Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014058

Physical Location & Seq

Genomic Coordinates Forward (+)

7265648 .. 7266852

Gene Structure 1205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36464

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTGTACTCTAGAGAAGCGCGGCAACATCTTCTTCCTAACCCTAACCGGCGCCGGAGCCGGCGACGACGACGACGATCACCGCCTCGGCCTCCCCGTCATCTCCTCCCTCCTCTCCGCCCTCGCCGACGCCAAGTCCCAATCCTCCCCCGGCTCCGTCCTCATCACCACCGCCCGCGGCAAGTTCTTCTCCAACGGCTTCGACCTCGCCTGGGCCCAAACCGCCGGCTCCTCCTCCGCCGCCCTCAACCGCCTCCACCAGATGGTCGTCGCCTTCAAGCCCGTCCTCGCCGCCCTCCTCTCCCTCCCCATGCCCACCGTCGCCGCCCTCCCCGGCCACGCCGCCGCCGCCGGCCTCCTCCTCGCCATCAGCCACGACTACGTCACCATGCGGCGCGATCGCGGCGTGCTCTACATGAGCGAGGTCGACCTGGGGCTGCCGTTTCCGGACTACTTCGTGGCGGCGTTCCGGGCCAAGATCGGGTCGGTCTCGGCCCGGAGGGACTTGCTGCTGAGGGGGATGAAGGTGAGGGGAGAGGAGGCGGTCAGGATGGGGATCGTGGACTCGGCGCACGATAGCGCCGAGGCGGCGGTGGAGGCGGCGGTGCGCGTGGCGGAGAAGCTGGGGGAGAGGAAGTGGAAGGGTGACGTGTACGCCGAGATTAGGATGAGCTTGTACCCGGAGCTGTGTGGCGTGCTGGGCTTGGAGGCCAAAGTCGTCGCCACTCCGAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004165 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010243 GO:0010817 GO:0014070 GO:0016042 GO:0016049 GO:0016054 GO:0016853 GO:0016860 GO:0016863 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0072329 GO:0080024 GO:0080026 GO:0080147 GO:0080167 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901564 GO:1901575 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 ko04626 map00062 map01110 map04626

Pfam Domains

Protein Families

ECH_1

Protein Analysis

245

Amino Acids

26.04

Weight (kDa)

7.8

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	29 - 198	2.7e-07	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	34 - 210	2.3e-19	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14430 AT4G14440
fragaria_vesca	FvH4_4g03200
malus_domestica	MD13G1210400.v1.1
prunus_persica	Prupe.1G034900_v2.0.a1
pyrus_communis	pycom13g18290
rosa_chinensis	RchiOBHm_Chr4g0391851
rosa_laevigata	RLG00000009854
rosa_multiflora	Rmu_sc0000383.1_g000017 Rmu_sc0007693.1_g000007
rosa_roxburghii	Rroxscaffold_5G00337180
rosa_rugosa	Rorug03G0336500
rosa_samantha	Rh4AG038900 Rh4BG033500 Rh4CG041500 Rh4DG036400
rosa_wichuraiana	Rw4G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	426
AccII	CGCG	5 cut(s)	21, 177, 396, 402, 609
AccIII	TCCGGA	1 cut(s)	445
AclWI	GGATC	1 cut(s)	563
AcoI	YGGCCR	1 cut(s)	334
AcyI	GRCGYC	2 cut(s)	51, 129
AfaI	GTAC	3 cut(s)	7, 653, 677
AfiI	CCNNNNNNNGG	4 cut(s)	211, 262, 480, 663
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	1 cut(s)	277
AhdI	GACNNNNNGTC	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	649
AjnI	CCWGG	2 cut(s)	209, 429
AluBI	AGCT	4 cut(s)	622, 672, 685, 733
AluI	AGCT	4 cut(s)	622, 672, 685, 733
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	563
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	7 cut(s)	88, 213, 334, 352, 471, 492, 708
ApaI	GGGCCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	436, 508
AsiSI	GCGATCGC	1 cut(s)	400
AspLEI	GCGC	6 cut(s)	21, 53, 396, 571, 581, 609
AspS9I	GGNCC	4 cut(s)	213, 214, 471, 493
AsuC2I	CCSGG	5 cut(s)	150, 333, 470, 496, 680
AsuHPI	GGTGA	5 cut(s)	71, 157, 376, 538, 656
BaeGI	GKGCMC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	423, 495
BccI	CCATC	3 cut(s)	256, 374, 544
BceAI	ACGGC	2 cut(s)	211, 424
BciT130I	CCWGG	2 cut(s)	211, 431
BcnI	CCSGG	5 cut(s)	150, 333, 470, 496, 680
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	2 cut(s)	54, 582
BglI	GCCNNNNNGGC	1 cut(s)	587
Bme1390I	CCNGG	7 cut(s)	150, 211, 333, 431, 470, 496, 680
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmgBI	CACGTC	1 cut(s)	649
BmgT120I	GGNCC	4 cut(s)	213, 214, 471, 493
BmiI	GGNNCC	5 cut(s)	52, 58, 154, 215, 229
BmrFI	CCNGG	7 cut(s)	150, 211, 333, 431, 470, 496, 680
Bpu10I	CCTNAGC	1 cut(s)	512
BpuMI	CCSGG	5 cut(s)	150, 333, 470, 496, 680
BsaBI	GATNNNNATC	1 cut(s)	554
BsaHI	GRCGYC	2 cut(s)	51, 129
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	7 cut(s)	85, 148, 175, 210, 331, 430, 582
BsaWI	WCCGGW	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	4 cut(s)	211, 262, 480, 663
Bse118I	RCCGGY	4 cut(s)	47, 59, 224, 350
Bse8I	GATNNNNATC	1 cut(s)	554
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	211, 431
BseDI	CCNNGG	7 cut(s)	85, 148, 175, 210, 331, 430, 582
BseGI	GGATG	3 cut(s)	525, 555, 672
BseJI	GATNNNNATC	1 cut(s)	554
BseLI	CCNNNNNNNGG	4 cut(s)	211, 262, 480, 663
BseMII	CTCAG	1 cut(s)	503
BseRI	GAGGAG	8 cut(s)	94, 101, 220, 223, 287, 347, 350, 551
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	423, 495
BseYI	CCCAGC	2 cut(s)	622, 697
Bsh1236I	CGCG	5 cut(s)	21, 177, 396, 402, 609
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	7 cut(s)	90, 215, 336, 354, 473, 494, 710
BshNI	GGYRCC	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	411
BslFI	GGGAC	2 cut(s)	121, 515
BslI	CCNNNNNNNGG	4 cut(s)	211, 262, 480, 663
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	2 cut(s)	121, 515
BsnI	GGCC	7 cut(s)	90, 215, 336, 354, 473, 494, 710
Bso31I	GGTCTC	1 cut(s)	493
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	217, 411
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	4 cut(s)	76, 397, 477, 555
BspANI	GGCC	7 cut(s)	90, 215, 336, 354, 473, 494, 710
BspCNI	CTCAG	1 cut(s)	504
BspEI	TCCGGA	1 cut(s)	445
BspFNI	CGCG	5 cut(s)	21, 177, 396, 402, 609
BspLI	GGNNCC	5 cut(s)	52, 58, 154, 215, 229
BspPI	GGATC	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	493
BsrFI	RCCGGY	4 cut(s)	47, 59, 224, 350
BssAI	RCCGGY	4 cut(s)	47, 59, 224, 350
BssECI	CCNNGG	7 cut(s)	85, 148, 175, 210, 331, 430, 582
BssMI	GATC	4 cut(s)	76, 397, 477, 555
BssNI	GRCGYC	2 cut(s)	51, 129
Bst2UI	CCWGG	2 cut(s)	211, 431
Bst4CI	ACNGT	1 cut(s)	319
BstACI	GRCGYC	2 cut(s)	51, 129
BstC8I	GCNNGC	6 cut(s)	61, 175, 226, 352, 407, 695
BstDEI	CTNAG	1 cut(s)	512
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	3 cut(s)	525, 555, 672
BstFNI	CGCG	5 cut(s)	21, 177, 396, 402, 609
BstH2I	RGCGCY	2 cut(s)	54, 582
BstHHI	GCGC	6 cut(s)	21, 53, 396, 571, 581, 609
BstKTI	GATC	4 cut(s)	79, 400, 480, 558
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	4 cut(s)	76, 397, 477, 555
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	7 cut(s)	221, 347, 402, 470, 587, 596, 699
BstNI	CCWGG	2 cut(s)	211, 431
BstSCI	CCNGG	7 cut(s)	148, 209, 331, 429, 468, 494, 678
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	5 cut(s)	21, 177, 396, 402, 609
BstV1I	GCAGC	2 cut(s)	423, 495
BsuRI	GGCC	7 cut(s)	90, 215, 336, 354, 473, 494, 710
BtgI	CCRYGG	1 cut(s)	175
BtrI	CACGTC	1 cut(s)	649
BtsCI	GGATG	3 cut(s)	525, 555, 672
Cac8I	GCNNGC	6 cut(s)	61, 175, 226, 352, 407, 695
CfoI	GCGC	6 cut(s)	21, 53, 396, 571, 581, 609
Cfr10I	RCCGGY	4 cut(s)	47, 59, 224, 350
Cfr13I	GGNCC	4 cut(s)	213, 214, 471, 493
Cfr42I	CCGCGG	1 cut(s)	178
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	6, 652, 676
CviAII	CATG	3 cut(s)	310, 388, 415
CviQI	GTAC	3 cut(s)	6, 652, 676
DdeI	CTNAG	1 cut(s)	512
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	4 cut(s)	78, 399, 479, 557
DpnII	GATC	4 cut(s)	76, 397, 477, 555
DriI	GACNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	334
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EciI	GGCGGA	3 cut(s)	106, 226, 629
Eco24I	GRGCYC	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	209, 429
EcoT38I	GRGCYC	1 cut(s)	217
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaeI	CATG	3 cut(s)	313, 391, 418
FaiI	YATR	3 cut(s)	311, 389, 416
FaqI	GGGAC	2 cut(s)	121, 515
FatI	CATG	3 cut(s)	309, 387, 414
FauI	CCCGC	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	426
FokI	GGATG	3 cut(s)	532, 562, 679
FriOI	GRGCYC	1 cut(s)	217
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	6 cut(s)	20, 52, 395, 570, 580, 608
GsaI	CCCAGC	2 cut(s)	626, 701
HaeII	RGCGCY	2 cut(s)	54, 582
HaeIII	GGCC	7 cut(s)	90, 215, 336, 354, 473, 494, 710
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	6 cut(s)	21, 53, 396, 571, 581, 609
Hin1I	GRCGYC	2 cut(s)	51, 129
Hin1II	CATG	3 cut(s)	313, 391, 418
Hin6I	GCGC	6 cut(s)	19, 51, 394, 569, 579, 607
HinP1I	GCGC	6 cut(s)	19, 51, 394, 569, 579, 607
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	1 cut(s)	563
HphI	GGTGA	5 cut(s)	71, 157, 376, 538, 656
Hpy166II	GTNNAC	4 cut(s)	6, 427, 562, 652
Hpy188I	TCNGA	2 cut(s)	729, 737
Hpy188III	TCNNGA	3 cut(s)	11, 446, 547
Hpy8I	GTNNAC	4 cut(s)	6, 427, 562, 652
Hpy99I	CGWCG	8 cut(s)	68, 71, 74, 77, 131, 272, 323, 722
HpyAV	CCTTC	3 cut(s)	283, 517, 634
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	2 cut(s)	381, 648
HpyF10VI	GCNNNNNNNGC	7 cut(s)	221, 347, 402, 470, 587, 596, 699
HpyF3I	CTNAG	1 cut(s)	512
HpySE526I	ACGT	2 cut(s)	381, 648
Hsp92I	GRCGYC	2 cut(s)	51, 129
Hsp92II	CATG	3 cut(s)	313, 391, 418
HspAI	GCGC	6 cut(s)	19, 51, 394, 569, 579, 607
KasI	GGCGCC	1 cut(s)	50
Kpn2I	TCCGGA	1 cut(s)	445
KroI	GCCGGC	3 cut(s)	59, 224, 350
KroNI	GCCGGC	3 cut(s)	61, 226, 352
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	76, 397, 477, 555
LmnI	GCTCC	4 cut(s)	56, 158, 233, 682
Lsp1109I	GCAGC	2 cut(s)	423, 495
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	381, 648
MaeIII	GTNAC	2 cut(s)	382, 644
MalI	GATC	4 cut(s)	78, 399, 479, 557
MboI	GATC	4 cut(s)	76, 397, 477, 555
MboII	GAAGA	3 cut(s)	22, 25, 178
MhlI	GDGCHC	2 cut(s)	217, 411
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	1 cut(s)	216
MroI	TCCGGA	1 cut(s)	445
MroNI	GCCGGC	3 cut(s)	59, 224, 350
MspA1I	CMGCKG	1 cut(s)	177
MspR9I	CCNGG	7 cut(s)	150, 211, 333, 431, 470, 496, 680
MvaI	CCWGG	2 cut(s)	211, 431
MvnI	CGCG	5 cut(s)	21, 177, 396, 402, 609
MwoI	GCNNNNNNNGC	7 cut(s)	221, 347, 402, 470, 587, 596, 699
NaeI	GCCGGC	3 cut(s)	61, 226, 352
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	5 cut(s)	150, 333, 470, 496, 680
NdeII	GATC	4 cut(s)	76, 397, 477, 555
NgoMIV	GCCGGC	3 cut(s)	59, 224, 350
NlaIII	CATG	3 cut(s)	313, 391, 418
NlaIV	GGNNCC	5 cut(s)	52, 58, 154, 215, 229
NmeAIII	GCCGAG	5 cut(s)	66, 470, 545, 607, 682
NmuCI	GTSAC	2 cut(s)	382, 644
PcsI	WCGNNNNNNNCGW	4 cut(s)	72, 93, 579, 654
PdiI	GCCGGC	3 cut(s)	61, 226, 352
PflFI	GACNNNGTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	262
Ple19I	CGATCG	1 cut(s)	400
PleI	GAGTC	1 cut(s)	557
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	209, 429
PspFI	CCCAGC	2 cut(s)	622, 697
PspGI	CCWGG	2 cut(s)	209, 429
PspN4I	GGNNCC	5 cut(s)	52, 58, 154, 215, 229
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	4 cut(s)	213, 214, 471, 493
PsyI	GACNNNGTC	1 cut(s)	380
PvuI	CGATCG	1 cut(s)	400
RgaI	GCGATCGC	1 cut(s)	400
RsaI	GTAC	3 cut(s)	7, 653, 677
RsaNI	GTAC	3 cut(s)	6, 652, 676
SacII	CCGCGG	1 cut(s)	178
SalI	GTCGAC	1 cut(s)	425
Sau3AI	GATC	4 cut(s)	76, 397, 477, 555
Sau96I	GGNCC	4 cut(s)	213, 214, 471, 493
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	7 cut(s)	150, 211, 333, 431, 470, 496, 680
SduI	GDGCHC	2 cut(s)	217, 411
SfaAI	GCGATCGC	1 cut(s)	400
SfoI	GGCGCC	1 cut(s)	52
Sfr303I	CCGCGG	1 cut(s)	178
SgfI	GCGATCGC	1 cut(s)	400
SgrBI	CCGCGG	1 cut(s)	178
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	7 cut(s)	148, 209, 331, 429, 468, 494, 678
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	2 cut(s)	384, 651
TaqI	TCGA	2 cut(s)	201, 426
TaqII	GACCGA	1 cut(s)	475
TatI	WGTACW	1 cut(s)	5
TseFI	GTSAC	2 cut(s)	382, 644
TseI	GCWGC	2 cut(s)	436, 508
Tsp45I	GTSAC	2 cut(s)	382, 644
TspDTI	ATGAA	1 cut(s)	536
TspGWI	ACGGA	1 cut(s)	145
Tth111I	GACNNNGTC	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	262
XbaI	TCTAGA	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.