 486, 564
BspANI	GGCC	6 cut(s)	99, 224, 345, 363, 482, 719
BspCNI	CTCAG	1 cut(s)	513
BspEI	TCCGGA	1 cut(s)	454
BspFNI	CGCG	5 cut(s)	21, 186, 405, 411, 618
BspLI	GGNNCC	5 cut(s)	52, 58, 163, 224, 238
BspPI	GGATC	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	502
BsrFI	RCCGGY	4 cut(s)	47, 59, 233, 359
BssAI	RCCGGY	4 cut(s)	47, 59, 233, 359
BssECI	CCNNGG	7 cut(s)	94, 157, 184, 219, 340, 439, 591
BssMI	GATC	4 cut(s)	85, 406, 486, 564
BssNI	GRCGYC	2 cut(s)	51, 138
Bst2UI	CCWGG	2 cut(s)	220, 440
Bst4CI	ACNGT	1 cut(s)	328
BstACI	GRCGYC	2 cut(s)	51, 138
BstC8I	GCNNGC	6 cut(s)	61, 184, 235, 361, 416, 704
BstDEI	CTNAG	1 cut(s)	521
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	3 cut(s)	534, 564, 681
BstFNI	CGCG	5 cut(s)	21, 186, 405, 411, 618
BstH2I	RGCGCY	2 cut(s)	54, 591
BstHHI	GCGC	6 cut(s)	21, 53, 405, 580, 590, 618
BstKTI	GATC	4 cut(s)	88, 409, 489, 567
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	4 cut(s)	85, 406, 486, 564
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	7 cut(s)	230, 356, 411, 479, 596, 605, 608
BstNI	CCWGG	2 cut(s)	220, 440
BstSCI	CCNGG	6 cut(s)	157, 218, 340, 438, 477, 687
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	5 cut(s)	21, 186, 405, 411, 618
BstV1I	GCAGC	2 cut(s)	432, 504
BsuRI	GGCC	6 cut(s)	99, 224, 345, 363, 482, 719
BtgI	CCRYGG	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	3 cut(s)	534, 564, 681
Cac8I	GCNNGC	6 cut(s)	61, 184, 235, 361, 416, 704
CfoI	GCGC	6 cut(s)	21, 53, 405, 580, 590, 618
Cfr10I	RCCGGY	4 cut(s)	47, 59, 233, 359
Cfr13I	GGNCC	3 cut(s)	222, 223, 480
Cfr42I	CCGCGG	1 cut(s)	187
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	6, 661, 685
CviAII	CATG	3 cut(s)	319, 397, 424
CviQI	GTAC	3 cut(s)	6, 661, 685
DdeI	CTNAG	1 cut(s)	521
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	4 cut(s)	87, 408, 488, 566
DpnII	GATC	4 cut(s)	85, 406, 486, 564
DriI	GACNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	343
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EciI	GGCGGA	4 cut(s)	115, 235, 617, 638
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	218, 438
EcoT38I	GRGCYC	1 cut(s)	226
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaeI	CATG	3 cut(s)	322, 400, 427
FaiI	YATR	4 cut(s)	320, 398, 425, 697
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	3 cut(s)	318, 396, 423
FauI	CCCGC	1 cut(s)	191
FblI	GTMKAC	1 cut(s)	435
FokI	GGATG	3 cut(s)	541, 571, 688
FriOI	GRGCYC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	6 cut(s)	20, 52, 404, 579, 589, 617
GsaI	CCCAGC	2 cut(s)	635, 710
HaeII	RGCGCY	2 cut(s)	54, 591
HaeIII	GGCC	6 cut(s)	99, 224, 345, 363, 482, 719
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	6 cut(s)	21, 53, 405, 580, 590, 618
Hin1I	GRCGYC	2 cut(s)	51, 138
Hin1II	CATG	3 cut(s)	322, 400, 427
Hin6I	GCGC	6 cut(s)	19, 51, 403, 578, 588, 616
HinP1I	GCGC	6 cut(s)	19, 51, 403, 578, 588, 616
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	572
HphI	GGTGA	5 cut(s)	80, 166, 385, 547, 665
Hpy166II	GTNNAC	4 cut(s)	6, 436, 571, 661
Hpy188I	TCNGA	3 cut(s)	507, 738, 746
Hpy188III	TCNNGA	3 cut(s)	11, 455, 556
Hpy8I	GTNNAC	4 cut(s)	6, 436, 571, 661
HpyAV	CCTTC	4 cut(s)	292, 526, 532, 643
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	2 cut(s)	390, 657
HpyF10VI	GCNNNNNNNGC	7 cut(s)	230, 356, 411, 479, 596, 605, 608
HpyF3I	CTNAG	1 cut(s)	521
HpySE526I	ACGT	2 cut(s)	390, 657
Hsp92I	GRCGYC	2 cut(s)	51, 138
Hsp92II	CATG	3 cut(s)	322, 400, 427
HspAI	GCGC	6 cut(s)	19, 51, 403, 578, 588, 616
KasI	GGCGCC	1 cut(s)	50
Kpn2I	TCCGGA	1 cut(s)	454
KroI	GCCGGC	3 cut(s)	59, 233, 359
KroNI	GCCGGC	3 cut(s)	61, 235, 361
KspI	CCGCGG	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	85, 406, 486, 564
LmnI	GCTCC	4 cut(s)	56, 167, 242, 691
Lsp1109I	GCAGC	2 cut(s)	432, 504
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	390, 657
MaeIII	GTNAC	2 cut(s)	391, 653
MalI	GATC	4 cut(s)	87, 408, 488, 566
MboI	GATC	4 cut(s)	85, 406, 486, 564
MboII	GAAGA	3 cut(s)	22, 25, 187
MhlI	GDGCHC	2 cut(s)	226, 420
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	225
MroI	TCCGGA	1 cut(s)	454
MroNI	GCCGGC	3 cut(s)	59, 233, 359
MspA1I	CMGCKG	1 cut(s)	186
MspR9I	CCNGG	6 cut(s)	159, 220, 342, 440, 479, 689
MvaI	CCWGG	2 cut(s)	220, 440
MvnI	CGCG	5 cut(s)	21, 186, 405, 411, 618
MwoI	GCNNNNNNNGC	7 cut(s)	230, 356, 411, 479, 596, 605, 608
NaeI	GCCGGC	3 cut(s)	61, 235, 361
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	4 cut(s)	159, 342, 479, 689
NdeII	GATC	4 cut(s)	85, 406, 486, 564
NgoMIV	GCCGGC	3 cut(s)	59, 233, 359
NlaIII	CATG	3 cut(s)	322, 400, 427
NlaIV	GGNNCC	5 cut(s)	52, 58, 163, 224, 238
NmeAIII	GCCGAG	5 cut(s)	75, 479, 554, 616, 691
NmuCI	GTSAC	2 cut(s)	391, 653
PcsI	WCGNNNNNNNCGW	6 cut(s)	72, 78, 81, 102, 588, 663
PdiI	GCCGGC	3 cut(s)	61, 235, 361
PflFI	GACNNNGTC	1 cut(s)	389
PflMI	CCANNNNNTGG	1 cut(s)	271
Ple19I	CGATCG	1 cut(s)	409
PleI	GAGTC	1 cut(s)	566
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	566
Psp6I	CCWGG	2 cut(s)	218, 438
PspFI	CCCAGC	2 cut(s)	631, 706
PspGI	CCWGG	2 cut(s)	218, 438
PspN4I	GGNNCC	5 cut(s)	52, 58, 163, 224, 238
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	3 cut(s)	222, 223, 480
PsyI	GACNNNGTC	1 cut(s)	389
PvuI	CGATCG	1 cut(s)	409
RgaI	GCGATCGC	1 cut(s)	409
RsaI	GTAC	3 cut(s)	7, 662, 686
RsaNI	GTAC	3 cut(s)	6, 661, 685
SacII	CCGCGG	1 cut(s)	187
SalI	GTCGAC	1 cut(s)	434
Sau3AI	GATC	4 cut(s)	85, 406, 486, 564
Sau96I	GGNCC	3 cut(s)	222, 223, 480
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	6 cut(s)	159, 220, 342, 440, 479, 689
SduI	GDGCHC	2 cut(s)	226, 420
SetI	ASST	9 cut(s)	216, 393, 435, 441, 537, 633, 660, 696, 744
SfaAI	GCGATCGC	1 cut(s)	409
SfoI	GGCGCC	1 cut(s)	52
Sfr303I	CCGCGG	1 cut(s)	187
SgfI	GCGATCGC	1 cut(s)	409
SgrBI	CCGCGG	1 cut(s)	187
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	6 cut(s)	157, 218, 340, 438, 477, 687
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	2 cut(s)	393, 660
TaqI	TCGA	2 cut(s)	210, 435
TaqII	GACCGA	1 cut(s)	484
TatI	WGTACW	1 cut(s)	5
TseFI	GTSAC	2 cut(s)	391, 653
TseI	GCWGC	2 cut(s)	445, 517
Tsp45I	GTSAC	2 cut(s)	391, 653
TspDTI	ATGAA	1 cut(s)	545
TspGWI	ACGGA	1 cut(s)	154
Tth111I	GACNNNGTC	1 cut(s)	389
Van91I	CCANNNNNTGG	1 cut(s)	271
XbaI	TCTAGA	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.