Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014058

Physical Location & Seq

Genomic Coordinates Forward (+)

6000262 .. 6002270

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG036400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTGTACTCTAGAGAAGCGCGGCGACATCTTCTTCCTAACCCTAACCGGCGCCGGAGCCGGCGACGACGACAACGACGAGCACCGCCTCGGCCTCCCCGTCATCTCCTCCCTCCTCTCCGCCCTCGCCGACGCCAAGTCCCAATCCTCCCCCGGCTCCGTCCTCATCACCACCGCCCGCGGCAAGTTCTTCTCCAACGGCTTCGACCTCGCCTGGGCCCAAACCGCCGGCTCCTCCTCCGCCGCCCGCCACCGCCTCCACCAGATGGTCGTCGCCTTCAAGCCCGTCGTCGCCGCCCTCCTCTCCCTCCCCATGCCCACCGTCGCCGCCCTCCCCGGCCACGCCGCCGCCGCCGGCCTCCTCCTCGCCCTCAGCCACGACTACGTCACCATGCGGCGAGATCGCGGCGTGCTCTACATGAGCGAGGTCGACCTGGGGCTGCCGCTGCCGGACTACTTCGCGGCGGCGTTCCGGGCCAAGATCGGGTCGGTCTCGGCCCGGAGGGACGTCCTGCTGAGGGGGATGAAGGTGAGGGGAGAGGAGGCGGTCAGGATGGGGATCGTGGACTCGGCGCACGATAGCGCCGAGGCGGCGGTTGAGGCGGCGGTGCGCGTGGCGGAGAAGCTCGGGGAGAGGAAGTGGAAGGGTGACGTGTACGCCGAGATTAGGATGAGCTTGTACCCGGAGCTATGTGGCGTGCTGGGATTGGACGCCAAAGTCGTCGCCACTCCGAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004165 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010243 GO:0010817 GO:0014070 GO:0016042 GO:0016049 GO:0016054 GO:0016853 GO:0016860 GO:0016863 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0072329 GO:0080024 GO:0080026 GO:0080147 GO:0080167 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901564 GO:1901575 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 ko04626 map00062 map01110 map04626

Pfam Domains

Protein Families

ECH_1

Protein Analysis

246

Amino Acids

26.13

Weight (kDa)

7.81

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	30 - 199	1.1e-06	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	35 - 211	2.1e-19	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14430 AT4G14440
fragaria_vesca	FvH4_4g03200
malus_domestica	MD13G1210400.v1.1
prunus_persica	Prupe.1G034900_v2.0.a1
pyrus_communis	pycom13g18290
rosa_chinensis	RchiOBHm_Chr4g0391851
rosa_laevigata	RLG00000009854
rosa_multiflora	Rmu_sc0000383.1_g000017 Rmu_sc0007693.1_g000007
rosa_roxburghii	Rroxscaffold_5G00337180
rosa_rugosa	Rorug03G0336500
rosa_samantha	Rh4AG038900 Rh4BG033500 Rh4CG041500 Rh4DG036400
rosa_wichuraiana	Rw4G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	716
AatII	GACGTC	1 cut(s)	510
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	5 cut(s)	21, 180, 405, 461, 612
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	337
AcyI	GRCGYC	4 cut(s)	51, 132, 507, 711
AfaI	GTAC	3 cut(s)	7, 656, 680
AfiI	CCNNNNNNNGG	5 cut(s)	214, 265, 483, 517, 666
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	1 cut(s)	280
AhdI	GACNNNNNGTC	1 cut(s)	136
AjiI	CACGTC	1 cut(s)	652
AjnI	CCWGG	2 cut(s)	212, 432
AluBI	AGCT	4 cut(s)	625, 675, 688, 736
AluI	AGCT	4 cut(s)	625, 675, 688, 736
Alw21I	GWGCWC	2 cut(s)	84, 414
Alw26I	GTCTC	1 cut(s)	496
AlwI	GGATC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	6 cut(s)	91, 216, 337, 355, 474, 495
ApaI	GGGCCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	439, 445
AspLEI	GCGC	5 cut(s)	21, 53, 574, 584, 612
AspS9I	GGNCC	4 cut(s)	216, 217, 474, 496
AsuC2I	CCSGG	5 cut(s)	153, 336, 473, 499, 683
AsuHPI	GGTGA	4 cut(s)	160, 379, 541, 659
AvaI	CYCGRG	1 cut(s)	626
BaeGI	GKGCMC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	220
Bbv12I	GWGCWC	2 cut(s)	84, 414
BbvCI	CCTCAGC	2 cut(s)	371, 515
BbvI	GCAGC	2 cut(s)	426, 432
BccI	CCATC	2 cut(s)	259, 547
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	2 cut(s)	214, 434
BcnI	CCSGG	5 cut(s)	153, 336, 473, 499, 683
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	2 cut(s)	54, 585
BglI	GCCNNNNNGGC	1 cut(s)	590
Bme1390I	CCNGG	7 cut(s)	153, 214, 336, 434, 473, 499, 683
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	626
BmgBI	CACGTC	1 cut(s)	652
BmgT120I	GGNCC	4 cut(s)	216, 217, 474, 496
BmiI	GGNNCC	5 cut(s)	52, 58, 157, 218, 232
BmrFI	CCNGG	7 cut(s)	153, 214, 336, 434, 473, 499, 683
Bpu10I	CCTNAGC	2 cut(s)	371, 515
BpuMI	CCSGG	5 cut(s)	153, 336, 473, 499, 683
BsaBI	GATNNNNATC	1 cut(s)	557
BsaHI	GRCGYC	4 cut(s)	51, 132, 507, 711
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	7 cut(s)	88, 151, 178, 213, 334, 433, 585
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 265, 483, 517, 666
Bse118I	RCCGGY	4 cut(s)	47, 59, 227, 353
Bse8I	GATNNNNATC	1 cut(s)	557
BseBI	CCWGG	2 cut(s)	214, 434
BseDI	CCNNGG	7 cut(s)	88, 151, 178, 213, 334, 433, 585
BseGI	GGATG	3 cut(s)	528, 558, 675
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	5 cut(s)	214, 265, 483, 517, 666
BseMII	CTCAG	2 cut(s)	385, 506
BseRI	GAGGAG	8 cut(s)	97, 104, 223, 226, 290, 350, 353, 554
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	426, 432
BseYI	CCCAGC	1 cut(s)	700
Bsh1236I	CGCG	5 cut(s)	21, 180, 405, 461, 612
BshFI	GGCC	6 cut(s)	93, 218, 339, 357, 476, 497
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	2 cut(s)	84, 414
BsiHKCI	CYCGRG	1 cut(s)	626
BslFI	GGGAC	2 cut(s)	124, 518
BslI	CCNNNNNNNGG	5 cut(s)	214, 265, 483, 517, 666
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	2 cut(s)	124, 518
BsnI	GGCC	6 cut(s)	93, 218, 339, 357, 476, 497
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	1 cut(s)	626
Bsp120I	GGGCCC	1 cut(s)	216
Bsp1286I	GDGCHC	3 cut(s)	84, 220, 414
Bsp143I	GATC	3 cut(s)	400, 480, 558
BspANI	GGCC	6 cut(s)	93, 218, 339, 357, 476, 497
BspCNI	CTCAG	2 cut(s)	384, 507
BspFNI	CGCG	5 cut(s)	21, 180, 405, 461, 612
BspLI	GGNNCC	5 cut(s)	52, 58, 157, 218, 232
BspPI	GGATC	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	496
BsrFI	RCCGGY	4 cut(s)	47, 59, 227, 353
BssAI	RCCGGY	4 cut(s)	47, 59, 227, 353
BssECI	CCNNGG	7 cut(s)	88, 151, 178, 213, 334, 433, 585
BssMI	GATC	3 cut(s)	400, 480, 558
BssNI	GRCGYC	4 cut(s)	51, 132, 507, 711
Bst2UI	CCWGG	2 cut(s)	214, 434
Bst4CI	ACNGT	1 cut(s)	322
BstACI	GRCGYC	4 cut(s)	51, 132, 507, 711
BstC8I	GCNNGC	7 cut(s)	61, 178, 229, 247, 355, 410, 698
BstDEI	CTNAG	2 cut(s)	371, 515
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	3 cut(s)	528, 558, 675
BstFNI	CGCG	5 cut(s)	21, 180, 405, 461, 612
BstH2I	RGCGCY	2 cut(s)	54, 585
BstHHI	GCGC	5 cut(s)	21, 53, 574, 584, 612
BstKTI	GATC	3 cut(s)	403, 483, 561
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	3 cut(s)	400, 480, 558
BstMWI	GCNNNNNNNGC	6 cut(s)	224, 350, 445, 473, 590, 599
BstNI	CCWGG	2 cut(s)	214, 434
BstSCI	CCNGG	7 cut(s)	151, 212, 334, 432, 471, 497, 681
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	5 cut(s)	21, 180, 405, 461, 612
BstV1I	GCAGC	2 cut(s)	426, 432
BsuRI	GGCC	6 cut(s)	93, 218, 339, 357, 476, 497
BtgI	CCRYGG	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	652
BtsCI	GGATG	3 cut(s)	528, 558, 675
Cac8I	GCNNGC	7 cut(s)	61, 178, 229, 247, 355, 410, 698
CfoI	GCGC	5 cut(s)	21, 53, 574, 584, 612
Cfr10I	RCCGGY	4 cut(s)	47, 59, 227, 353
Cfr13I	GGNCC	4 cut(s)	216, 217, 474, 496
Cfr42I	CCGCGG	1 cut(s)	181
CseI	GACGC	2 cut(s)	140, 719
Csp6I	GTAC	3 cut(s)	6, 655, 679
CviAII	CATG	3 cut(s)	313, 391, 418
CviQI	GTAC	3 cut(s)	6, 655, 679
DdeI	CTNAG	2 cut(s)	371, 515
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	3 cut(s)	402, 482, 560
DpnII	GATC	3 cut(s)	400, 480, 558
DrdI	GACNNNNNNGTC	1 cut(s)	716
DriI	GACNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	716
EaeI	YGGCCR	1 cut(s)	337
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EciI	GGCGGA	3 cut(s)	109, 229, 632
Eco24I	GRGCYC	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	496
Eco88I	CYCGRG	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	212, 432
EcoT38I	GRGCYC	1 cut(s)	220
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaeI	CATG	3 cut(s)	316, 394, 421
FaiI	YATR	4 cut(s)	314, 392, 419, 691
FaqI	GGGAC	2 cut(s)	124, 518
FatI	CATG	3 cut(s)	312, 390, 417
FauI	CCCGC	2 cut(s)	185, 254
FblI	GTMKAC	1 cut(s)	429
FokI	GGATG	3 cut(s)	535, 565, 682
FriOI	GRGCYC	1 cut(s)	220
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	5 cut(s)	20, 52, 573, 583, 611
GsaI	CCCAGC	1 cut(s)	704
HaeII	RGCGCY	2 cut(s)	54, 585
HaeIII	GGCC	6 cut(s)	93, 218, 339, 357, 476, 497
HgaI	GACGC	2 cut(s)	140, 719
HhaI	GCGC	5 cut(s)	21, 53, 574, 584, 612
Hin1I	GRCGYC	4 cut(s)	51, 132, 507, 711
Hin1II	CATG	3 cut(s)	316, 394, 421
Hin6I	GCGC	5 cut(s)	19, 51, 572, 582, 610
HinP1I	GCGC	5 cut(s)	19, 51, 572, 582, 610
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	566
HphI	GGTGA	4 cut(s)	160, 379, 541, 659
Hpy166II	GTNNAC	4 cut(s)	6, 430, 565, 655
Hpy188I	TCNGA	2 cut(s)	732, 740
Hpy188III	TCNNGA	2 cut(s)	11, 550
Hpy8I	GTNNAC	4 cut(s)	6, 430, 565, 655
Hpy99I	CGWCG	9 cut(s)	68, 71, 80, 134, 275, 290, 293, 326, 725
HpyAV	CCTTC	3 cut(s)	286, 520, 637
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	3 cut(s)	384, 507, 651
HpyF10VI	GCNNNNNNNGC	6 cut(s)	224, 350, 445, 473, 590, 599
HpyF3I	CTNAG	2 cut(s)	371, 515
HpySE526I	ACGT	3 cut(s)	384, 507, 651
Hsp92I	GRCGYC	4 cut(s)	51, 132, 507, 711
Hsp92II	CATG	3 cut(s)	316, 394, 421
HspAI	GCGC	5 cut(s)	19, 51, 572, 582, 610
KasI	GGCGCC	1 cut(s)	50
KroI	GCCGGC	3 cut(s)	59, 227, 353
KroNI	GCCGGC	3 cut(s)	61, 229, 355
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	400, 480, 558
LmnI	GCTCC	4 cut(s)	56, 161, 236, 685
Lsp1109I	GCAGC	2 cut(s)	426, 432
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	3 cut(s)	384, 507, 651
MaeIII	GTNAC	2 cut(s)	385, 647
MalI	GATC	3 cut(s)	402, 482, 560
MboI	GATC	3 cut(s)	400, 480, 558
MboII	GAAGA	3 cut(s)	22, 25, 181
MhlI	GDGCHC	3 cut(s)	84, 220, 414
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	219
MroNI	GCCGGC	3 cut(s)	59, 227, 353
MspA1I	CMGCKG	2 cut(s)	180, 445
MspR9I	CCNGG	7 cut(s)	153, 214, 336, 434, 473, 499, 683
MvaI	CCWGG	2 cut(s)	214, 434
MvnI	CGCG	5 cut(s)	21, 180, 405, 461, 612
MwoI	GCNNNNNNNGC	6 cut(s)	224, 350, 445, 473, 590, 599
NaeI	GCCGGC	3 cut(s)	61, 229, 355
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	5 cut(s)	153, 336, 473, 499, 683
NdeII	GATC	3 cut(s)	400, 480, 558
NgoMIV	GCCGGC	3 cut(s)	59, 227, 353
NlaIII	CATG	3 cut(s)	316, 394, 421
NlaIV	GGNNCC	5 cut(s)	52, 58, 157, 218, 232
NmeAIII	GCCGAG	5 cut(s)	69, 473, 548, 610, 685
NmuCI	GTSAC	2 cut(s)	385, 647
PcsI	WCGNNNNNNNCGW	6 cut(s)	72, 75, 96, 582, 657, 717
PdiI	GCCGGC	3 cut(s)	61, 229, 355
PflFI	GACNNNGTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	265
PleI	GAGTC	1 cut(s)	560
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	212, 432
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	2 cut(s)	212, 432
PspN4I	GGNNCC	5 cut(s)	52, 58, 157, 218, 232
PspOMI	GGGCCC	1 cut(s)	216
PspPI	GGNCC	4 cut(s)	216, 217, 474, 496
PsyI	GACNNNGTC	1 cut(s)	383
RsaI	GTAC	3 cut(s)	7, 656, 680
RsaNI	GTAC	3 cut(s)	6, 655, 679
SacII	CCGCGG	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	428
Sau3AI	GATC	3 cut(s)	400, 480, 558
Sau96I	GGNCC	4 cut(s)	216, 217, 474, 496
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	7 cut(s)	153, 214, 336, 434, 473, 499, 683
SduI	GDGCHC	3 cut(s)	84, 220, 414
SfoI	GGCGCC	1 cut(s)	52
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	7 cut(s)	151, 212, 334, 432, 471, 497, 681
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	3 cut(s)	387, 510, 654
TaqI	TCGA	2 cut(s)	204, 429
TaqII	GACCGA	1 cut(s)	478
TatI	WGTACW	1 cut(s)	5
TseFI	GTSAC	2 cut(s)	385, 647
TseI	GCWGC	2 cut(s)	439, 445
Tsp45I	GTSAC	2 cut(s)	385, 647
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	383
Van91I	CCANNNNNTGG	1 cut(s)	265
XbaI	TCTAGA	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	1 cut(s)	11
ZraI	GACGTC	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.