Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005653.1

Orthogroup ID

OG0006106

Physical Location & Seq

Genomic Coordinates Reverse (-)

3284 .. 7739

Gene Structure 4456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005653.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggagagcaaggtctttgtccaatacaaccacaccgatccctgtgcatttgcgcgctggactaccaaggaaagcttccagttcatgtcagccaggccttggcaacaagtcatcgacttttattccgatgtggtaaagggtcagaagcccttgtctgcgttgttgggtacttcttgtttgagcaaaaacagaatttacaatagtgtagagtgcgtaaattctcaaaataggggtgggaggtgggcaagactgacgttcaagattgtggtttcgtatcatggggattcctttgatgggtggcaaaagcagccggacctctacactgtccaaagtgttgttgagcaatctcttgggaaatttgttgatgacaagaaagcccagatgctgaaagacaaagggttgccattggaaggggctgctactgtcgccggacggaccgataaaggagtcacagcccttaatcaagtttgttctttctatacttggagaaaggatgtgcaatctcaagatattgcagaagctataagtagtgcagcaccaggaaaactcaggacagtatcagttactgaggtgggtccaccaacagagtgttttgtcttccatgctcgagcaagagagtacagattaccgtgttcagagcatgaaaaagggagaagggtcatgtgtatcgaactggttgccaaccgattcctacgcaggatggttcgggttcttgtggcaacctcaattagggaagccgctgcaggtgcagatgaggacgcattgctaaaactgatggatgcaacatgcagacgtgctactgcccccccagctccacccgatggtttatgcctcgttgatgttggttatgaagaattcgacccgctagattgcctcatctcgaaggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

296

Amino Acids

33.07

Weight (kDa)

8.28

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35400 AT5G35400
fragaria_vesca	FvH4_4g06050 FvH4_4g06050
malus_domestica	MD13G1232500.v1.1
prunus_persica	Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1
pyrus_communis	pycom13g20490
rosa_chinensis	RchiOBHm_Chr4g0397611
rosa_laevigata	RLG00000009424
rosa_multiflora	Rmu_sc0002729.1_g000001 Rmu_sc0005653.1_g000002
rosa_roxburghii	Rroxscaffold_5G00342420
rosa_rugosa	Rorug03G0342300 Rorug03G0342400
rosa_samantha	Rh4AG079300 Rh4BG077200 Rh4CG084900 Rh4DG072300
rosa_wichuraiana	Rw4G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	734
Acc36I	ACCTGC	1 cut(s)	734
AccB7I	CCANNNNNTGG	2 cut(s)	99, 821
AccII	CGCG	1 cut(s)	55
AciI	CCGC	2 cut(s)	738, 863
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	4 cut(s)	192, 217, 356, 854
AfaI	GTAC	2 cut(s)	169, 620
AfiI	CCNNNNNNNGG	5 cut(s)	99, 294, 410, 729, 821
AgsI	TTSAA	1 cut(s)	259
AjiI	CACGTC	1 cut(s)	794
AjnI	CCWGG	2 cut(s)	92, 538
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	3 cut(s)	75, 521, 812
AluI	AGCT	3 cut(s)	75, 521, 812
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	2 cut(s)	385, 566
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	4 cut(s)	307, 416, 533, 740
ApoI	RAATTY	4 cut(s)	192, 217, 356, 854
AspLEI	GCGC	2 cut(s)	55, 57
AspS9I	GGNCC	3 cut(s)	313, 435, 575
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	3 cut(s)	313, 435, 575
BbsI	GAAGAC	1 cut(s)	589
BbvI	GCAGC	4 cut(s)	319, 403, 545, 727
BccI	CCATC	4 cut(s)	287, 694, 769, 815
BcgI	CGANNNNNNTGC	4 cut(s)	26, 60, 659, 693
BciT130I	CCWGG	2 cut(s)	94, 540
BfaI	CTAG	1 cut(s)	866
BfmI	CTRYAG	1 cut(s)	741
BfuAI	ACCTGC	1 cut(s)	734
BisI	GCNGC	5 cut(s)	308, 417, 534, 738, 741
BlsI	GCNGC	5 cut(s)	309, 418, 535, 739, 742
Bme1390I	CCNGG	2 cut(s)	94, 540
Bme18I	GGWCC	3 cut(s)	313, 435, 575
BmeT110I	CYCGRG	1 cut(s)	606
BmgBI	CACGTC	1 cut(s)	794
BmgT120I	GGNCC	3 cut(s)	313, 435, 575
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	2 cut(s)	94, 540
BmsI	GCATC	2 cut(s)	372, 769
BpiI	GAAGAC	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	489
BsaJI	CCNNGG	2 cut(s)	66, 98
Bsc4I	CCNNNNNNNGG	5 cut(s)	99, 294, 410, 729, 821
Bse1I	ACTGG	2 cut(s)	79, 678
Bse3DI	GCAATG	1 cut(s)	761
BseBI	CCWGG	2 cut(s)	94, 540
BseDI	CCNNGG	2 cut(s)	66, 98
BseGI	GGATG	3 cut(s)	499, 705, 784
BseLI	CCNNNNNNNGG	5 cut(s)	99, 294, 410, 729, 821
BseMI	GCAATG	1 cut(s)	761
BseMII	CTCAG	2 cut(s)	558, 562
BseNI	ACTGG	2 cut(s)	79, 678
BsePI	GCGCGC	1 cut(s)	53
BseXI	GCAGC	4 cut(s)	319, 403, 545, 727
BseYI	CCCAGC	1 cut(s)	808
BsgI	GTGCAG	2 cut(s)	552, 768
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	311, 429
BslI	CCNNNNNNNGG	5 cut(s)	99, 294, 410, 729, 821
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	606
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	2 cut(s)	738, 863
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	559, 561
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	576
BspMAI	CTGCAG	1 cut(s)	745
BspMI	ACCTGC	1 cut(s)	734
BspPI	GGATC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	761
BsrI	ACTGG	2 cut(s)	79, 678
BssECI	CCNNGG	2 cut(s)	66, 98
BssHII	GCGCGC	1 cut(s)	53
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	2 cut(s)	66, 98
Bst2UI	CCWGG	2 cut(s)	94, 540
Bst4CI	ACNGT	4 cut(s)	325, 424, 556, 630
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	548, 567
BstENI	CCTNNNNNAGG	1 cut(s)	727
BstF5I	GGATG	3 cut(s)	499, 705, 784
BstFNI	CGCG	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	55, 57
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	4 cut(s)	307, 425, 746, 809
BstNI	CCWGG	2 cut(s)	94, 540
BstNSI	RCATGY	1 cut(s)	789
BstSCI	CCNGG	2 cut(s)	92, 538
BstSFI	CTRYAG	1 cut(s)	741
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	319, 403, 545, 727
BstV2I	GAAGAC	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	794
BtsCI	GGATG	3 cut(s)	499, 705, 784
BtsIMutI	CAGTG	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	1 cut(s)	55
CaiI	CAGNNNCTG	2 cut(s)	385, 566
CfoI	GCGC	2 cut(s)	55, 57
Cfr13I	GGNCC	3 cut(s)	313, 435, 575
CpoI	CGGWCCG	1 cut(s)	435
CseI	GACGC	1 cut(s)	767
Csp6I	GTAC	2 cut(s)	168, 619
CspI	CGGWCCG	1 cut(s)	435
CviAII	CATG	6 cut(s)	85, 278, 602, 641, 661, 786
CviQI	GTAC	2 cut(s)	168, 619
DdeI	CTNAG	2 cut(s)	548, 567
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	66, 98
Eco147I	AGGCCT	1 cut(s)	97
Eco47I	GGWCC	3 cut(s)	313, 435, 575
Eco88I	CYCGRG	1 cut(s)	606
EcoNI	CCTNNNNNAGG	1 cut(s)	727
EcoRI	GAATTC	1 cut(s)	854
EcoRII	CCWGG	2 cut(s)	92, 538
EcoT14I	CCWWGG	2 cut(s)	66, 98
ErhI	CCWWGG	2 cut(s)	66, 98
FaeI	CATG	6 cut(s)	88, 281, 605, 644, 664, 789
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	6 cut(s)	84, 277, 601, 640, 660, 785
FauI	CCCGC	1 cut(s)	870
Fnu4HI	GCNGC	5 cut(s)	308, 417, 534, 738, 741
FokI	GGATG	3 cut(s)	506, 712, 791
Fsp4HI	GCNGC	5 cut(s)	308, 417, 534, 738, 741
FspBI	CTAG	1 cut(s)	866
GlaI	GCGC	2 cut(s)	54, 56
GluI	GCNGC	5 cut(s)	308, 417, 534, 738, 741
GsaI	CCCAGC	1 cut(s)	812
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	311, 429
HgaI	GACGC	1 cut(s)	767
HhaI	GCGC	2 cut(s)	55, 57
Hin1II	CATG	6 cut(s)	88, 281, 605, 644, 664, 789
Hin6I	GCGC	2 cut(s)	53, 55
HinP1I	GCGC	2 cut(s)	53, 55
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	3 cut(s)	284, 447, 687
HpaII	CCGG	2 cut(s)	311, 429
Hpy166II	GTNNAC	1 cut(s)	578
Hpy188I	TCNGA	3 cut(s)	127, 144, 637
Hpy188III	TCNNGA	4 cut(s)	259, 506, 550, 880
Hpy8I	GTNNAC	1 cut(s)	578
HpyAV	CCTTC	3 cut(s)	404, 648, 877
HpyCH4III	ACNGT	4 cut(s)	325, 424, 556, 630
HpyCH4IV	ACGT	2 cut(s)	254, 793
HpyCH4V	TGCA	8 cut(s)	47, 499, 515, 533, 743, 749, 782, 789
HpyF10VI	GCNNNNNNNGC	4 cut(s)	307, 425, 746, 809
HpyF3I	CTNAG	2 cut(s)	548, 567
HpySE526I	ACGT	2 cut(s)	254, 793
Hsp92II	CATG	6 cut(s)	88, 281, 605, 644, 664, 789
HspAI	GCGC	2 cut(s)	53, 55
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	4 cut(s)	319, 403, 545, 727
LweI	GCATC	2 cut(s)	372, 769
MaeI	CTAG	1 cut(s)	866
MaeII	ACGT	2 cut(s)	254, 793
MaeIII	GTNAC	2 cut(s)	448, 562
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	589, 863
MluCI	AATT	5 cut(s)	192, 217, 356, 726, 854
MlyI	GAGTC	1 cut(s)	456
MnlI	CCTC	7 cut(s)	231, 326, 562, 733, 748, 842, 884
MseI	TTAA	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	2 cut(s)	311, 429
MspR9I	CCNGG	2 cut(s)	94, 540
MvaI	CCWGG	2 cut(s)	94, 540
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	4 cut(s)	307, 425, 746, 809
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	6 cut(s)	88, 281, 605, 644, 664, 789
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	448
NspI	RCATGY	1 cut(s)	789
PaeR7I	CTCGAG	1 cut(s)	606
PaqCI	CACCTGC	1 cut(s)	734
PauI	GCGCGC	1 cut(s)	53
PceI	AGGCCT	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	284, 687
PflMI	CCANNNNNTGG	2 cut(s)	99, 821
PkrI	GCNGC	5 cut(s)	309, 418, 535, 739, 742
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	92, 538
PspFI	CCCAGC	1 cut(s)	808
PspGI	CCWGG	2 cut(s)	92, 538
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	3 cut(s)	313, 435, 575
PspXI	VCTCGAGB	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	745
PstNI	CAGNNNCTG	2 cut(s)	385, 566
PteI	GCGCGC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	169, 620
RsaNI	GTAC	2 cut(s)	168, 619
Rsr2I	CGGWCCG	1 cut(s)	435
RsrII	CGGWCCG	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	5 cut(s)	308, 417, 534, 738, 741
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	3 cut(s)	313, 435, 575
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	94, 540
SfaNI	GCATC	2 cut(s)	372, 769
SfcI	CTRYAG	1 cut(s)	741
Sfr274I	CTCGAG	1 cut(s)	606
SinI	GGWCC	3 cut(s)	313, 435, 575
SlaI	CTCGAG	1 cut(s)	606
SmlI	CTYRAG	2 cut(s)	504, 606
SmoI	CTYRAG	2 cut(s)	504, 606
Sse9I	AATT	5 cut(s)	192, 217, 356, 726, 854
SseBI	AGGCCT	1 cut(s)	97
SsiI	CCGC	2 cut(s)	738, 863
SspMI	CTAG	1 cut(s)	866
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	92, 538
StyI	CCWWGG	2 cut(s)	66, 98
TaaI	ACNGT	4 cut(s)	325, 424, 556, 630
TaiI	ACGT	2 cut(s)	257, 796
TaqI	TCGA	5 cut(s)	114, 607, 669, 858, 881
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	5 cut(s)	192, 217, 356, 726, 854
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	1 cut(s)	740
TfiI	GAWTC	2 cut(s)	284, 687
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	4 cut(s)	307, 416, 533, 740
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	73, 657, 864
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	1 cut(s)	328
Van91I	CCANNNNNTGG	2 cut(s)	99, 821
VpaK11BI	GGWCC	3 cut(s)	313, 435, 575
XagI	CCTNNNNNAGG	1 cut(s)	727
XapI	RAATTY	4 cut(s)	192, 217, 356, 854
XceI	RCATGY	1 cut(s)	789
XhoI	CTCGAG	1 cut(s)	606
XspI	CTAG	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.