Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006106

Physical Location & Seq

Genomic Coordinates Forward (+)

4564070 .. 4569477

Gene Structure 5408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G064000.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAAAACAAGGTTTTAATTCAGTACAACCACACGGATCCCTGCTCATTTGCGCGTTGGACTACCAAAGAATGCTTCCAGTTCATGTCTGCCAGGCCATGGCAACAAGTTATGGATTTTTATTCGGATGTGGTGAAGGACCGCAAGCCCTTATCAGCGTTGTTGGGCAAAGCTTGTTTGAGTAAGAGTAACATTAACAATAGGCTAGAGAGTCTACCGCCATCTCAAGATAAGGGTGGGAGGTGGGCACGACTAACATTCAAGATTGTTGTTTCGTATCATGGTGGTTCCTTTGATGGCTGGCAAAGGCAGCCAGGCCTCAACACTGTTCAAAGTGTGGTGGAAAAATCTCTGGGAAAATTTGTTGATGAGAGGAAAGCGCAGATGCTGAAAGACAAAGGTTTGCCATTAGAAGGCGCTGCTCTTGTTGCCGGACGCACTGACAAAGGAGTGACTGCCGTTCATCAAGTTTGTTCTTTTTATACTTGGAGAAAGGATGTCAAATCTCAAGATATTACAGATGCCATCAATAGTGCAGCACCAGGAAAACTCAGGGTCGTATCAGTTACTGAGGTATCACGTGCCTTCCATCCAAATTTTACTGCCAAATGGAGGCATTATTTATATATATTTCCATTTAATGATGAGGAGGACATGGAGCAAAGTAATCAGAGTGGAGAGAATGCTCAAAATTTTAAAAGTCTAGAGAATTATCATGAGCATAAAAATGGATGTGATCAATGCAATGAAGCAAATGTTGGGAACTTAGTTATCAACGATAACGAAGACCTTGAAACTCTGAAACCTCGGGAATTCACCGTAAGCAGGGTGAACCAACTTTTACAGAAACTAGAAGGAAAGTTATTATCGTATAAGATGTTTGCACGTGATACCAAACCATCCAGAAATGAGGGTCCGCCAACAGAGTGTTTTCTCTACCATGCTCGAGCAAAAGAATCCAAACTACCATGTTCAGAGCATGAGAAAGGAAGAAGGGTTATGTGTATTGAACTTGTTGCTAATCGATTCTTACGCAGGATGGTTCGGGTTCTTGTGGCAACCTCAATAAGGGAAGCGGCTGCGGGTGCAGATGAGGATGCATTGCTAAAGCTGATGGATGCTACATGCAGACGTGCCACTGCTCCCCCGGCACCCCCTGATGGTTTATGTCTTGTTGATGTGGGTTATGAAGAATTTGATCCACAAGATTGCCTCATCTTGAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

410

Amino Acids

46.35

Weight (kDa)

8.17

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35400 AT5G35400
fragaria_vesca	FvH4_4g06050 FvH4_4g06050
malus_domestica	MD13G1232500.v1.1
prunus_persica	Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1
pyrus_communis	pycom13g20490
rosa_chinensis	RchiOBHm_Chr4g0397611
rosa_laevigata	RLG00000009424
rosa_multiflora	Rmu_sc0002729.1_g000001 Rmu_sc0005653.1_g000002
rosa_roxburghii	Rroxscaffold_5G00342420
rosa_rugosa	Rorug03G0342300 Rorug03G0342400
rosa_samantha	Rh4AG079300 Rh4BG077200 Rh4CG084900 Rh4DG072300
rosa_wichuraiana	Rw4G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1150
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	214
AccII	CGCG	1 cut(s)	55
AciI	CCGC	5 cut(s)	142, 218, 917, 1076, 1082
AclWI	GGATC	3 cut(s)	32, 45, 1193
AcsI	RAATTY	5 cut(s)	359, 595, 691, 812, 1193
AcvI	CACGTG	2 cut(s)	581, 887
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	6 cut(s)	99, 413, 612, 825, 1068, 1160
AgsI	TTSAA	5 cut(s)	262, 332, 794, 1010, 1222
AjiI	CACGTC	1 cut(s)	1133
AjnI	CCWGG	3 cut(s)	92, 313, 541
AjuI	GAANNNNNNNTTGG	4 cut(s)	59, 91, 741, 773
AluBI	AGCT	2 cut(s)	173, 1111
AluI	AGCT	2 cut(s)	173, 1111
AlwI	GGATC	3 cut(s)	32, 45, 1193
AlwNI	CAGNNNCTG	2 cut(s)	388, 569
Ama87I	CYCGRG	2 cut(s)	807, 945
AoxI	GGCC	2 cut(s)	95, 316
ApeKI	GCWGC	4 cut(s)	310, 419, 536, 1079
ApoI	RAATTY	5 cut(s)	359, 595, 691, 812, 1193
AspLEI	GCGC	3 cut(s)	55, 382, 419
AspS9I	GGNCC	2 cut(s)	139, 914
AsuC2I	CCSGG	1 cut(s)	1148
AsuHPI	GGTGA	3 cut(s)	145, 808, 841
AvaI	CYCGRG	2 cut(s)	807, 945
AvaII	GGWCC	2 cut(s)	139, 914
BaeGI	GKGCMC	1 cut(s)	250
BaeI	ACNNNNGTAYC	2 cut(s)	558, 591
BamHI	GGATCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	1150
BbrPI	CACGTG	2 cut(s)	581, 887
BbsI	GAAGAC	1 cut(s)	792
BbvI	GCAGC	4 cut(s)	322, 406, 548, 1066
BccI	CCATC	8 cut(s)	229, 290, 533, 597, 907, 1033, 1108, 1154
BceAI	ACGGC	1 cut(s)	443
BciT130I	CCWGG	3 cut(s)	94, 315, 543
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	1 cut(s)	1148
BfaI	CTAG	3 cut(s)	206, 704, 851
BfoI	RGCGCY	1 cut(s)	420
BisI	GCNGC	5 cut(s)	311, 420, 537, 1077, 1080
BlsI	GCNGC	5 cut(s)	312, 421, 538, 1078, 1081
Bme1390I	CCNGG	4 cut(s)	94, 315, 543, 1148
Bme18I	GGWCC	2 cut(s)	139, 914
BmeT110I	CYCGRG	2 cut(s)	807, 945
BmgBI	CACGTC	1 cut(s)	1133
BmgT120I	GGNCC	2 cut(s)	139, 914
BmiI	GGNNCC	4 cut(s)	39, 289, 915, 1152
BmrFI	CCNGG	4 cut(s)	94, 315, 543, 1148
BmsI	GCATC	4 cut(s)	375, 511, 1087, 1108
BpiI	GAAGAC	1 cut(s)	792
BpuEI	CTTGAG	2 cut(s)	210, 492
BpuMI	CCSGG	1 cut(s)	1148
Bsa29I	ATCGAT	1 cut(s)	1024
BsaAI	YACGTR	2 cut(s)	581, 887
BsaJI	CCNNGG	3 cut(s)	98, 806, 1146
Bsc4I	CCNNNNNNNGG	6 cut(s)	99, 413, 612, 825, 1068, 1160
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	2 cut(s)	751, 1100
BseBI	CCWGG	3 cut(s)	94, 315, 543
BseCI	ATCGAT	1 cut(s)	1024
BseDI	CCNNGG	3 cut(s)	98, 806, 1146
BseGI	GGATG	8 cut(s)	133, 502, 589, 737, 899, 1044, 1102, 1123
BseLI	CCNNNNNNNGG	6 cut(s)	99, 413, 612, 825, 1068, 1160
BseMI	GCAATG	2 cut(s)	751, 1100
BseMII	CTCAG	2 cut(s)	561, 565
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	4 cut(s)	322, 406, 548, 1066
BsgI	GTGCAG	2 cut(s)	555, 1107
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	97, 318
BshNI	GGYRCC	1 cut(s)	1150
BshVI	ATCGAT	1 cut(s)	1024
BsiHKCI	CYCGRG	2 cut(s)	807, 945
BsiSI	CCGG	2 cut(s)	432, 1148
BslI	CCNNNNNNNGG	6 cut(s)	99, 413, 612, 825, 1068, 1160
BsmI	GAATGC	2 cut(s)	77, 688
BsnI	GGCC	2 cut(s)	97, 318
BsoBI	CYCGRG	2 cut(s)	807, 945
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	37, 736, 1198
Bsp19I	CCATGG	1 cut(s)	98
BspACI	CCGC	5 cut(s)	142, 218, 917, 1076, 1082
BspANI	GGCC	2 cut(s)	97, 318
BspCNI	CTCAG	2 cut(s)	562, 564
BspDI	ATCGAT	1 cut(s)	1024
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	4 cut(s)	39, 289, 915, 1152
BspPI	GGATC	3 cut(s)	32, 45, 1193
BspT107I	GGYRCC	1 cut(s)	1150
BsrDI	GCAATG	2 cut(s)	751, 1100
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	98, 806, 1146
BssMI	GATC	3 cut(s)	37, 736, 1198
BssT1I	CCWWGG	1 cut(s)	98
Bst2UI	CCWGG	3 cut(s)	94, 315, 543
Bst4CI	ACNGT	2 cut(s)	328, 820
BstBAI	YACGTR	2 cut(s)	581, 887
BstC8I	GCNNGC	2 cut(s)	146, 302
BstDEI	CTNAG	3 cut(s)	551, 570, 766
BstDSI	CCRYGG	1 cut(s)	98
BstENI	CCTNNNNNAGG	1 cut(s)	1066
BstF5I	GGATG	8 cut(s)	133, 502, 589, 737, 899, 1044, 1102, 1123
BstFNI	CGCG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	3 cut(s)	55, 382, 419
BstKTI	GATC	3 cut(s)	40, 739, 1201
BstMBI	GATC	3 cut(s)	37, 736, 1198
BstMWI	GCNNNNNNNGC	4 cut(s)	310, 428, 1085, 1148
BstNI	CCWGG	3 cut(s)	94, 315, 543
BstNSI	RCATGY	1 cut(s)	1128
BstSCI	CCNGG	4 cut(s)	92, 313, 541, 1146
BstSLI	GKGCMC	1 cut(s)	250
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	322, 406, 548, 1066
BstV2I	GAAGAC	1 cut(s)	792
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	1024
BsuRI	GGCC	2 cut(s)	97, 318
BsuTUI	ATCGAT	1 cut(s)	1024
BtgI	CCRYGG	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	1133
BtsCI	GGATG	8 cut(s)	133, 502, 589, 737, 899, 1044, 1102, 1123
BtsI	GCAGTG	1 cut(s)	1137
BtsIMutI	CAGTG	3 cut(s)	324, 438, 1137
Cac8I	GCNNGC	2 cut(s)	146, 302
CaiI	CAGNNNCTG	2 cut(s)	388, 569
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	3 cut(s)	55, 382, 419
Cfr13I	GGNCC	2 cut(s)	139, 914
ClaI	ATCGAT	1 cut(s)	1024
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	9 cut(s)	85, 99, 281, 655, 716, 941, 969, 980, 1125
CviJI	RGCY	9 cut(s)	97, 148, 173, 205, 300, 313, 318, 1079, 1111
CviKI_1	RGCY	9 cut(s)	97, 148, 173, 205, 300, 313, 318, 1079, 1111
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	551, 570, 766
DpnI	GATC	3 cut(s)	39, 738, 1200
DpnII	GATC	3 cut(s)	37, 736, 1198
DraI	TTTAAA	1 cut(s)	697
EciI	GGCGGA	1 cut(s)	906
Eco130I	CCWWGG	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	318
Eco47I	GGWCC	2 cut(s)	139, 914
Eco72I	CACGTG	2 cut(s)	581, 887
Eco88I	CYCGRG	2 cut(s)	807, 945
EcoNI	CCTNNNNNAGG	1 cut(s)	1066
EcoRI	GAATTC	1 cut(s)	812
EcoRII	CCWGG	3 cut(s)	92, 313, 541
EcoT14I	CCWWGG	1 cut(s)	98
EcoT22I	ATGCAT	1 cut(s)	1102
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	9 cut(s)	88, 102, 284, 658, 719, 944, 972, 983, 1128
FatI	CATG	9 cut(s)	84, 98, 280, 654, 715, 940, 968, 979, 1124
FauI	CCCGC	1 cut(s)	1075
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	5 cut(s)	311, 420, 537, 1077, 1080
FokI	GGATG	8 cut(s)	140, 509, 576, 744, 886, 1051, 1109, 1130
Fsp4HI	GCNGC	5 cut(s)	311, 420, 537, 1077, 1080
FspBI	CTAG	3 cut(s)	206, 704, 851
GlaI	GCGC	3 cut(s)	54, 381, 418
GluI	GCNGC	5 cut(s)	311, 420, 537, 1077, 1080
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	97, 318
HapII	CCGG	2 cut(s)	432, 1148
HgaI	GACGC	1 cut(s)	444
HhaI	GCGC	3 cut(s)	55, 382, 419
Hin1II	CATG	9 cut(s)	88, 102, 284, 658, 719, 944, 972, 983, 1128
Hin6I	GCGC	3 cut(s)	53, 380, 417
HinP1I	GCGC	3 cut(s)	53, 380, 417
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	3 cut(s)	211, 956, 1026
HpaII	CCGG	2 cut(s)	432, 1148
HphI	GGTGA	3 cut(s)	145, 808, 841
Hpy166II	GTNNAC	2 cut(s)	215, 832
Hpy188I	TCNGA	4 cut(s)	127, 672, 801, 976
Hpy188III	TCNNGA	8 cut(s)	227, 262, 509, 704, 716, 809, 903, 1219
Hpy8I	GTNNAC	2 cut(s)	215, 832
HpyAV	CCTTC	5 cut(s)	130, 407, 595, 848, 987
HpyCH4III	ACNGT	2 cut(s)	328, 820
HpyCH4IV	ACGT	3 cut(s)	580, 886, 1132
HpyCH4V	TGCA	6 cut(s)	536, 744, 884, 1088, 1100, 1128
HpyF10VI	GCNNNNNNNGC	4 cut(s)	310, 428, 1085, 1148
HpyF3I	CTNAG	3 cut(s)	551, 570, 766
HpySE526I	ACGT	3 cut(s)	580, 886, 1132
Hsp92II	CATG	9 cut(s)	88, 102, 284, 658, 719, 944, 972, 983, 1128
HspAI	GCGC	3 cut(s)	53, 380, 417
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	3 cut(s)	37, 736, 1198
LmnI	GCTCC	2 cut(s)	658, 1147
Lsp1109I	GCAGC	4 cut(s)	322, 406, 548, 1066
LweI	GCATC	4 cut(s)	375, 511, 1087, 1108
MaeI	CTAG	3 cut(s)	206, 704, 851
MaeII	ACGT	3 cut(s)	580, 886, 1132
MaeIII	GTNAC	3 cut(s)	188, 451, 565
MalI	GATC	3 cut(s)	39, 738, 1200
MboI	GATC	3 cut(s)	37, 736, 1198
MboII	GAAGA	3 cut(s)	797, 1002, 1202
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	7 cut(s)	18, 359, 595, 691, 709, 812, 1193
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	38
Mph1103I	ATGCAT	1 cut(s)	1102
MseI	TTAA	4 cut(s)	17, 195, 639, 696
MslI	CAYNNNNRTG	1 cut(s)	726
MspI	CCGG	2 cut(s)	432, 1148
MspR9I	CCNGG	4 cut(s)	94, 315, 543, 1148
Mva1269I	GAATGC	2 cut(s)	77, 688
MvaI	CCWGG	3 cut(s)	94, 315, 543
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	4 cut(s)	310, 428, 1085, 1148
NciI	CCSGG	1 cut(s)	1148
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	3 cut(s)	37, 736, 1198
NlaIII	CATG	9 cut(s)	88, 102, 284, 658, 719, 944, 972, 983, 1128
NlaIV	GGNNCC	4 cut(s)	39, 289, 915, 1152
NmuCI	GTSAC	1 cut(s)	451
NsiI	ATGCAT	1 cut(s)	1102
NspI	RCATGY	1 cut(s)	1128
PaeR7I	CTCGAG	1 cut(s)	945
PagI	TCATGA	1 cut(s)	715
PceI	AGGCCT	1 cut(s)	318
PctI	GAATGC	2 cut(s)	77, 688
PfeI	GAWTC	2 cut(s)	956, 1026
PflMI	CCANNNNNTGG	1 cut(s)	99
PkrI	GCNGC	5 cut(s)	312, 421, 538, 1078, 1081
PleI	GAGTC	1 cut(s)	219
PmaCI	CACGTG	2 cut(s)	581, 887
PmlI	CACGTG	2 cut(s)	581, 887
PpsI	GAGTC	1 cut(s)	219
Ppu21I	YACGTR	2 cut(s)	581, 887
Psp6I	CCWGG	3 cut(s)	92, 313, 541
PspCI	CACGTG	2 cut(s)	581, 887
PspGI	CCWGG	3 cut(s)	92, 313, 541
PspN4I	GGNNCC	4 cut(s)	39, 289, 915, 1152
PspPI	GGNCC	2 cut(s)	139, 914
PspXI	VCTCGAGB	1 cut(s)	945
PstNI	CAGNNNCTG	2 cut(s)	388, 569
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	726
SaqAI	TTAA	4 cut(s)	17, 195, 639, 696
SatI	GCNGC	5 cut(s)	311, 420, 537, 1077, 1080
Sau3AI	GATC	3 cut(s)	37, 736, 1198
Sau96I	GGNCC	2 cut(s)	139, 914
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	4 cut(s)	94, 315, 543, 1148
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	4 cut(s)	375, 511, 1087, 1108
Sfr274I	CTCGAG	1 cut(s)	945
SinI	GGWCC	2 cut(s)	139, 914
SlaI	CTCGAG	1 cut(s)	945
SmiMI	CAYNNNNRTG	1 cut(s)	726
SmlI	CTYRAG	3 cut(s)	225, 507, 945
SmoI	CTYRAG	3 cut(s)	225, 507, 945
Sse9I	AATT	7 cut(s)	18, 359, 595, 691, 709, 812, 1193
SseBI	AGGCCT	1 cut(s)	318
SsiI	CCGC	5 cut(s)	142, 218, 917, 1076, 1082
SspMI	CTAG	3 cut(s)	206, 704, 851
StuI	AGGCCT	1 cut(s)	318
StyD4I	CCNGG	4 cut(s)	92, 313, 541, 1146
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	328, 820
TaiI	ACGT	3 cut(s)	583, 889, 1135
TaqI	TCGA	2 cut(s)	946, 1024
TasI	AATT	7 cut(s)	18, 359, 595, 691, 709, 812, 1193
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	1 cut(s)	1079
TfiI	GAWTC	2 cut(s)	956, 1026
Tru1I	TTAA	4 cut(s)	17, 195, 639, 696
Tru9I	TTAA	4 cut(s)	17, 195, 639, 696
TscAI	CASTG	3 cut(s)	331, 445, 1144
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	4 cut(s)	310, 419, 536, 1079
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	4 cut(s)	73, 452, 762, 1203
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	3 cut(s)	331, 445, 1144
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	139, 914
XagI	CCTNNNNNAGG	1 cut(s)	1066
XapI	RAATTY	5 cut(s)	359, 595, 691, 812, 1193
XbaI	TCTAGA	1 cut(s)	703
XceI	RCATGY	1 cut(s)	1128
XhoI	CTCGAG	1 cut(s)	945
XmiI	GTMKAC	1 cut(s)	214
XspI	CTAG	3 cut(s)	206, 704, 851
Zsp2I	ATGCAT	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.