Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014058

Physical Location & Seq

Genomic Coordinates Forward (+)

5218659 .. 5219399

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTGTACTCTAGAGAAGCGCGGCAACATCTTCTTCCTAACCCTGACCGGAGCCGGAGCCCGCGACGACGACAACGACGAGCACCGCCTCGGCCTCCCCGTCATCTCCTCCCTCCTCTCCGCCCTCGCCGACGCCAAGTCCCAATCCTCCCCCGGCTCCGTCCTCATCACCACCGCCCGCGGCAAATTCTTCTCCAACGGCTTCGACCTCGCCTGGGCCCAAACCGCCGGCTCTGCCTCCGCCGCGCGCCACCGCCTCCACCAGATGGTCGTCGCCTTCAAGCCCGTCGTCGCCGCCCTCCTCTCCCTCCCCATGCCCACAGTCGCCGCCCTCCCCGGCCACGCCGCCGCCGCCGGCCTCCTCCTCGCCGTCAGCCACGACTACGTCACCATGCGGCGCGATCGCGGCGTGCTCTACATGAGCGAGGTCGACCTGGGGCTGCCGTTTCCGGACTACTTCACGGCGGCGTTCCGGGCCAAGATCGGGTCGGTCTCGGCCCGCAGGGACGTGCTGCTGAGGGGGATGAAGGTGAGGGGAGAGGAGGCGGTCAGGATGGGGATCGTGGACTCGGCGCACGATAGCGCCGAGGCGGCGGTGGAGGCGGCGGTGCGCGTGGCGGAGAAGCTGGGGGAGAGGAAGTGGAAGGGTGACGTGTACGCGGAGATTAGGATGAGCTTGTATCCGGAGCTATGTGGCGTGCTGGGATTGGAGGCCAAAGTCGTCGCCACTCCGAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004165 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010243 GO:0010817 GO:0014070 GO:0016042 GO:0016049 GO:0016054 GO:0016853 GO:0016860 GO:0016863 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0072329 GO:0080024 GO:0080026 GO:0080147 GO:0080167 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901564 GO:1901575 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 ko04626 map00062 map01110 map04626

Pfam Domains

Protein Families

ECH_1

Protein Analysis

246

Amino Acids

26.28

Weight (kDa)

8.88

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	30 - 199	1.5e-07	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	35 - 211	1.4e-19	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14430 AT4G14440
fragaria_vesca	FvH4_4g03200
malus_domestica	MD13G1210400.v1.1
prunus_persica	Prupe.1G034900_v2.0.a1
pyrus_communis	pycom13g18290
rosa_chinensis	RchiOBHm_Chr4g0391851
rosa_laevigata	RLG00000009854
rosa_multiflora	Rmu_sc0000383.1_g000017 Rmu_sc0007693.1_g000007
rosa_roxburghii	Rroxscaffold_5G00337180
rosa_rugosa	Rorug03G0336500
rosa_samantha	Rh4AG038900 Rh4BG033500 Rh4CG041500 Rh4DG036400
rosa_wichuraiana	Rw4G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	9 cut(s)	21, 63, 180, 245, 247, 399, 405, 612, 659
AccIII	TCCGGA	2 cut(s)	448, 682
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	7, 656
AfiI	CCNNNNNNNGG	3 cut(s)	214, 265, 483
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	1 cut(s)	280
AhdI	GACNNNNNGTC	1 cut(s)	136
AjiI	CACGTC	2 cut(s)	508, 652
AjnI	CCWGG	2 cut(s)	212, 432
AluBI	AGCT	4 cut(s)	625, 675, 688, 736
AluI	AGCT	4 cut(s)	625, 675, 688, 736
Alw21I	GWGCWC	2 cut(s)	84, 414
Alw26I	GTCTC	1 cut(s)	496
AlwI	GGATC	1 cut(s)	566
Aor13HI	TCCGGA	2 cut(s)	448, 682
AoxI	GGCC	7 cut(s)	91, 216, 337, 355, 474, 495, 711
ApaI	GGGCCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	439, 511
ApoI	RAATTY	1 cut(s)	185
AsiSI	GCGATCGC	1 cut(s)	403
AspLEI	GCGC	7 cut(s)	21, 247, 249, 399, 574, 584, 612
AspS9I	GGNCC	4 cut(s)	216, 217, 474, 496
AsuC2I	CCSGG	3 cut(s)	153, 336, 473
AsuHPI	GGTGA	4 cut(s)	160, 379, 541, 659
BaeGI	GKGCMC	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	61, 220
Bbv12I	GWGCWC	2 cut(s)	84, 414
BbvCI	CCTCAGC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	426, 498
BccI	CCATC	2 cut(s)	259, 547
BceAI	ACGGC	4 cut(s)	214, 353, 427, 477
BciT130I	CCWGG	2 cut(s)	214, 434
BciVI	GTATCC	1 cut(s)	690
BcnI	CCSGG	3 cut(s)	153, 336, 473
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	585
BfuI	GTATCC	1 cut(s)	690
BglI	GCCNNNNNGGC	1 cut(s)	590
Bme1390I	CCNGG	5 cut(s)	153, 214, 336, 434, 473
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmgBI	CACGTC	2 cut(s)	508, 652
BmgT120I	GGNCC	4 cut(s)	216, 217, 474, 496
BmiI	GGNNCC	4 cut(s)	52, 58, 157, 218
BmrFI	CCNGG	5 cut(s)	153, 214, 336, 434, 473
Bpu10I	CCTNAGC	1 cut(s)	515
BpuMI	CCSGG	3 cut(s)	153, 336, 473
BsaBI	GATNNNNATC	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	7 cut(s)	88, 151, 178, 213, 334, 433, 585
BsaWI	WCCGGW	3 cut(s)	47, 448, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 265, 483
Bse118I	RCCGGY	2 cut(s)	227, 353
Bse8I	GATNNNNATC	1 cut(s)	557
BseAI	TCCGGA	2 cut(s)	448, 682
BseBI	CCWGG	2 cut(s)	214, 434
BseDI	CCNNGG	7 cut(s)	88, 151, 178, 213, 334, 433, 585
BseGI	GGATG	3 cut(s)	528, 558, 675
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	3 cut(s)	214, 265, 483
BseMII	CTCAG	1 cut(s)	506
BsePI	GCGCGC	1 cut(s)	245
BseRI	GAGGAG	6 cut(s)	97, 104, 290, 350, 353, 554
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	426, 498
BseYI	CCCAGC	2 cut(s)	625, 700
Bsh1236I	CGCG	9 cut(s)	21, 63, 180, 245, 247, 399, 405, 612, 659
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	7 cut(s)	93, 218, 339, 357, 476, 497, 713
BsiEI	CGRYCG	1 cut(s)	403
BsiHKAI	GWGCWC	2 cut(s)	84, 414
BsiSI	CCGG	9 cut(s)	48, 54, 153, 228, 336, 354, 449, 472, 683
BslFI	GGGAC	2 cut(s)	124, 518
BslI	CCNNNNNNNGG	3 cut(s)	214, 265, 483
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	2 cut(s)	124, 518
BsnI	GGCC	7 cut(s)	93, 218, 339, 357, 476, 497, 713
Bso31I	GGTCTC	1 cut(s)	496
Bsp120I	GGGCCC	1 cut(s)	216
Bsp1286I	GDGCHC	4 cut(s)	61, 84, 220, 414
Bsp13I	TCCGGA	2 cut(s)	448, 682
Bsp143I	GATC	3 cut(s)	400, 480, 558
BspANI	GGCC	7 cut(s)	93, 218, 339, 357, 476, 497, 713
BspCNI	CTCAG	1 cut(s)	507
BspEI	TCCGGA	2 cut(s)	448, 682
BspFNI	CGCG	9 cut(s)	21, 63, 180, 245, 247, 399, 405, 612, 659
BspLI	GGNNCC	4 cut(s)	52, 58, 157, 218
BspPI	GGATC	1 cut(s)	566
BspTNI	GGTCTC	1 cut(s)	496
BsrFI	RCCGGY	2 cut(s)	227, 353
BssAI	RCCGGY	2 cut(s)	227, 353
BssECI	CCNNGG	7 cut(s)	88, 151, 178, 213, 334, 433, 585
BssHII	GCGCGC	1 cut(s)	245
BssMI	GATC	3 cut(s)	400, 480, 558
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	214, 434
Bst4CI	ACNGT	1 cut(s)	322
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	8 cut(s)	61, 178, 229, 247, 355, 410, 499, 698
BstDEI	CTNAG	1 cut(s)	515
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	3 cut(s)	528, 558, 675
BstFNI	CGCG	9 cut(s)	21, 63, 180, 245, 247, 399, 405, 612, 659
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	7 cut(s)	21, 247, 249, 399, 574, 584, 612
BstKTI	GATC	3 cut(s)	403, 483, 561
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	3 cut(s)	400, 480, 558
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	8 cut(s)	224, 233, 242, 350, 405, 473, 590, 599
BstNI	CCWGG	2 cut(s)	214, 434
BstSCI	CCNGG	5 cut(s)	151, 212, 334, 432, 471
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	9 cut(s)	21, 63, 180, 245, 247, 399, 405, 612, 659
BstV1I	GCAGC	2 cut(s)	426, 498
BsuI	GTATCC	1 cut(s)	690
BsuRI	GGCC	7 cut(s)	93, 218, 339, 357, 476, 497, 713
BtgI	CCRYGG	1 cut(s)	178
BtrI	CACGTC	2 cut(s)	508, 652
BtsCI	GGATG	3 cut(s)	528, 558, 675
Cac8I	GCNNGC	8 cut(s)	61, 178, 229, 247, 355, 410, 499, 698
CfoI	GCGC	7 cut(s)	21, 247, 249, 399, 574, 584, 612
Cfr10I	RCCGGY	2 cut(s)	227, 353
Cfr13I	GGNCC	4 cut(s)	216, 217, 474, 496
Cfr42I	CCGCGG	1 cut(s)	181
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	6, 655
CviAII	CATG	3 cut(s)	313, 391, 418
CviQI	GTAC	2 cut(s)	6, 655
DdeI	CTNAG	1 cut(s)	515
DpnI	GATC	3 cut(s)	402, 482, 560
DpnII	GATC	3 cut(s)	400, 480, 558
DriI	GACNNNNNGTC	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	337
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EciI	GGCGGA	3 cut(s)	109, 229, 632
Eco24I	GRGCYC	2 cut(s)	61, 220
Eco31I	GGTCTC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	212, 432
EcoT38I	GRGCYC	2 cut(s)	61, 220
FaeI	CATG	3 cut(s)	316, 394, 421
FaiI	YATR	4 cut(s)	314, 392, 419, 691
FaqI	GGGAC	2 cut(s)	124, 518
FatI	CATG	3 cut(s)	312, 390, 417
FauI	CCCGC	3 cut(s)	68, 185, 506
FblI	GTMKAC	1 cut(s)	429
FokI	GGATG	3 cut(s)	535, 565, 682
FriOI	GRGCYC	2 cut(s)	61, 220
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	7 cut(s)	20, 246, 248, 398, 573, 583, 611
GsaI	CCCAGC	2 cut(s)	629, 704
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	7 cut(s)	93, 218, 339, 357, 476, 497, 713
HapII	CCGG	9 cut(s)	48, 54, 153, 228, 336, 354, 449, 472, 683
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	7 cut(s)	21, 247, 249, 399, 574, 584, 612
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	316, 394, 421
Hin6I	GCGC	7 cut(s)	19, 245, 247, 397, 572, 582, 610
HinP1I	GCGC	7 cut(s)	19, 245, 247, 397, 572, 582, 610
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	566
HpaII	CCGG	9 cut(s)	48, 54, 153, 228, 336, 354, 449, 472, 683
HphI	GGTGA	4 cut(s)	160, 379, 541, 659
Hpy166II	GTNNAC	4 cut(s)	6, 430, 565, 655
Hpy188I	TCNGA	2 cut(s)	732, 740
Hpy188III	TCNNGA	4 cut(s)	11, 449, 550, 683
Hpy8I	GTNNAC	4 cut(s)	6, 430, 565, 655
Hpy99I	CGWCG	8 cut(s)	68, 71, 80, 134, 275, 290, 293, 725
HpyAV	CCTTC	3 cut(s)	286, 520, 637
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	3 cut(s)	384, 507, 651
HpyF10VI	GCNNNNNNNGC	8 cut(s)	224, 233, 242, 350, 405, 473, 590, 599
HpyF3I	CTNAG	1 cut(s)	515
HpySE526I	ACGT	3 cut(s)	384, 507, 651
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	3 cut(s)	316, 394, 421
HspAI	GCGC	7 cut(s)	19, 245, 247, 397, 572, 582, 610
Kpn2I	TCCGGA	2 cut(s)	448, 682
KroI	GCCGGC	2 cut(s)	227, 353
KroNI	GCCGGC	2 cut(s)	229, 355
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	400, 480, 558
LmnI	GCTCC	4 cut(s)	50, 56, 161, 685
Lsp1109I	GCAGC	2 cut(s)	426, 498
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	3 cut(s)	384, 507, 651
MaeIII	GTNAC	2 cut(s)	385, 647
MalI	GATC	3 cut(s)	402, 482, 560
MboI	GATC	3 cut(s)	400, 480, 558
MboII	GAAGA	3 cut(s)	22, 25, 181
MhlI	GDGCHC	4 cut(s)	61, 84, 220, 414
MluCI	AATT	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	219
MroI	TCCGGA	2 cut(s)	448, 682
MroNI	GCCGGC	2 cut(s)	227, 353
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	9 cut(s)	48, 54, 153, 228, 336, 354, 449, 472, 683
MspR9I	CCNGG	5 cut(s)	153, 214, 336, 434, 473
MvaI	CCWGG	2 cut(s)	214, 434
MvnI	CGCG	9 cut(s)	21, 63, 180, 245, 247, 399, 405, 612, 659
MwoI	GCNNNNNNNGC	8 cut(s)	224, 233, 242, 350, 405, 473, 590, 599
NaeI	GCCGGC	2 cut(s)	229, 355
NciI	CCSGG	3 cut(s)	153, 336, 473
NdeII	GATC	3 cut(s)	400, 480, 558
NgoMIV	GCCGGC	2 cut(s)	227, 353
NlaIII	CATG	3 cut(s)	316, 394, 421
NlaIV	GGNNCC	4 cut(s)	52, 58, 157, 218
NmeAIII	GCCGAG	4 cut(s)	69, 473, 548, 610
NmuCI	GTSAC	2 cut(s)	385, 647
PauI	GCGCGC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	4 cut(s)	72, 75, 96, 582
PdiI	GCCGGC	2 cut(s)	229, 355
PflFI	GACNNNGTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	265
Ple19I	CGATCG	1 cut(s)	403
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	212, 432
PspFI	CCCAGC	2 cut(s)	625, 700
PspGI	CCWGG	2 cut(s)	212, 432
PspN4I	GGNNCC	4 cut(s)	52, 58, 157, 218
PspOMI	GGGCCC	1 cut(s)	216
PspPI	GGNCC	4 cut(s)	216, 217, 474, 496
PsyI	GACNNNGTC	1 cut(s)	383
PteI	GCGCGC	1 cut(s)	245
PvuI	CGATCG	1 cut(s)	403
RgaI	GCGATCGC	1 cut(s)	403
RsaI	GTAC	2 cut(s)	7, 656
RsaNI	GTAC	2 cut(s)	6, 655
SacII	CCGCGG	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	428
Sau3AI	GATC	3 cut(s)	400, 480, 558
Sau96I	GGNCC	4 cut(s)	216, 217, 474, 496
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	5 cut(s)	153, 214, 336, 434, 473
SduI	GDGCHC	4 cut(s)	61, 84, 220, 414
SfaAI	GCGATCGC	1 cut(s)	403
Sfr303I	CCGCGG	1 cut(s)	181
SgfI	GCGATCGC	1 cut(s)	403
SgrBI	CCGCGG	1 cut(s)	181
Sse9I	AATT	1 cut(s)	185
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	5 cut(s)	151, 212, 334, 432, 471
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	3 cut(s)	387, 510, 654
TaqI	TCGA	2 cut(s)	204, 429
TaqII	GACCGA	1 cut(s)	478
TasI	AATT	1 cut(s)	185
TatI	WGTACW	1 cut(s)	5
TseFI	GTSAC	2 cut(s)	385, 647
TseI	GCWGC	2 cut(s)	439, 511
Tsp45I	GTSAC	2 cut(s)	385, 647
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	383
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	185
XbaI	TCTAGA	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.