Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000383.1

Orthogroup ID

OG0014058

Physical Location & Seq

Genomic Coordinates Reverse (-)

74423 .. 75163

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000383.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgtgtactctagagaagcgcggcaacatcttcttcctaacccttaccggcgccggagccggcgatgacgacaacgacgatcaccgcctcggcctccccgtcatctcctccctcctctccgccctcgccgacgccaagtcccaatcctcccccggctccgtcctcatcaccaccgcccgcggcaagttcttctccaacggcttcgacctcgcctgggcccaaaccgccggctcctcctccgccgccctccaccgcctccaccagatggtcgtcgccttcaagcccgtcgtcgccgccctcctctccctccccatgcccaccgtcgccgccctccccggccacgccgccgccgccggcctcctcctcgccatcagccacgactacgtcaccatgcggcgcgatcgcggcgtgctctacatgagcgaggtcgacctggggctgccgtttccggactacttcacggcggcgttccgggccaagatcgggtcggtctcggctcggagggacttgctgctgagggggatgaaggtgaagggagaggaggcggtcaggatggggatcgtggactcggcgcacgatagcgccgaggcggcggcggaggcggcggtgcgcgtggcggagaagctgggggagaggaagtggaagggtgacgtgtacgccgagattaggatgagcctgtacccggagctatgtggcgtgctgggattggaggccaaagtcgtcgccactccgaagctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004165 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010243 GO:0010817 GO:0014070 GO:0016042 GO:0016049 GO:0016054 GO:0016853 GO:0016860 GO:0016863 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0072329 GO:0080024 GO:0080026 GO:0080147 GO:0080167 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901564 GO:1901575 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 ko04626 map00062 map01110 map04626

Pfam Domains

Protein Families

ECH_1

Protein Analysis

246

Amino Acids

26.11

Weight (kDa)

7.81

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14430 AT4G14440
fragaria_vesca	FvH4_4g03200
malus_domestica	MD13G1210400.v1.1
prunus_persica	Prupe.1G034900_v2.0.a1
pyrus_communis	pycom13g18290
rosa_chinensis	RchiOBHm_Chr4g0391851
rosa_laevigata	RLG00000009854
rosa_multiflora	Rmu_sc0000383.1_g000017 Rmu_sc0007693.1_g000007
rosa_roxburghii	Rroxscaffold_5G00337180
rosa_rugosa	Rorug03G0336500
rosa_samantha	Rh4AG038900 Rh4BG033500 Rh4CG041500 Rh4DG036400
rosa_wichuraiana	Rw4G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	5 cut(s)	21, 180, 399, 405, 612
AccIII	TCCGGA	1 cut(s)	448
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	337
AcyI	GRCGYC	2 cut(s)	51, 132
AfaI	GTAC	3 cut(s)	7, 656, 680
AfiI	CCNNNNNNNGG	5 cut(s)	214, 265, 483, 666, 682
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	1 cut(s)	280
AhdI	GACNNNNNGTC	1 cut(s)	136
AjiI	CACGTC	1 cut(s)	652
AjnI	CCWGG	2 cut(s)	212, 432
AluBI	AGCT	3 cut(s)	625, 688, 736
AluI	AGCT	3 cut(s)	625, 688, 736
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	496
AlwI	GGATC	1 cut(s)	566
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	6 cut(s)	91, 216, 337, 355, 474, 711
ApaI	GGGCCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	439, 511
AsiSI	GCGATCGC	1 cut(s)	403
AspLEI	GCGC	6 cut(s)	21, 53, 399, 574, 584, 612
AspS9I	GGNCC	3 cut(s)	216, 217, 474
AsuC2I	CCSGG	4 cut(s)	153, 336, 473, 683
AsuHPI	GGTGA	5 cut(s)	74, 160, 379, 541, 659
BaeGI	GKGCMC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	414
BbvCI	CCTCAGC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	426, 498
BccI	CCATC	3 cut(s)	259, 377, 547
BceAI	ACGGC	3 cut(s)	214, 427, 477
BciT130I	CCWGG	2 cut(s)	214, 434
BcnI	CCSGG	4 cut(s)	153, 336, 473, 683
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	2 cut(s)	54, 585
BglI	GCCNNNNNGGC	1 cut(s)	590
Bme1390I	CCNGG	6 cut(s)	153, 214, 336, 434, 473, 683
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmgBI	CACGTC	1 cut(s)	652
BmgT120I	GGNCC	3 cut(s)	216, 217, 474
BmiI	GGNNCC	5 cut(s)	52, 58, 157, 218, 232
BmrFI	CCNGG	6 cut(s)	153, 214, 336, 434, 473, 683
Bpu10I	CCTNAGC	1 cut(s)	515
BpuMI	CCSGG	4 cut(s)	153, 336, 473, 683
BsaBI	GATNNNNATC	1 cut(s)	557
BsaHI	GRCGYC	2 cut(s)	51, 132
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	7 cut(s)	88, 151, 178, 213, 334, 433, 585
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 265, 483, 666, 682
Bse118I	RCCGGY	4 cut(s)	47, 59, 227, 353
Bse8I	GATNNNNATC	1 cut(s)	557
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	214, 434
BseDI	CCNNGG	7 cut(s)	88, 151, 178, 213, 334, 433, 585
BseGI	GGATG	3 cut(s)	528, 558, 675
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	5 cut(s)	214, 265, 483, 666, 682
BseMII	CTCAG	1 cut(s)	506
BseRI	GAGGAG	8 cut(s)	97, 104, 223, 226, 290, 350, 353, 554
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	426, 498
BseYI	CCCAGC	2 cut(s)	625, 700
Bsh1236I	CGCG	5 cut(s)	21, 180, 399, 405, 612
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	6 cut(s)	93, 218, 339, 357, 476, 713
BshNI	GGYRCC	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	414
BslFI	GGGAC	2 cut(s)	124, 518
BslI	CCNNNNNNNGG	5 cut(s)	214, 265, 483, 666, 682
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	2 cut(s)	124, 518
BsnI	GGCC	6 cut(s)	93, 218, 339, 357, 476, 713
Bso31I	GGTCTC	1 cut(s)	496
Bsp120I	GGGCCC	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	220, 414
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	4 cut(s)	79, 400, 480, 558
BspANI	GGCC	6 cut(s)	93, 218, 339, 357, 476, 713
BspCNI	CTCAG	1 cut(s)	507
BspEI	TCCGGA	1 cut(s)	448
BspFNI	CGCG	5 cut(s)	21, 180, 399, 405, 612
BspLI	GGNNCC	5 cut(s)	52, 58, 157, 218, 232
BspPI	GGATC	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	496
BsrFI	RCCGGY	4 cut(s)	47, 59, 227, 353
BssAI	RCCGGY	4 cut(s)	47, 59, 227, 353
BssECI	CCNNGG	7 cut(s)	88, 151, 178, 213, 334, 433, 585
BssMI	GATC	4 cut(s)	79, 400, 480, 558
BssNI	GRCGYC	2 cut(s)	51, 132
Bst2UI	CCWGG	2 cut(s)	214, 434
Bst4CI	ACNGT	1 cut(s)	322
BstACI	GRCGYC	2 cut(s)	51, 132
BstC8I	GCNNGC	6 cut(s)	61, 178, 229, 355, 410, 698
BstDEI	CTNAG	1 cut(s)	515
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	3 cut(s)	528, 558, 675
BstFNI	CGCG	5 cut(s)	21, 180, 399, 405, 612
BstH2I	RGCGCY	2 cut(s)	54, 585
BstHHI	GCGC	6 cut(s)	21, 53, 399, 574, 584, 612
BstKTI	GATC	4 cut(s)	82, 403, 483, 561
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	4 cut(s)	79, 400, 480, 558
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	7 cut(s)	224, 350, 405, 473, 590, 599, 602
BstNI	CCWGG	2 cut(s)	214, 434
BstSCI	CCNGG	6 cut(s)	151, 212, 334, 432, 471, 681
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	5 cut(s)	21, 180, 399, 405, 612
BstV1I	GCAGC	2 cut(s)	426, 498
BsuRI	GGCC	6 cut(s)	93, 218, 339, 357, 476, 713
BtgI	CCRYGG	1 cut(s)	178
BtgZI	GCGATG	1 cut(s)	78
BtrI	CACGTC	1 cut(s)	652
BtsCI	GGATG	3 cut(s)	528, 558, 675
Cac8I	GCNNGC	6 cut(s)	61, 178, 229, 355, 410, 698
CfoI	GCGC	6 cut(s)	21, 53, 399, 574, 584, 612
Cfr10I	RCCGGY	4 cut(s)	47, 59, 227, 353
Cfr13I	GGNCC	3 cut(s)	216, 217, 474
Cfr42I	CCGCGG	1 cut(s)	181
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	3 cut(s)	6, 655, 679
CviAII	CATG	3 cut(s)	313, 391, 418
CviQI	GTAC	3 cut(s)	6, 655, 679
DdeI	CTNAG	1 cut(s)	515
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	4 cut(s)	81, 402, 482, 560
DpnII	GATC	4 cut(s)	79, 400, 480, 558
DriI	GACNNNNNGTC	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	337
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EciI	GGCGGA	4 cut(s)	109, 229, 611, 632
Eco24I	GRGCYC	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	212, 432
EcoT38I	GRGCYC	1 cut(s)	220
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaeI	CATG	3 cut(s)	316, 394, 421
FaiI	YATR	4 cut(s)	314, 392, 419, 691
FaqI	GGGAC	2 cut(s)	124, 518
FatI	CATG	3 cut(s)	312, 390, 417
FauI	CCCGC	1 cut(s)	185
FblI	GTMKAC	1 cut(s)	429
FokI	GGATG	3 cut(s)	535, 565, 682
FriOI	GRGCYC	1 cut(s)	220
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	6 cut(s)	20, 52, 398, 573, 583, 611
GsaI	CCCAGC	2 cut(s)	629, 704
HaeII	RGCGCY	2 cut(s)	54, 585
HaeIII	GGCC	6 cut(s)	93, 218, 339, 357, 476, 713
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	6 cut(s)	21, 53, 399, 574, 584, 612
Hin1I	GRCGYC	2 cut(s)	51, 132
Hin1II	CATG	3 cut(s)	316, 394, 421
Hin6I	GCGC	6 cut(s)	19, 51, 397, 572, 582, 610
HinP1I	GCGC	6 cut(s)	19, 51, 397, 572, 582, 610
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	566
HphI	GGTGA	5 cut(s)	74, 160, 379, 541, 659
Hpy166II	GTNNAC	4 cut(s)	6, 430, 565, 655
Hpy188I	TCNGA	3 cut(s)	501, 732, 740
Hpy188III	TCNNGA	3 cut(s)	11, 449, 550
Hpy8I	GTNNAC	4 cut(s)	6, 430, 565, 655
Hpy99I	CGWCG	7 cut(s)	80, 134, 275, 290, 293, 326, 725
HpyAV	CCTTC	4 cut(s)	286, 520, 526, 637
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	384, 651
HpyF10VI	GCNNNNNNNGC	7 cut(s)	224, 350, 405, 473, 590, 599, 602
HpyF3I	CTNAG	1 cut(s)	515
HpySE526I	ACGT	2 cut(s)	384, 651
Hsp92I	GRCGYC	2 cut(s)	51, 132
Hsp92II	CATG	3 cut(s)	316, 394, 421
HspAI	GCGC	6 cut(s)	19, 51, 397, 572, 582, 610
KasI	GGCGCC	1 cut(s)	50
Kpn2I	TCCGGA	1 cut(s)	448
KroI	GCCGGC	3 cut(s)	59, 227, 353
KroNI	GCCGGC	3 cut(s)	61, 229, 355
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	79, 400, 480, 558
LmnI	GCTCC	4 cut(s)	56, 161, 236, 685
Lsp1109I	GCAGC	2 cut(s)	426, 498
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	384, 651
MaeIII	GTNAC	2 cut(s)	385, 647
MalI	GATC	4 cut(s)	81, 402, 482, 560
MboI	GATC	4 cut(s)	79, 400, 480, 558
MboII	GAAGA	3 cut(s)	22, 25, 181
MhlI	GDGCHC	2 cut(s)	220, 414
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	219
MroI	TCCGGA	1 cut(s)	448
MroNI	GCCGGC	3 cut(s)	59, 227, 353
MspA1I	CMGCKG	1 cut(s)	180
MspR9I	CCNGG	6 cut(s)	153, 214, 336, 434, 473, 683
MvaI	CCWGG	2 cut(s)	214, 434
MvnI	CGCG	5 cut(s)	21, 180, 399, 405, 612
MwoI	GCNNNNNNNGC	7 cut(s)	224, 350, 405, 473, 590, 599, 602
NaeI	GCCGGC	3 cut(s)	61, 229, 355
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	4 cut(s)	153, 336, 473, 683
NdeII	GATC	4 cut(s)	79, 400, 480, 558
NgoMIV	GCCGGC	3 cut(s)	59, 227, 353
NlaIII	CATG	3 cut(s)	316, 394, 421
NlaIV	GGNNCC	5 cut(s)	52, 58, 157, 218, 232
NmeAIII	GCCGAG	5 cut(s)	69, 473, 548, 610, 685
NmuCI	GTSAC	2 cut(s)	385, 647
PcsI	WCGNNNNNNNCGW	4 cut(s)	75, 96, 582, 657
PdiI	GCCGGC	3 cut(s)	61, 229, 355
PflFI	GACNNNGTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	265
Ple19I	CGATCG	1 cut(s)	403
PleI	GAGTC	1 cut(s)	560
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	212, 432
PspFI	CCCAGC	2 cut(s)	625, 700
PspGI	CCWGG	2 cut(s)	212, 432
PspN4I	GGNNCC	5 cut(s)	52, 58, 157, 218, 232
PspOMI	GGGCCC	1 cut(s)	216
PspPI	GGNCC	3 cut(s)	216, 217, 474
PsyI	GACNNNGTC	1 cut(s)	383
PvuI	CGATCG	1 cut(s)	403
RgaI	GCGATCGC	1 cut(s)	403
RsaI	GTAC	3 cut(s)	7, 656, 680
RsaNI	GTAC	3 cut(s)	6, 655, 679
SacII	CCGCGG	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	428
Sau3AI	GATC	4 cut(s)	79, 400, 480, 558
Sau96I	GGNCC	3 cut(s)	216, 217, 474
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	6 cut(s)	153, 214, 336, 434, 473, 683
SduI	GDGCHC	2 cut(s)	220, 414
SetI	ASST	9 cut(s)	210, 387, 429, 435, 531, 627, 654, 690, 738
SfaAI	GCGATCGC	1 cut(s)	403
SfoI	GGCGCC	1 cut(s)	52
Sfr303I	CCGCGG	1 cut(s)	181
SgfI	GCGATCGC	1 cut(s)	403
SgrBI	CCGCGG	1 cut(s)	181
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	6 cut(s)	151, 212, 334, 432, 471, 681
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	2 cut(s)	387, 654
TaqI	TCGA	2 cut(s)	204, 429
TaqII	GACCGA	1 cut(s)	478
TatI	WGTACW	1 cut(s)	5
TseFI	GTSAC	2 cut(s)	385, 647
TseI	GCWGC	2 cut(s)	439, 511
Tsp45I	GTSAC	2 cut(s)	385, 647
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	383
Van91I	CCANNNNNTGG	1 cut(s)	265
XbaI	TCTAGA	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.