Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014058

Physical Location & Seq

Genomic Coordinates Forward (+)

2446418 .. 2447221

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G034900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTGCACTCTTGAGAAGCGCGGTGATCTCTTCTTCCTAACCCTAACCTGCGACGACGAGCACCGCCTCAGCCTAACCCTCATCGACTCGCTCCTCTCGGCTCTCTCCCAAGCCAAGTCCCAAGCCACTCGCGGCTCGGTCCTCGTCACCACCGCCCACGGCAAGTTCTTCTCCAACGGCTTCGACCTGGGCTGGGCCCAAGCCGCCGGCTCCGCCTCTGCCGCACGCGCTCGTCTCAGCCAAATGGTCGCCGCCTTCAAGCCAGTTGTCGCCGCGCTTCTCTCGCTCCCGATGCCGACGGTAGCCGCCGTCCAAGGCCACGCCGCTGCAGCCGGATTCTTATTGGCTCTGAGCCACGACTACTTCCTGATGAGGCGCGATAGAGGCGTGCTGTATATGAGCGAGGTCGATTTGGGGCTGCCATTCCCAGACTACTTCACGGCGGCGTTTCTGGCGAAGATCGGGTCGGTTTCGGGTAGGAGGGACGTGATGCTGAGGGGGATGAAGCTGAAGGGAGACGAGGCTGTCAAGCTTGGGATTGTGGAATCGGCGCACGATAGCGCGGAAAGCACGGTGGAGGCTGCGGTGCGCCTGGGGGAGCAGTTGGCGAAGAGGAAATGGAACGGCGACGTTTACGCGGAGATCAGGAAGAGTTTGTATCCGGAGTTGTGCGGCGTTGTTGGAGTGGGGGTTGCTAGTCCAAAGGCAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004165 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010243 GO:0010817 GO:0014070 GO:0016042 GO:0016049 GO:0016054 GO:0016853 GO:0016860 GO:0016863 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0072329 GO:0080024 GO:0080026 GO:0080147 GO:0080167 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901564 GO:1901575 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 ko04626 map00062 map01110 map04626

Pfam Domains

Protein Families

ECH_1

Protein Analysis

239

Amino Acids

25.42

Weight (kDa)

8.97

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14430 AT4G14440
fragaria_vesca	FvH4_4g03200
malus_domestica	MD13G1210400.v1.1
prunus_persica	Prupe.1G034900_v2.0.a1
pyrus_communis	pycom13g18290
rosa_chinensis	RchiOBHm_Chr4g0391851
rosa_laevigata	RLG00000009854
rosa_multiflora	Rmu_sc0000383.1_g000017 Rmu_sc0007693.1_g000007
rosa_roxburghii	Rroxscaffold_5G00337180
rosa_rugosa	Rorug03G0336500
rosa_samantha	Rh4AG038900 Rh4BG033500 Rh4CG041500 Rh4DG036400
rosa_wichuraiana	Rw4G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	56
AccII	CGCG	7 cut(s)	21, 132, 228, 275, 378, 563, 638
AccIII	TCCGGA	1 cut(s)	661
AcuI	CTGAAG	1 cut(s)	530
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	259
AjiI	CACGTC	1 cut(s)	487
AjnI	CCWGG	2 cut(s)	186, 591
AluBI	AGCT	3 cut(s)	508, 532, 712
AluI	AGCT	3 cut(s)	508, 532, 712
Alw21I	GWGCWC	2 cut(s)	8, 63
Alw26I	GTCTC	2 cut(s)	239, 510
Alw44I	GTGCAC	1 cut(s)	4
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	2 cut(s)	195, 316
ApaI	GGGCCC	1 cut(s)	199
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	4 cut(s)	326, 329, 418, 581
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AspLEI	GCGC	7 cut(s)	21, 230, 277, 378, 553, 563, 591
AspS9I	GGNCC	3 cut(s)	139, 195, 196
AsuHPI	GGTGA	2 cut(s)	35, 139
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	2 cut(s)	8, 199
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	2 cut(s)	8, 63
BbvCI	CCTCAGC	2 cut(s)	68, 494
BbvI	GCAGC	4 cut(s)	313, 341, 405, 568
BceAI	ACGGC	5 cut(s)	175, 193, 293, 456, 640
BciT130I	CCWGG	2 cut(s)	188, 593
BciVI	GTATCC	1 cut(s)	669
BcoDI	GTCTC	2 cut(s)	239, 510
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	669
Bme1390I	CCNGG	2 cut(s)	188, 593
Bme18I	GGWCC	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	487
BmgT120I	GGNCC	3 cut(s)	139, 195, 196
BmiI	GGNNCC	2 cut(s)	197, 211
BmrFI	CCNGG	2 cut(s)	188, 593
BmsI	GCATC	2 cut(s)	282, 480
Bpu10I	CCTNAGC	2 cut(s)	68, 494
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	4 cut(s)	157, 187, 313, 592
BsaWI	WCCGGW	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	263
BseAI	TCCGGA	1 cut(s)	661
BseBI	CCWGG	2 cut(s)	188, 593
BseDI	CCNNGG	4 cut(s)	157, 187, 313, 592
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	4 cut(s)	82, 250, 341, 485
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	2 cut(s)	8, 199
BseXI	GCAGC	4 cut(s)	313, 341, 405, 568
BseYI	CCCAGC	1 cut(s)	192
Bsh1236I	CGCG	7 cut(s)	21, 132, 228, 275, 378, 563, 638
BshFI	GGCC	2 cut(s)	197, 318
BsiHKAI	GWGCWC	2 cut(s)	8, 63
BsiSI	CCGG	3 cut(s)	207, 333, 662
BslFI	GGGAC	2 cut(s)	103, 497
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	239, 510
BsmBI	CGTCTC	2 cut(s)	239, 510
BsmFI	GGGAC	2 cut(s)	103, 497
BsnI	GGCC	2 cut(s)	197, 318
Bsp120I	GGGCCC	1 cut(s)	195
Bsp1286I	GDGCHC	3 cut(s)	8, 63, 199
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	3 cut(s)	25, 459, 642
BspANI	GGCC	2 cut(s)	197, 318
BspCNI	CTCAG	4 cut(s)	81, 249, 342, 486
BspEI	TCCGGA	1 cut(s)	661
BspFNI	CGCG	7 cut(s)	21, 132, 228, 275, 378, 563, 638
BspLI	GGNNCC	2 cut(s)	197, 211
BspMAI	CTGCAG	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	4 cut(s)	157, 187, 313, 592
BssMI	GATC	3 cut(s)	25, 459, 642
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	2 cut(s)	188, 593
Bst4CI	ACNGT	2 cut(s)	301, 574
Bst6I	CTCTTC	3 cut(s)	35, 605, 644
BstC8I	GCNNGC	3 cut(s)	208, 226, 389
BstDEI	CTNAG	4 cut(s)	68, 236, 350, 494
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	7 cut(s)	21, 132, 228, 275, 378, 563, 638
BstHHI	GCGC	7 cut(s)	21, 230, 277, 378, 553, 563, 591
BstKTI	GATC	3 cut(s)	28, 462, 645
BstMAI	GTCTC	2 cut(s)	239, 510
BstMBI	GATC	3 cut(s)	25, 459, 642
BstNI	CCWGG	2 cut(s)	188, 593
BstSCI	CCNGG	2 cut(s)	186, 591
BstSFI	CTRYAG	1 cut(s)	327
BstSLI	GKGCMC	2 cut(s)	8, 199
BstUI	CGCG	7 cut(s)	21, 132, 228, 275, 378, 563, 638
BstV1I	GCAGC	4 cut(s)	313, 341, 405, 568
BsuI	GTATCC	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	197, 318
BtgI	CCRYGG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	507
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	3 cut(s)	208, 226, 389
CfoI	GCGC	7 cut(s)	21, 230, 277, 378, 553, 563, 591
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	3 cut(s)	139, 195, 196
DdeI	CTNAG	4 cut(s)	68, 236, 350, 494
DpnI	GATC	3 cut(s)	27, 461, 644
DpnII	GATC	3 cut(s)	25, 459, 642
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
Eam1104I	CTCTTC	3 cut(s)	35, 605, 644
EarI	CTCTTC	3 cut(s)	35, 605, 644
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	186, 591
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	313
Esp3I	CGTCTC	2 cut(s)	239, 510
FaiI	YATR	2 cut(s)	396, 398
FaqI	GGGAC	2 cut(s)	103, 497
FokI	GGATG	1 cut(s)	514
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	7 cut(s)	20, 229, 276, 377, 552, 562, 590
GsaI	CCCAGC	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	197, 318
HapII	CCGG	3 cut(s)	207, 333, 662
HhaI	GCGC	7 cut(s)	21, 230, 277, 378, 553, 563, 591
Hin6I	GCGC	7 cut(s)	19, 228, 275, 376, 551, 561, 589
HinP1I	GCGC	7 cut(s)	19, 228, 275, 376, 551, 561, 589
HindIII	AAGCTT	2 cut(s)	530, 710
HinfI	GANTC	3 cut(s)	86, 336, 545
HpaII	CCGG	3 cut(s)	207, 333, 662
HphI	GGTGA	2 cut(s)	35, 139
Hpy166II	GTNNAC	2 cut(s)	6, 634
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	5 cut(s)	11, 289, 367, 646, 662
Hpy8I	GTNNAC	2 cut(s)	6, 634
Hpy99I	CGWCG	4 cut(s)	56, 59, 301, 632
HpyAV	CCTTC	2 cut(s)	265, 505
HpyCH4III	ACNGT	2 cut(s)	301, 574
HpyCH4IV	ACGT	2 cut(s)	486, 630
HpyCH4V	TGCA	2 cut(s)	6, 329
HpyF3I	CTNAG	4 cut(s)	68, 236, 350, 494
HpySE526I	ACGT	2 cut(s)	486, 630
HspAI	GCGC	7 cut(s)	19, 228, 275, 376, 551, 561, 589
Kpn2I	TCCGGA	1 cut(s)	661
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	25, 459, 642
LmnI	GCTCC	4 cut(s)	96, 215, 291, 598
Lsp1109I	GCAGC	4 cut(s)	313, 341, 405, 568
LweI	GCATC	2 cut(s)	282, 480
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	2 cut(s)	486, 630
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	3 cut(s)	27, 461, 644
MboI	GATC	3 cut(s)	25, 459, 642
MboII	GAAGA	6 cut(s)	22, 25, 160, 469, 622, 661
MhlI	GDGCHC	3 cut(s)	8, 63, 199
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	198, 661
MroI	TCCGGA	1 cut(s)	661
MroNI	GCCGGC	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	3 cut(s)	207, 333, 662
MspR9I	CCNGG	2 cut(s)	188, 593
MvaI	CCWGG	2 cut(s)	188, 593
MvnI	CGCG	7 cut(s)	21, 132, 228, 275, 378, 563, 638
NaeI	GCCGGC	1 cut(s)	208
NdeII	GATC	3 cut(s)	25, 459, 642
NgoMIV	GCCGGC	1 cut(s)	206
NlaIV	GGNNCC	2 cut(s)	197, 211
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	145
PdiI	GCCGGC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	336, 545
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	186, 591
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	2 cut(s)	186, 591
PspN4I	GGNNCC	2 cut(s)	197, 211
PspOMI	GGGCCC	1 cut(s)	195
PspPI	GGNCC	3 cut(s)	139, 195, 196
PstI	CTGCAG	1 cut(s)	331
Sau3AI	GATC	3 cut(s)	25, 459, 642
Sau96I	GGNCC	3 cut(s)	139, 195, 196
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	2 cut(s)	188, 593
SduI	GDGCHC	3 cut(s)	8, 63, 199
SetI	ASST	8 cut(s)	50, 189, 408, 489, 510, 534, 633, 714
SfaNI	GCATC	2 cut(s)	282, 480
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SspMI	CTAG	1 cut(s)	696
StyD4I	CCNGG	2 cut(s)	186, 591
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	301, 574
TaiI	ACGT	2 cut(s)	489, 633
TaqI	TCGA	3 cut(s)	84, 183, 408
TaqII	GACCGA	1 cut(s)	127
TauI	GCSGC	9 cut(s)	135, 206, 224, 254, 275, 308, 326, 446, 675
TfiI	GAWTC	2 cut(s)	336, 545
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	4 cut(s)	326, 329, 418, 581
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	518
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	139
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.