pycom13g20490

tRNA pseudouridine synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
16617520 .. 16622239
4720 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g20490.7

Sequence Viewer

Length: 1233 bp
ATGGAGAAGAAGGTTTTGGTTCACTACAACCACACCGATCCCTGCGCATTTGCACGCTGGACTACCAAAGAAAGCTTCCAGTTCATGGCCGCCCGGCCATGGCAACAGGTCATCGATTTTTACTCCTACGTGGTCACGGGCCGGAAGCCCCTGTCCGCCTTGTTGGGCAATGCTTGTTTGACTAGGAGTAATTTATGCAATAGGCTGGAGAGTGTTCCGCCTTCTCAAGATAAGGGTGGGAGGTGGGCTCGACTGACATTCAAGATTATTGTTTCGTACCATGGCGGTTCGTTTGATGGGTGGCAGAAGCAGCCAGGACTCAATACTGTTCAAAGTGTGGTGGAAAAATCTCTGGGGAAATTTGTTGATGAGAGGAAAGCCAAGCAGCTGAGAGATAAAGGTTTACCATTAGAAGCGGCTGCTGTTGTAGCTGGGCGCACTGACAAAGGAGTGACTGCCCTTCATCAAGTTTGTTCTTTTTATACTTGGAATAAGGATGTTAAATCTCAAGATATTACAAATGCCATTAATAGTGCAGTACCAGGAAAACTCAGGGTTGTATCGGTTACAGAGGTATCAAGGACCTTCCATCCAAATTTTACTGCCAAATGGAGACGCTATGTATATATATTTCCATTTAATGATGAGGAGGACATGGAGCAAAGTAATCAGAGTGGAGGGAATGCTCAAAACTTTAAGAGTACACAAAATCATCATGAGAATGAAAATGGGTGTGATCAATGCAGTGAGACAAATGCTGGAAATTTAATTATCAATGATAATGAAGACATTGGAATCGAGAACAAACCTCAGAAATTCAGCTTAAGCAGGGTGAACCAACTTTTACAGAAATTAGAAGGAAAGTTATTATCATATAAGATGTTTGCACGTGATACCAAACCATCCAGAAATGTGGGTCCTCCAACAGAGTGTTTTGTCTTCCATGCTCGAGCTAAAGAATCCAAATTACCATGTTCAGAGCATGAAAGAGGAAGCAGAGTGATGTGCATTGAACTAGTTGCTAATCGATTCTTACGGAGGATGGTTCGGGTTCTTGTGGCAACTGCAATAAGGGAAGCAGCTGCAGGTGCAGATGAGGATGCATTGCTAAAGCTGATGGATGCTACATGCAGACGTGCCACTGCTCCACCGGCACCCCCTGATGGTTTATGTCTTGTTGATGTGGGTTATGAAGAATTTGATCCTCAAGATTGCCTTATCTCGAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

411

Amino Acids

46.05

Weight (kDa)

8.72

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1076
Acc16I TGCGCA 1 cut(s) 46
Acc36I ACCTGC 1 cut(s) 1076
AccB1I GGYRCC 1 cut(s) 1153
AccB7I CCANNNNNTGG 1 cut(s) 85
AciI CCGC 5 cut(s) 90, 156, 218, 285, 416
AclWI GGATC 2 cut(s) 32, 1196
AcoI YGGCCR 2 cut(s) 87, 95
AcsI RAATTY 5 cut(s) 359, 595, 763, 815, 1196
AcvI CACGTG 1 cut(s) 890
AfaI GTAC 3 cut(s) 278, 540, 703
AfiI CCNNNNNNNGG 3 cut(s) 85, 99, 1163
AflII CTTAAG 1 cut(s) 823
AgsI TTSAA 3 cut(s) 262, 332, 1013
AhlI ACTAGT 1 cut(s) 1015
AjiI CACGTC 1 cut(s) 1136
AjnI CCWGG 2 cut(s) 313, 541
AjuI GAANNNNNNNTTGG 3 cut(s) 31, 59, 91
AluBI AGCT 7 cut(s) 75, 388, 431, 822, 953, 1082, 1114
AluI AGCT 7 cut(s) 75, 388, 431, 822, 953, 1082, 1114
Alw26I GTCTC 2 cut(s) 607, 743
AlwI GGATC 2 cut(s) 32, 1196
Ama87I CYCGRG 1 cut(s) 948
AoxI GGCC 3 cut(s) 87, 95, 139
ApeKI GCWGC 5 cut(s) 310, 385, 419, 1079, 1082
ApoI RAATTY 5 cut(s) 359, 595, 763, 815, 1196
AseI ATTAAT 1 cut(s) 528
AspLEI GCGC 2 cut(s) 47, 438
AspS9I GGNCC 3 cut(s) 139, 582, 917
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 844
AvaI CYCGRG 1 cut(s) 948
AvaII GGWCC 2 cut(s) 582, 917
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BanI GGYRCC 1 cut(s) 1153
BanII GRGCYC 1 cut(s) 250
BbrPI CACGTG 1 cut(s) 890
BbsI GAAGAC 2 cut(s) 792, 931
BbvI GCAGC 5 cut(s) 322, 397, 406, 1069, 1091
BccI CCATC 6 cut(s) 290, 597, 910, 1036, 1111, 1157
BciT130I CCWGG 2 cut(s) 315, 543
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 607, 743
BcuI ACTAGT 1 cut(s) 1015
BfaI CTAG 2 cut(s) 183, 1016
BfmI CTRYAG 1 cut(s) 1083
BfrI CTTAAG 1 cut(s) 823
BfuAI ACCTGC 1 cut(s) 1076
BisI GCNGC 7 cut(s) 90, 311, 386, 417, 420, 1080, 1083
BlsI GCNGC 7 cut(s) 91, 312, 387, 418, 421, 1081, 1084
Bme1390I CCNGG 3 cut(s) 94, 315, 543
Bme18I GGWCC 2 cut(s) 582, 917
BmeT110I CYCGRG 1 cut(s) 948
BmgBI CACGTC 1 cut(s) 1136
BmgT120I GGNCC 3 cut(s) 139, 582, 917
BmiI GGNNCC 2 cut(s) 918, 1155
BmrFI CCNGG 3 cut(s) 94, 315, 543
BmsI GCATC 2 cut(s) 1090, 1111
BpiI GAAGAC 2 cut(s) 792, 931
BplI GAGNNNNNCTC 2 cut(s) 232, 264
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 3 cut(s) 210, 492, 1191
BpuMI CCSGG 1 cut(s) 94
Bsa29I ATCGAT 2 cut(s) 114, 1027
BsaAI YACGTR 2 cut(s) 130, 890
BsaJI CCNNGG 2 cut(s) 98, 280
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 99, 1163
Bse118I RCCGGY 1 cut(s) 1150
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 2 cut(s) 175, 1103
BseBI CCWGG 2 cut(s) 315, 543
BseCI ATCGAT 2 cut(s) 114, 1027
BseDI CCNNGG 2 cut(s) 98, 280
BseGI GGATG 6 cut(s) 502, 589, 902, 1047, 1105, 1126
BseLI CCNNNNNNNGG 3 cut(s) 85, 99, 1163
BseMI GCAATG 2 cut(s) 175, 1103
BseMII CTCAG 3 cut(s) 380, 565, 824
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 5 cut(s) 322, 397, 406, 1069, 1091
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 2 cut(s) 555, 1110
BshFI GGCC 3 cut(s) 89, 97, 141
BshNI GGYRCC 1 cut(s) 1153
BshVI ATCGAT 2 cut(s) 114, 1027
BsiHKCI CYCGRG 1 cut(s) 948
BsiSI CCGG 3 cut(s) 94, 142, 1151
BslI CCNNNNNNNGG 3 cut(s) 85, 99, 1163
BsmAI GTCTC 2 cut(s) 607, 743
BsmBI CGTCTC 1 cut(s) 607
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 3 cut(s) 89, 97, 141
BsoBI CYCGRG 1 cut(s) 948
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 37, 736, 1201
Bsp19I CCATGG 2 cut(s) 98, 280
BspACI CCGC 5 cut(s) 90, 156, 218, 285, 416
BspANI GGCC 3 cut(s) 89, 97, 141
BspCNI CTCAG 3 cut(s) 381, 564, 823
BspDI ATCGAT 2 cut(s) 114, 1027
BspHI TCATGA 1 cut(s) 715
BspLI GGNNCC 2 cut(s) 918, 1155
BspMAI CTGCAG 1 cut(s) 1087
BspMI ACCTGC 1 cut(s) 1076
BspPI GGATC 2 cut(s) 32, 1196
BspT107I GGYRCC 1 cut(s) 1153
BspTI CTTAAG 1 cut(s) 823
BsrDI GCAATG 2 cut(s) 175, 1103
BsrFI RCCGGY 1 cut(s) 1150
BsrI ACTGG 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 1150
BssECI CCNNGG 2 cut(s) 98, 280
BssMI GATC 3 cut(s) 37, 736, 1201
BssT1I CCWWGG 2 cut(s) 98, 280
Bst2UI CCWGG 2 cut(s) 315, 543
Bst4CI ACNGT 1 cut(s) 328
BstAFI CTTAAG 1 cut(s) 823
BstBAI YACGTR 2 cut(s) 130, 890
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 3 cut(s) 389, 551, 810
BstDSI CCRYGG 2 cut(s) 98, 280
BstF5I GGATG 6 cut(s) 502, 589, 902, 1047, 1105, 1126
BstHHI GCGC 2 cut(s) 47, 438
BstKTI GATC 3 cut(s) 40, 739, 1204
BstMAI GTCTC 2 cut(s) 607, 743
BstMBI GATC 3 cut(s) 37, 736, 1201
BstMWI GCNNNNNNNGC 4 cut(s) 310, 428, 1088, 1151
BstNI CCWGG 2 cut(s) 315, 543
BstNSI RCATGY 1 cut(s) 1131
BstSCI CCNGG 3 cut(s) 92, 313, 541
BstSFI CTRYAG 1 cut(s) 1083
BstV1I GCAGC 5 cut(s) 322, 397, 406, 1069, 1091
BstV2I GAAGAC 2 cut(s) 792, 931
BstXI CCANNNNNNTGG 1 cut(s) 913
Bsu15I ATCGAT 2 cut(s) 114, 1027
BsuRI GGCC 3 cut(s) 89, 97, 141
BsuTUI ATCGAT 2 cut(s) 114, 1027
BtgI CCRYGG 2 cut(s) 98, 280
BtrI CACGTC 1 cut(s) 1136
BtsCI GGATG 6 cut(s) 502, 589, 902, 1047, 1105, 1126
BtsI GCAGTG 2 cut(s) 751, 1140
BtsIMutI CAGTG 3 cut(s) 438, 751, 1140
BveI ACCTGC 1 cut(s) 1076
Cac8I GCNNGC 1 cut(s) 55
CciI TCATGA 1 cut(s) 715
CfoI GCGC 2 cut(s) 47, 438
Cfr10I RCCGGY 1 cut(s) 1150
Cfr13I GGNCC 3 cut(s) 139, 582, 917
ClaI ATCGAT 2 cut(s) 114, 1027
CseI GACGC 1 cut(s) 624
Csp6I GTAC 3 cut(s) 277, 539, 702
CviAII CATG 9 cut(s) 85, 99, 281, 655, 716, 944, 972, 983, 1128
CviQI GTAC 3 cut(s) 277, 539, 702
DdeI CTNAG 3 cut(s) 389, 551, 810
DpnI GATC 3 cut(s) 39, 738, 1203
DpnII GATC 3 cut(s) 37, 736, 1201
EaeI YGGCCR 2 cut(s) 87, 95
EciI GGCGGA 2 cut(s) 145, 207
Eco130I CCWWGG 2 cut(s) 98, 280
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 582, 917
Eco72I CACGTG 1 cut(s) 890
Eco88I CYCGRG 1 cut(s) 948
EcoO109I RGGNCCY 2 cut(s) 582, 917
EcoRII CCWGG 2 cut(s) 313, 541
EcoT14I CCWWGG 2 cut(s) 98, 280
EcoT22I ATGCAT 1 cut(s) 1105
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 2 cut(s) 98, 280
Esp3I CGTCTC 1 cut(s) 607
FaeI CATG 9 cut(s) 88, 102, 284, 658, 719, 947, 975, 986, 1131
FalI AAGNNNNNCTT 2 cut(s) 1200, 1232
FatI CATG 9 cut(s) 84, 98, 280, 654, 715, 943, 971, 982, 1127
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 7 cut(s) 90, 311, 386, 417, 420, 1080, 1083
FokI GGATG 6 cut(s) 509, 576, 889, 1054, 1112, 1133
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 7 cut(s) 90, 311, 386, 417, 420, 1080, 1083
FspBI CTAG 2 cut(s) 183, 1016
FspI TGCGCA 1 cut(s) 46
GlaI GCGC 2 cut(s) 46, 437
GluI GCNGC 7 cut(s) 90, 311, 386, 417, 420, 1080, 1083
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 3 cut(s) 89, 97, 141
HapII CCGG 3 cut(s) 94, 142, 1151
HgaI GACGC 1 cut(s) 624
HhaI GCGC 2 cut(s) 47, 438
Hin1II CATG 9 cut(s) 88, 102, 284, 658, 719, 947, 975, 986, 1131
Hin6I GCGC 2 cut(s) 45, 436
HinP1I GCGC 2 cut(s) 45, 436
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 4 cut(s) 318, 795, 959, 1029
HpaII CCGG 3 cut(s) 94, 142, 1151
HphI GGTGA 1 cut(s) 844
Hpy166II GTNNAC 4 cut(s) 22, 404, 704, 835
Hpy188I TCNGA 3 cut(s) 672, 813, 979
Hpy188III TCNNGA 8 cut(s) 227, 262, 509, 716, 799, 906, 1208, 1222
Hpy8I GTNNAC 4 cut(s) 22, 404, 704, 835
HpyAV CCTTC 6 cut(s) 4, 231, 470, 595, 851, 1219
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 3 cut(s) 129, 889, 1135
HpyF10VI GCNNNNNNNGC 4 cut(s) 310, 428, 1088, 1151
HpyF3I CTNAG 3 cut(s) 389, 551, 810
HpySE526I ACGT 3 cut(s) 129, 889, 1135
Hsp92II CATG 9 cut(s) 88, 102, 284, 658, 719, 947, 975, 986, 1131
HspAI GCGC 2 cut(s) 45, 436
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 3 cut(s) 37, 736, 1201
LmnI GCTCC 2 cut(s) 658, 1150
Lsp1109I GCAGC 5 cut(s) 322, 397, 406, 1069, 1091
LweI GCATC 2 cut(s) 1090, 1111
MaeI CTAG 2 cut(s) 183, 1016
MaeII ACGT 3 cut(s) 129, 889, 1135
MaeIII GTNAC 3 cut(s) 133, 451, 565
MalI GATC 3 cut(s) 39, 738, 1203
MboI GATC 3 cut(s) 37, 736, 1201
MboII GAAGA 4 cut(s) 19, 797, 931, 1205
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 9 cut(s) 190, 359, 595, 763, 768, 815, 851, 965, 1196
MlyI GAGTC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 947
Mph1103I ATGCAT 1 cut(s) 1105
MseI TTAA 6 cut(s) 501, 528, 639, 696, 767, 824
MslI CAYNNNNRTG 1 cut(s) 720
MspA1I CMGCKG 2 cut(s) 388, 1082
MspCI CTTAAG 1 cut(s) 823
MspI CCGG 3 cut(s) 94, 142, 1151
MspR9I CCNGG 3 cut(s) 94, 315, 543
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 2 cut(s) 315, 543
MwoI GCNNNNNNNGC 4 cut(s) 310, 428, 1088, 1151
NciI CCSGG 1 cut(s) 94
NcoI CCATGG 2 cut(s) 98, 280
NdeII GATC 3 cut(s) 37, 736, 1201
NlaIII CATG 9 cut(s) 88, 102, 284, 658, 719, 947, 975, 986, 1131
NlaIV GGNNCC 2 cut(s) 918, 1155
NmuCI GTSAC 2 cut(s) 133, 451
NsbI TGCGCA 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 1105
NspI RCATGY 1 cut(s) 1131
PaeR7I CTCGAG 1 cut(s) 948
PagI TCATGA 1 cut(s) 715
PaqCI CACCTGC 1 cut(s) 1076
PctI GAATGC 1 cut(s) 688
PfeI GAWTC 3 cut(s) 795, 959, 1029
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 7 cut(s) 91, 312, 387, 418, 421, 1081, 1084
PleI GAGTC 1 cut(s) 312
PmaCI CACGTG 1 cut(s) 890
PmlI CACGTG 1 cut(s) 890
PpsI GAGTC 1 cut(s) 312
Ppu21I YACGTR 2 cut(s) 130, 890
PpuMI RGGWCCY 2 cut(s) 582, 917
PshBI ATTAAT 1 cut(s) 528
Psp5II RGGWCCY 2 cut(s) 582, 917
Psp6I CCWGG 2 cut(s) 313, 541
PspCI CACGTG 1 cut(s) 890
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 2 cut(s) 313, 541
PspN4I GGNNCC 2 cut(s) 918, 1155
PspPI GGNCC 3 cut(s) 139, 582, 917
PspPPI RGGWCCY 2 cut(s) 582, 917
PspXI VCTCGAGB 1 cut(s) 948
PstI CTGCAG 1 cut(s) 1087
PvuII CAGCTG 2 cut(s) 388, 1082
RsaI GTAC 3 cut(s) 278, 540, 703
RsaNI GTAC 3 cut(s) 277, 539, 702
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 6 cut(s) 501, 528, 639, 696, 767, 824
SatI GCNGC 7 cut(s) 90, 311, 386, 417, 420, 1080, 1083
Sau3AI GATC 3 cut(s) 37, 736, 1201
Sau96I GGNCC 3 cut(s) 139, 582, 917
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 3 cut(s) 94, 315, 543
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 2 cut(s) 1090, 1111
SfcI CTRYAG 1 cut(s) 1083
Sfr274I CTCGAG 1 cut(s) 948
SinI GGWCC 2 cut(s) 582, 917
SlaI CTCGAG 1 cut(s) 948
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 5 cut(s) 225, 507, 823, 948, 1206
SmoI CTYRAG 5 cut(s) 225, 507, 823, 948, 1206
SpeI ACTAGT 1 cut(s) 1015
Sse9I AATT 9 cut(s) 190, 359, 595, 763, 768, 815, 851, 965, 1196
SsiI CCGC 5 cut(s) 90, 156, 218, 285, 416
SspMI CTAG 2 cut(s) 183, 1016
StyD4I CCNGG 3 cut(s) 92, 313, 541
StyI CCWWGG 2 cut(s) 98, 280
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 3 cut(s) 132, 892, 1138
TaqI TCGA 6 cut(s) 114, 250, 798, 949, 1027, 1223
TasI AATT 9 cut(s) 190, 359, 595, 763, 768, 815, 851, 965, 1196
TatI WGTACW 1 cut(s) 701
TauI GCSGC 2 cut(s) 92, 419
TfiI GAWTC 3 cut(s) 795, 959, 1029
Tru1I TTAA 6 cut(s) 501, 528, 639, 696, 767, 824
Tru9I TTAA 6 cut(s) 501, 528, 639, 696, 767, 824
TscAI CASTG 3 cut(s) 445, 751, 1147
TseFI GTSAC 2 cut(s) 133, 451
TseI GCWGC 5 cut(s) 310, 385, 419, 1079, 1082
Tsp45I GTSAC 2 cut(s) 133, 451
TspDTI ATGAA 6 cut(s) 73, 452, 738, 798, 999, 1206
TspGWI ACGGA 1 cut(s) 1051
TspRI CASTG 3 cut(s) 445, 751, 1147
Van91I CCANNNNNTGG 1 cut(s) 85
Vha464I CTTAAG 1 cut(s) 823
VpaK11BI GGWCC 2 cut(s) 582, 917
VspI ATTAAT 1 cut(s) 528
XapI RAATTY 5 cut(s) 359, 595, 763, 815, 1196
XceI RCATGY 1 cut(s) 1131
XhoI CTCGAG 1 cut(s) 948
XspI CTAG 2 cut(s) 183, 1016
Zsp2I ATGCAT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.