Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006106

Physical Location & Seq

Genomic Coordinates Forward (+)

13556804 .. 13561313

Gene Structure 4510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGAGCAAGGTCTTTGTCCAATACAACCACACCGATCCCTGTGCATTTGCGCGCTGGACTACCAAGGAAAGCTTCCAGTTCATGTCAGCCAGGCCTTGGCAACAAGTCATCGACTTTTATTCCGATGTGGTAAAGGGTCAGAAGCCCTTGTCTGCGTTGTTGGGTACTTCTTGTTTGAGCAAAAACAGAATTTACAATAGTGTAGAGTGCGTAAATTCTCAAAATAAGGGTGGGAGGTGGGCAAGACTGACGTTCAAGATTGTGGTTTCGTATCATGGGGGTTCCTTTGATGGGTGGCAAAAGCAGCCGGACCTCTACACTGTCCAAAGTGTTGTTGAGCAATCTCTTGGGAAATTTGTTGATGACAAGAAAGCCCAGATGCTGAAAGACAAAGGGTTGCCATTGGAAGGGGCTGCTACTGTCGCCGGACGGACCGATAAAGGAGTCACAGCCCTTAATCAAGTTTGTTCTTTCTATACTTGGAGAAAGGATGTGCAATCTCAAGATATTGCAGAAGCTATAAGTAGTGCAGCACCGGGAAAACTCAGGACAGTATCAGTTACTGAGGTATCACGTGTATTCCATCCAAATTTTTCTGCCAAATGGAGGCGTTATTTGTATATATTTCCATTTAATGATGATGAGGAGGACAGGGAACAAAGCAATGAGACTGAAGAGAATACTCAAAAATTTAAGATTAATGATAATCATTATGAGCATGAAGTTGTATCTGATAAATGCAATGGGGAAAATGTTGGAAACTTAATCATCACTCATGATGACGTAGAGTTTGAAACTGAGAAGAAGCCACTGATGTTCAGCGTAAGCAGGGTGAACAAACTTTTACAGAAACTAGAAGGAAAGTTATTATCATATAAGCTATTTGCACGCGATACCAAAGCATCCAGAAATGAGGGTCCACCAACAGAGTGTTTTGTCTTCCATGCTCGAGCAAGAGAGTACAGATTACCGTGTTCAGTATGTATTTGCTATGTTACCAGTCTTGCAGAACTTTTCTCTTTTATATTTTCCCATCAAATATACATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

351

Amino Acids

40.19

Weight (kDa)

7.99

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35400 AT5G35400
fragaria_vesca	FvH4_4g06050 FvH4_4g06050
malus_domestica	MD13G1232500.v1.1
prunus_persica	Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1
pyrus_communis	pycom13g20490
rosa_chinensis	RchiOBHm_Chr4g0397611
rosa_laevigata	RLG00000009424
rosa_multiflora	Rmu_sc0002729.1_g000001 Rmu_sc0005653.1_g000002
rosa_roxburghii	Rroxscaffold_5G00342420
rosa_rugosa	Rorug03G0342300 Rorug03G0342400
rosa_samantha	Rh4AG079300 Rh4BG077200 Rh4CG084900 Rh4DG072300
rosa_wichuraiana	Rw4G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccII	CGCG	2 cut(s)	55, 894
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	5 cut(s)	192, 217, 356, 592, 692
AcuI	CTGAAG	1 cut(s)	696
AcvI	CACGTG	1 cut(s)	578
AfaI	GTAC	2 cut(s)	169, 965
AfiI	CCNNNNNNNGG	4 cut(s)	99, 294, 410, 609
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	2 cut(s)	259, 797
AjnI	CCWGG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	3 cut(s)	75, 521, 883
AluI	AGCT	3 cut(s)	75, 521, 883
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	2 cut(s)	385, 566
Ama87I	CYCGRG	1 cut(s)	951
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	307, 416, 533
ApoI	RAATTY	5 cut(s)	192, 217, 356, 592, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	776, 808
AseI	ATTAAT	1 cut(s)	702
AspLEI	GCGC	2 cut(s)	55, 57
AspS9I	GGNCC	3 cut(s)	313, 435, 920
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	847
AvaI	CYCGRG	1 cut(s)	951
AvaII	GGWCC	3 cut(s)	313, 435, 920
BaeI	ACNNNNGTAYC	2 cut(s)	555, 588
BbrPI	CACGTG	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	934
BbvI	GCAGC	3 cut(s)	319, 403, 545
BccI	CCATC	3 cut(s)	287, 594, 1044
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	1 cut(s)	857
BisI	GCNGC	3 cut(s)	308, 417, 534
BlsI	GCNGC	3 cut(s)	309, 418, 535
Bme1390I	CCNGG	2 cut(s)	94, 540
Bme18I	GGWCC	3 cut(s)	313, 435, 920
BmeT110I	CYCGRG	1 cut(s)	951
BmgT120I	GGNCC	3 cut(s)	313, 435, 920
BmiI	GGNNCC	2 cut(s)	286, 921
BmrFI	CCNGG	2 cut(s)	94, 540
BmsI	GCATC	2 cut(s)	372, 914
BpiI	GAAGAC	1 cut(s)	934
BpuEI	CTTGAG	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	578
BsaJI	CCNNGG	2 cut(s)	66, 98
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 294, 410, 609
Bse1I	ACTGG	2 cut(s)	79, 1002
Bse3DI	GCAATG	2 cut(s)	673, 751
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	66, 98
BseGI	GGATG	3 cut(s)	499, 586, 905
BseLI	CCNNNNNNNGG	4 cut(s)	99, 294, 410, 609
BseMI	GCAATG	2 cut(s)	673, 751
BseMII	CTCAG	3 cut(s)	558, 562, 792
BseNI	ACTGG	2 cut(s)	79, 1002
BsePI	GCGCGC	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	3 cut(s)	319, 403, 545
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	2 cut(s)	55, 894
BshFI	GGCC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	951
BsiSI	CCGG	3 cut(s)	311, 429, 539
BslI	CCNNNNNNNGG	4 cut(s)	99, 294, 410, 609
BsmAI	GTCTC	1 cut(s)	665
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	951
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	3 cut(s)	559, 561, 793
BspFNI	CGCG	2 cut(s)	55, 894
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	286, 921
BspPI	GGATC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	673, 751
BsrI	ACTGG	2 cut(s)	79, 1002
BssECI	CCNNGG	2 cut(s)	66, 98
BssHII	GCGCGC	1 cut(s)	53
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	2 cut(s)	66, 98
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	4 cut(s)	325, 424, 556, 975
Bst6I	CTCTTC	1 cut(s)	672
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	55, 892
BstDEI	CTNAG	4 cut(s)	548, 567, 801, 1053
BstF5I	GGATG	3 cut(s)	499, 586, 905
BstFNI	CGCG	2 cut(s)	55, 894
BstHHI	GCGC	2 cut(s)	55, 57
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 425
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	92, 538
BstUI	CGCG	2 cut(s)	55, 894
BstV1I	GCAGC	3 cut(s)	319, 403, 545
BstV2I	GAAGAC	1 cut(s)	934
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	3 cut(s)	499, 586, 905
BtsIMutI	CAGTG	2 cut(s)	321, 812
Cac8I	GCNNGC	2 cut(s)	55, 892
CaiI	CAGNNNCTG	2 cut(s)	385, 566
CciI	TCATGA	1 cut(s)	778
CfoI	GCGC	2 cut(s)	55, 57
Cfr13I	GGNCC	3 cut(s)	313, 435, 920
CpoI	CGGWCCG	1 cut(s)	435
Csp6I	GTAC	2 cut(s)	168, 964
CspI	CGGWCCG	1 cut(s)	435
CviAII	CATG	5 cut(s)	85, 278, 722, 779, 947
CviQI	GTAC	2 cut(s)	168, 964
DdeI	CTNAG	4 cut(s)	548, 567, 801, 1053
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
Eco130I	CCWWGG	2 cut(s)	66, 98
Eco147I	AGGCCT	1 cut(s)	97
Eco47I	GGWCC	3 cut(s)	313, 435, 920
Eco57I	CTGAAG	1 cut(s)	696
Eco72I	CACGTG	1 cut(s)	578
Eco88I	CYCGRG	1 cut(s)	951
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	2 cut(s)	66, 98
ErhI	CCWWGG	2 cut(s)	66, 98
FaeI	CATG	5 cut(s)	88, 281, 725, 782, 950
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	5 cut(s)	84, 277, 721, 778, 946
Fnu4HI	GCNGC	3 cut(s)	308, 417, 534
FokI	GGATG	3 cut(s)	506, 573, 892
Fsp4HI	GCNGC	3 cut(s)	308, 417, 534
FspBI	CTAG	1 cut(s)	857
GlaI	GCGC	2 cut(s)	54, 56
GluI	GCNGC	3 cut(s)	308, 417, 534
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	3 cut(s)	311, 429, 539
HhaI	GCGC	2 cut(s)	55, 57
Hin1II	CATG	5 cut(s)	88, 281, 725, 782, 950
Hin6I	GCGC	2 cut(s)	53, 55
HinP1I	GCGC	2 cut(s)	53, 55
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	1 cut(s)	447
HpaII	CCGG	3 cut(s)	311, 429, 539
HphI	GGTGA	1 cut(s)	847
Hpy166II	GTNNAC	2 cut(s)	838, 923
Hpy188I	TCNGA	3 cut(s)	127, 144, 736
Hpy188III	TCNNGA	5 cut(s)	259, 506, 550, 779, 909
Hpy8I	GTNNAC	2 cut(s)	838, 923
HpyAV	CCTTC	2 cut(s)	404, 854
HpyCH4III	ACNGT	4 cut(s)	325, 424, 556, 975
HpyCH4IV	ACGT	3 cut(s)	254, 577, 786
HpyCH4V	TGCA	7 cut(s)	47, 499, 515, 533, 744, 890, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 425
HpyF3I	CTNAG	4 cut(s)	548, 567, 801, 1053
HpySE526I	ACGT	3 cut(s)	254, 577, 786
Hsp92II	CATG	5 cut(s)	88, 281, 725, 782, 950
HspAI	GCGC	2 cut(s)	53, 55
Kzo9I	GATC	1 cut(s)	37
Lsp1109I	GCAGC	3 cut(s)	319, 403, 545
LweI	GCATC	2 cut(s)	372, 914
MaeI	CTAG	1 cut(s)	857
MaeII	ACGT	3 cut(s)	254, 577, 786
MaeIII	GTNAC	3 cut(s)	448, 562, 997
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	3 cut(s)	689, 817, 934
MluCI	AATT	5 cut(s)	192, 217, 356, 592, 692
MlyI	GAGTC	1 cut(s)	456
MmeI	TCCRAC	1 cut(s)	739
MnlI	CCTC	7 cut(s)	231, 326, 562, 603, 640, 643, 910
MseI	TTAA	5 cut(s)	459, 636, 696, 702, 767
MspI	CCGG	3 cut(s)	311, 429, 539
MspR9I	CCNGG	2 cut(s)	94, 540
MvaI	CCWGG	1 cut(s)	94
MvnI	CGCG	2 cut(s)	55, 894
MwoI	GCNNNNNNNGC	2 cut(s)	307, 425
NciI	CCSGG	1 cut(s)	540
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	5 cut(s)	88, 281, 725, 782, 950
NlaIV	GGNNCC	2 cut(s)	286, 921
NmuCI	GTSAC	1 cut(s)	448
PaeR7I	CTCGAG	1 cut(s)	951
PagI	TCATGA	1 cut(s)	778
PauI	GCGCGC	1 cut(s)	53
PceI	AGGCCT	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	309, 418, 535
PleI	GAGTC	1 cut(s)	455
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	455
Ppu21I	YACGTR	1 cut(s)	578
PshBI	ATTAAT	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	92
PspCI	CACGTG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	286, 921
PspPI	GGNCC	3 cut(s)	313, 435, 920
PspXI	VCTCGAGB	1 cut(s)	951
PstNI	CAGNNNCTG	2 cut(s)	385, 566
PteI	GCGCGC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	169, 965
RsaNI	GTAC	2 cut(s)	168, 964
Rsr2I	CGGWCCG	1 cut(s)	435
RsrII	CGGWCCG	1 cut(s)	435
SaqAI	TTAA	5 cut(s)	459, 636, 696, 702, 767
SatI	GCNGC	3 cut(s)	308, 417, 534
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	3 cut(s)	313, 435, 920
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	94, 540
SfaNI	GCATC	2 cut(s)	372, 914
Sfr274I	CTCGAG	1 cut(s)	951
SinI	GGWCC	3 cut(s)	313, 435, 920
SlaI	CTCGAG	1 cut(s)	951
SmlI	CTYRAG	2 cut(s)	504, 951
SmoI	CTYRAG	2 cut(s)	504, 951
Sse9I	AATT	5 cut(s)	192, 217, 356, 592, 692
SseBI	AGGCCT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	857
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	92, 538
StyI	CCWWGG	2 cut(s)	66, 98
TaaI	ACNGT	4 cut(s)	325, 424, 556, 975
TaiI	ACGT	3 cut(s)	257, 580, 789
TaqI	TCGA	2 cut(s)	114, 952
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	5 cut(s)	192, 217, 356, 592, 692
TatI	WGTACW	1 cut(s)	963
Tru1I	TTAA	5 cut(s)	459, 636, 696, 702, 767
Tru9I	TTAA	5 cut(s)	459, 636, 696, 702, 767
TscAI	CASTG	2 cut(s)	328, 819
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	3 cut(s)	307, 416, 533
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	2 cut(s)	73, 738
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	2 cut(s)	328, 819
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	3 cut(s)	313, 435, 920
VspI	ATTAAT	1 cut(s)	702
XapI	RAATTY	5 cut(s)	192, 217, 356, 592, 692
XhoI	CTCGAG	1 cut(s)	951
XspI	CTAG	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.