Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006106

Physical Location & Seq

Genomic Coordinates Forward (+)

5464514 .. 5469777

Gene Structure 5264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06050.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAGAGCAAAGTGTTGGTCCAATACAACCACACTGATCCCTGCGCATTTGCTCGCTGGACTACCAAGGAAAGCTTCCAGTTCATGTCAGCCAGGCCGTGGCAACAAGTCATCGACTTCTACTCCGATGTGGTAAAAGGTCAGAAGCCCTTGTCTGCGTTGTTGGGTACTTCTAGTTTGAGCAAAAACAGAATTTGCAATAGTATAGAGAGTGTGAATTCTCAAAATAGAGGTGGGAGGTGGGCAAGATTGACTTTCAAGATTGTGGTGTCGTATCATGGTGGTTCTTTTGATGGGTGGCAAAAGCAGCCGGAGCTCTACACTGTCCAAAGTGTTGTTGAACAATGTCTTGGGAGATTTGTGGATGAGAAGAAAGCCCAGATGCTGAAGGAGAAAGGGTTGCCTTTGGAAGGGGCTGCAACTGTTGCTGGGCGGACCGATAAAGGAGTGACAGCCCTTAATCAAGTTTGTTCTTTCTATACTTGGAGCAAGGATGTTAGATGTCAAGATATTGCAGATGCTATAGATAATGCAGCACCAGGAAAACTCAGGACAGTATCAGTTACTGAGGTATCACGTGTGTTCCATCCAAATTTTTCTGCCAAATGGAGGCGGTATTTGTATATCTTTCCATTTAATGATGATGAGGAGGATCGGGAACAAAGTAATGATACTGGAGAGAATGCTCAAATATTGAAGATTAAAGAAAATCATCATGAGCATGAAGTTGTATCTGATAACTGCAGTGAGGCAAATGTTGGAAACACAAACATCACTGATGACGTAGGGCTTGAAGCTGAGAAGAAGCCACAGATGTTCAGTGTAAGCAGGGTGAACAAACTTTTGCAGAAACTAGAAGGAAAGTTATTGTCATATAAGATGTTTGCACGCGATACCAAAGCATCCAGAAACGAGGGTCCCCCAACAGAGTGTTTTGTCTTCCATGCTAGAGCAAGAGAGTACAGATTGCCATGTTCAGAGCATGAAAAAGGGAGACGGATTATGTGTATTGAACTGATTGCCAACAGATTCTTACGCAGGATGATTCGGGTTCTCGTGGCAACCTCAATAAGGGAAGCCGCTGCAGGTGCAGATGAGGACGCATTGATAAAACTGATGGATGCAACATGCAGACGTGCTACTGCTCCCCCGGCTCCACCTGATGGTCTATGCCTTGTTGATGTTGGTTATGAAGAATTTGATCCGCTAGATTGCCTCATCTCAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

411

Amino Acids

46.32

Weight (kDa)

7.06

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35400 AT5G35400
fragaria_vesca	FvH4_4g06050 FvH4_4g06050
malus_domestica	MD13G1232500.v1.1
prunus_persica	Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1
pyrus_communis	pycom13g20490
rosa_chinensis	RchiOBHm_Chr4g0397611
rosa_laevigata	RLG00000009424
rosa_multiflora	Rmu_sc0002729.1_g000001 Rmu_sc0005653.1_g000002
rosa_roxburghii	Rroxscaffold_5G00342420
rosa_rugosa	Rorug03G0342300 Rorug03G0342400
rosa_samantha	Rh4AG079300 Rh4BG077200 Rh4CG084900 Rh4DG072300
rosa_wichuraiana	Rw4G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1076
Acc16I	TGCGCA	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	1076
AccB7I	CCANNNNNTGG	2 cut(s)	99, 1163
AccII	CGCG	1 cut(s)	891
AciI	CCGC	4 cut(s)	433, 613, 1080, 1205
AclWI	GGATC	3 cut(s)	32, 660, 1196
AcsI	RAATTY	4 cut(s)	192, 217, 592, 1196
AcuI	CTGAAG	1 cut(s)	407
AcvI	CACGTG	1 cut(s)	578
AfaI	GTAC	2 cut(s)	169, 962
AfiI	CCNNNNNNNGG	5 cut(s)	99, 410, 609, 1071, 1163
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	5 cut(s)	259, 341, 697, 794, 1013
AjiI	CACGTC	1 cut(s)	1136
AjnI	CCWGG	2 cut(s)	92, 538
AjuI	GAANNNNNNNTTGG	4 cut(s)	59, 91, 333, 365
AluBI	AGCT	3 cut(s)	75, 316, 797
AluI	AGCT	3 cut(s)	75, 316, 797
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	988
AlwI	GGATC	3 cut(s)	32, 660, 1196
AlwNI	CAGNNNCTG	2 cut(s)	385, 566
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	4 cut(s)	307, 416, 533, 1082
ApoI	RAATTY	4 cut(s)	192, 217, 592, 1196
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	3 cut(s)	19, 435, 917
AsuC2I	CCSGG	1 cut(s)	1151
AsuHPI	GGTGA	1 cut(s)	844
AvaII	GGWCC	3 cut(s)	19, 435, 917
BaeI	ACNNNNGTAYC	2 cut(s)	555, 588
BanII	GRGCYC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	1055
BbrPI	CACGTG	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	931
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	319, 403, 545, 1069
BccI	CCATC	4 cut(s)	287, 594, 1111, 1157
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	94, 540
BcnI	CCSGG	1 cut(s)	1151
BcoDI	GTCTC	1 cut(s)	988
BfaI	CTAG	4 cut(s)	174, 854, 948, 1208
BfmI	CTRYAG	3 cut(s)	522, 742, 1083
BfuAI	ACCTGC	1 cut(s)	1076
BisI	GCNGC	5 cut(s)	308, 417, 534, 1080, 1083
BlsI	GCNGC	5 cut(s)	309, 418, 535, 1081, 1084
Bme1390I	CCNGG	3 cut(s)	94, 540, 1151
Bme18I	GGWCC	3 cut(s)	19, 435, 917
BmgBI	CACGTC	1 cut(s)	1136
BmgT120I	GGNCC	3 cut(s)	19, 435, 917
BmiI	GGNNCC	3 cut(s)	918, 919, 1155
BmrFI	CCNGG	3 cut(s)	94, 540, 1151
BmsI	GCATC	4 cut(s)	372, 508, 911, 1111
BpiI	GAAGAC	1 cut(s)	931
BpmI	CTGGAG	1 cut(s)	696
BpuMI	CCSGG	1 cut(s)	1151
BsaAI	YACGTR	1 cut(s)	578
BsaJI	CCNNGG	3 cut(s)	66, 98, 1149
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 383, 413
Bsc4I	CCNNNNNNNGG	5 cut(s)	99, 410, 609, 1071, 1163
Bse1I	ACTGG	2 cut(s)	79, 679
BseBI	CCWGG	2 cut(s)	94, 540
BseDI	CCNNGG	3 cut(s)	66, 98, 1149
BseGI	GGATG	6 cut(s)	370, 499, 586, 902, 1047, 1126
BseLI	CCNNNNNNNGG	5 cut(s)	99, 410, 609, 1071, 1163
BseMII	CTCAG	3 cut(s)	558, 562, 789
BseNI	ACTGG	2 cut(s)	79, 679
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	4 cut(s)	319, 403, 545, 1069
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	1110
Bsh1236I	CGCG	1 cut(s)	891
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	311, 1151
BslFI	GGGAC	1 cut(s)	903
BslI	CCNNNNNNNGG	5 cut(s)	99, 410, 609, 1071, 1163
BsmAI	GTCTC	1 cut(s)	988
BsmBI	CGTCTC	1 cut(s)	988
BsmFI	GGGAC	1 cut(s)	903
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	37, 652, 1201
BspACI	CCGC	4 cut(s)	433, 613, 1080, 1205
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	3 cut(s)	559, 561, 790
BspFNI	CGCG	1 cut(s)	891
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	3 cut(s)	918, 919, 1155
BspMAI	CTGCAG	2 cut(s)	746, 1087
BspMI	ACCTGC	1 cut(s)	1076
BspPI	GGATC	3 cut(s)	32, 660, 1196
BsrI	ACTGG	2 cut(s)	79, 679
BssECI	CCNNGG	3 cut(s)	66, 98, 1149
BssMI	GATC	3 cut(s)	37, 652, 1201
BssSI	CACGAG	1 cut(s)	1055
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	1055
Bst2UI	CCWGG	2 cut(s)	94, 540
Bst4CI	ACNGT	3 cut(s)	325, 424, 556
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	55, 889
BstDEI	CTNAG	3 cut(s)	548, 567, 798
BstDSI	CCRYGG	1 cut(s)	98
BstENI	CCTNNNNNAGG	2 cut(s)	408, 1069
BstF5I	GGATG	6 cut(s)	370, 499, 586, 902, 1047, 1126
BstFNI	CGCG	1 cut(s)	891
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	40, 655, 1204
BstMAI	GTCTC	1 cut(s)	988
BstMBI	GATC	3 cut(s)	37, 652, 1201
BstMWI	GCNNNNNNNGC	5 cut(s)	307, 313, 425, 1088, 1151
BstNI	CCWGG	2 cut(s)	94, 540
BstNSI	RCATGY	1 cut(s)	1131
BstSCI	CCNGG	3 cut(s)	92, 538, 1149
BstSFI	CTRYAG	3 cut(s)	522, 742, 1083
BstUI	CGCG	1 cut(s)	891
BstV1I	GCAGC	4 cut(s)	319, 403, 545, 1069
BstV2I	GAAGAC	1 cut(s)	931
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	1136
BtsCI	GGATG	6 cut(s)	370, 499, 586, 902, 1047, 1126
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	5 cut(s)	33, 321, 751, 774, 826
BveI	ACCTGC	1 cut(s)	1076
Cac8I	GCNNGC	2 cut(s)	55, 889
CaiI	CAGNNNCTG	2 cut(s)	385, 566
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	3 cut(s)	19, 435, 917
CpoI	CGGWCCG	1 cut(s)	435
CseI	GACGC	1 cut(s)	1109
Csp6I	GTAC	2 cut(s)	168, 961
CspI	CGGWCCG	1 cut(s)	435
CviAII	CATG	8 cut(s)	85, 278, 716, 722, 944, 972, 983, 1128
CviQI	GTAC	2 cut(s)	168, 961
DdeI	CTNAG	3 cut(s)	548, 567, 798
DpnI	GATC	3 cut(s)	39, 654, 1203
DpnII	GATC	3 cut(s)	37, 652, 1201
EciI	GGCGGA	1 cut(s)	448
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	3 cut(s)	19, 435, 917
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	407
Eco72I	CACGTG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	2 cut(s)	408, 1069
EcoO109I	RGGNCCY	1 cut(s)	917
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	92, 538
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	988
FaeI	CATG	8 cut(s)	88, 281, 719, 725, 947, 975, 986, 1131
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 238, 270
FaqI	GGGAC	1 cut(s)	903
FatI	CATG	8 cut(s)	84, 277, 715, 721, 943, 971, 982, 1127
Fnu4HI	GCNGC	5 cut(s)	308, 417, 534, 1080, 1083
FokI	GGATG	6 cut(s)	377, 506, 573, 889, 1054, 1133
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	5 cut(s)	308, 417, 534, 1080, 1083
FspBI	CTAG	4 cut(s)	174, 854, 948, 1208
FspI	TGCGCA	1 cut(s)	46
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	5 cut(s)	308, 417, 534, 1080, 1083
GsaI	CCCAGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	311, 1151
HgaI	GACGC	1 cut(s)	1109
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	8 cut(s)	88, 281, 719, 725, 947, 975, 986, 1131
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	2 cut(s)	1029, 1045
HpaII	CCGG	2 cut(s)	311, 1151
HphI	GGTGA	1 cut(s)	844
Hpy166II	GTNNAC	1 cut(s)	835
Hpy188I	TCNGA	4 cut(s)	127, 144, 736, 979
Hpy188III	TCNNGA	6 cut(s)	259, 506, 550, 656, 716, 906
Hpy8I	GTNNAC	1 cut(s)	835
HpyAV	CCTTC	3 cut(s)	382, 404, 851
HpyCH4III	ACNGT	3 cut(s)	325, 424, 556
HpyCH4IV	ACGT	3 cut(s)	577, 783, 1135
HpyF10VI	GCNNNNNNNGC	5 cut(s)	307, 313, 425, 1088, 1151
HpyF3I	CTNAG	3 cut(s)	548, 567, 798
HpySE526I	ACGT	3 cut(s)	577, 783, 1135
Hsp92II	CATG	8 cut(s)	88, 281, 719, 725, 947, 975, 986, 1131
HspAI	GCGC	1 cut(s)	45
KflI	GGGWCCC	1 cut(s)	917
Kzo9I	GATC	3 cut(s)	37, 652, 1201
LmnI	GCTCC	4 cut(s)	313, 486, 1150, 1159
Lsp1109I	GCAGC	4 cut(s)	319, 403, 545, 1069
LweI	GCATC	4 cut(s)	372, 508, 911, 1111
MaeI	CTAG	4 cut(s)	174, 854, 948, 1208
MaeII	ACGT	3 cut(s)	577, 783, 1135
MaeIII	GTNAC	2 cut(s)	448, 562
MalI	GATC	3 cut(s)	39, 654, 1203
MboI	GATC	3 cut(s)	37, 652, 1201
MboII	GAAGA	5 cut(s)	382, 709, 814, 931, 1205
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	4 cut(s)	192, 217, 592, 1196
MmeI	TCCRAC	1 cut(s)	739
MseI	TTAA	3 cut(s)	459, 636, 702
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	1082
MspI	CCGG	2 cut(s)	311, 1151
MspR9I	CCNGG	3 cut(s)	94, 540, 1151
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	2 cut(s)	94, 540
MvnI	CGCG	1 cut(s)	891
MwoI	GCNNNNNNNGC	5 cut(s)	307, 313, 425, 1088, 1151
NciI	CCSGG	1 cut(s)	1151
NdeII	GATC	3 cut(s)	37, 652, 1201
NlaIII	CATG	8 cut(s)	88, 281, 719, 725, 947, 975, 986, 1131
NlaIV	GGNNCC	3 cut(s)	918, 919, 1155
NmuCI	GTSAC	1 cut(s)	448
NsbI	TGCGCA	1 cut(s)	46
NspI	RCATGY	1 cut(s)	1131
PagI	TCATGA	1 cut(s)	715
PaqCI	CACCTGC	1 cut(s)	1076
PctI	GAATGC	1 cut(s)	688
PfeI	GAWTC	2 cut(s)	1029, 1045
PflMI	CCANNNNNTGG	2 cut(s)	99, 1163
PkrI	GCNGC	5 cut(s)	309, 418, 535, 1081, 1084
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
Ppu21I	YACGTR	1 cut(s)	578
PpuMI	RGGWCCY	1 cut(s)	917
Psp124BI	GAGCTC	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	917
Psp6I	CCWGG	2 cut(s)	92, 538
PspCI	CACGTG	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	2 cut(s)	92, 538
PspN4I	GGNNCC	3 cut(s)	918, 919, 1155
PspPI	GGNCC	3 cut(s)	19, 435, 917
PspPPI	RGGWCCY	1 cut(s)	917
PstI	CTGCAG	2 cut(s)	746, 1087
PstNI	CAGNNNCTG	2 cut(s)	385, 566
RsaI	GTAC	2 cut(s)	169, 962
RsaNI	GTAC	2 cut(s)	168, 961
RseI	CAYNNNNRTG	1 cut(s)	720
Rsr2I	CGGWCCG	1 cut(s)	435
RsrII	CGGWCCG	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	459, 636, 702
SatI	GCNGC	5 cut(s)	308, 417, 534, 1080, 1083
Sau3AI	GATC	3 cut(s)	37, 652, 1201
Sau96I	GGNCC	3 cut(s)	19, 435, 917
ScrFI	CCNGG	3 cut(s)	94, 540, 1151
SduI	GDGCHC	1 cut(s)	318
SfaNI	GCATC	4 cut(s)	372, 508, 911, 1111
SfcI	CTRYAG	3 cut(s)	522, 742, 1083
SinI	GGWCC	3 cut(s)	19, 435, 917
SmiMI	CAYNNNNRTG	1 cut(s)	720
Sse9I	AATT	4 cut(s)	192, 217, 592, 1196
SsiI	CCGC	4 cut(s)	433, 613, 1080, 1205
SspI	AATATT	1 cut(s)	693
SspMI	CTAG	4 cut(s)	174, 854, 948, 1208
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	3 cut(s)	92, 538, 1149
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	3 cut(s)	325, 424, 556
TaiI	ACGT	3 cut(s)	580, 786, 1138
TaqI	TCGA	1 cut(s)	114
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	4 cut(s)	192, 217, 592, 1196
TatI	WGTACW	1 cut(s)	960
TauI	GCSGC	1 cut(s)	1082
TfiI	GAWTC	2 cut(s)	1029, 1045
Tru1I	TTAA	3 cut(s)	459, 636, 702
Tru9I	TTAA	3 cut(s)	459, 636, 702
TscAI	CASTG	5 cut(s)	40, 328, 751, 781, 826
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	4 cut(s)	307, 416, 533, 1082
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	4 cut(s)	73, 738, 999, 1206
TspGWI	ACGGA	1 cut(s)	1012
TspRI	CASTG	5 cut(s)	40, 328, 751, 781, 826
Van91I	CCANNNNNTGG	2 cut(s)	99, 1163
VpaK11BI	GGWCC	3 cut(s)	19, 435, 917
XagI	CCTNNNNNAGG	2 cut(s)	408, 1069
XapI	RAATTY	4 cut(s)	192, 217, 592, 1196
XceI	RCATGY	1 cut(s)	1131
XspI	CTAG	4 cut(s)	174, 854, 948, 1208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.