Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006106

Physical Location & Seq

Genomic Coordinates Forward (+)

16572011 .. 16576910

Gene Structure 4900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG079300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGAGCAAGGTCTTTGTCCAATACAACCACACCGATCCCTGTGCATTTGCGCGCTGGACTACCAAGGAAAGCTTCCAGTTCATGTCAGCCAGGCCTTGGCAACAAGTCATCGACTTTTATTCCGATGTGGTAAAGGGTCAGAAGCCCTTGTCTGCGTTGTTGGGTACTTCTTGTTTGAGCAAAAACAAAATTTACAATAGTATAGAGTGTGTAAATTCTCAGAATAGGGGTGGGAGGTGGGCAAGACTGACGTTCAAGATTGTGGTTTCGTATCATGGGGGTTCCTTTGATGGGTGGCAAAAGCAGCCGGACCTCTACACTGTCCAAAGTGTTGTTGAGCAATCTCTTGGGAAATTTGTTGATGACAAGAAAGCCCAGATGCTGAAAGACAAAGGGTTGCCATTGGAAGGGGCTGCTACTGTCGCTGGACGGACCGATAAAGGAGTTACAGCCCTTAATCAAGTTTGTTCTTTCTATACTTGGAGAAAGGATGTGCAATCTCAAGATATTGCAGAAGCTATAAGTAGTGCAGCACCGGGAAAACTCAGGACAGTATCAGTTACTGAGGTATCACGTGTATTCCATCCAAATTTTTCTGCCAAATGGAGGCGTTATTTGTATATATTTCCATTTAATGATGATGAGGAGGACAGGGAACAAAGCAATGAGACTGGAGAGAATACTCAAAAATTTAAGATTAATGATGATCATTATGAGCATGAAGTTGTATCTGATAAATGCAATGGGGAAAATGTTGGAAACTTAATCATCACTGATGACGTAGAGTTGGAAACTGAGAAGAAGCCACGGATGTTCAGCGTAAGCAGGGTGAACAAACTTTTACAGAAACTAGAAGGAAAGTTATTATCATATAAGCTATTTGCACGCGATACCAAAGCATCCAGAAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

305

Amino Acids

34.82

Weight (kDa)

8.44

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35400 AT5G35400
fragaria_vesca	FvH4_4g06050 FvH4_4g06050
malus_domestica	MD13G1232500.v1.1
prunus_persica	Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1
pyrus_communis	pycom13g20490
rosa_chinensis	RchiOBHm_Chr4g0397611
rosa_laevigata	RLG00000009424
rosa_multiflora	Rmu_sc0002729.1_g000001 Rmu_sc0005653.1_g000002
rosa_roxburghii	Rroxscaffold_5G00342420
rosa_rugosa	Rorug03G0342300 Rorug03G0342400
rosa_samantha	Rh4AG079300 Rh4BG077200 Rh4CG084900 Rh4DG072300
rosa_wichuraiana	Rw4G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccII	CGCG	2 cut(s)	55, 891
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	5 cut(s)	192, 217, 356, 592, 692
AcvI	CACGTG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	4 cut(s)	99, 294, 410, 609
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	3 cut(s)	75, 521, 880
AluI	AGCT	3 cut(s)	75, 521, 880
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	2 cut(s)	385, 566
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	307, 416, 533
ApoI	RAATTY	5 cut(s)	192, 217, 356, 592, 692
AseI	ATTAAT	1 cut(s)	702
AspLEI	GCGC	2 cut(s)	55, 57
AspS9I	GGNCC	2 cut(s)	313, 435
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	844
AvaII	GGWCC	2 cut(s)	313, 435
BaeI	ACNNNNGTAYC	2 cut(s)	555, 588
BbrPI	CACGTG	1 cut(s)	578
BbvI	GCAGC	3 cut(s)	319, 403, 545
BccI	CCATC	2 cut(s)	287, 594
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	94
BclI	TGATCA	1 cut(s)	709
BcnI	CCSGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	1 cut(s)	854
BisI	GCNGC	3 cut(s)	308, 417, 534
BlsI	GCNGC	3 cut(s)	309, 418, 535
Bme1390I	CCNGG	2 cut(s)	94, 540
Bme18I	GGWCC	2 cut(s)	313, 435
BmgT120I	GGNCC	2 cut(s)	313, 435
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	94, 540
BmsI	GCATC	2 cut(s)	372, 911
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	578
BsaJI	CCNNGG	3 cut(s)	66, 98, 809
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 294, 410, 609
Bse1I	ACTGG	2 cut(s)	79, 679
Bse3DI	GCAATG	2 cut(s)	673, 751
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	3 cut(s)	66, 98, 809
BseGI	GGATG	4 cut(s)	499, 586, 819, 902
BseLI	CCNNNNNNNGG	4 cut(s)	99, 294, 410, 609
BseMI	GCAATG	2 cut(s)	673, 751
BseMII	CTCAG	4 cut(s)	236, 558, 562, 789
BseNI	ACTGG	2 cut(s)	79, 679
BsePI	GCGCGC	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	3 cut(s)	319, 403, 545
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	2 cut(s)	55, 891
BshFI	GGCC	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	311, 539
BslI	CCNNNNNNNGG	4 cut(s)	99, 294, 410, 609
BsmAI	GTCTC	1 cut(s)	665
BsnI	GGCC	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	37, 709
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	4 cut(s)	235, 559, 561, 790
BspFNI	CGCG	2 cut(s)	55, 891
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	673, 751
BsrI	ACTGG	2 cut(s)	79, 679
BssECI	CCNNGG	3 cut(s)	66, 98, 809
BssHII	GCGCGC	1 cut(s)	53
BssMI	GATC	2 cut(s)	37, 709
BssT1I	CCWWGG	2 cut(s)	66, 98
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	3 cut(s)	325, 424, 556
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	55, 889
BstDEI	CTNAG	4 cut(s)	222, 548, 567, 798
BstDSI	CCRYGG	1 cut(s)	809
BstF5I	GGATG	4 cut(s)	499, 586, 819, 902
BstFNI	CGCG	2 cut(s)	55, 891
BstHHI	GCGC	2 cut(s)	55, 57
BstKTI	GATC	2 cut(s)	40, 712
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	2 cut(s)	37, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 425
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	92, 538
BstUI	CGCG	2 cut(s)	55, 891
BstV1I	GCAGC	3 cut(s)	319, 403, 545
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	809
BtsCI	GGATG	4 cut(s)	499, 586, 819, 902
BtsIMutI	CAGTG	2 cut(s)	321, 774
Cac8I	GCNNGC	2 cut(s)	55, 889
CaiI	CAGNNNCTG	2 cut(s)	385, 566
CfoI	GCGC	2 cut(s)	55, 57
Cfr13I	GGNCC	2 cut(s)	313, 435
CpoI	CGGWCCG	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	168
CspI	CGGWCCG	1 cut(s)	435
CviAII	CATG	3 cut(s)	85, 278, 722
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	4 cut(s)	222, 548, 567, 798
DpnI	GATC	2 cut(s)	39, 711
DpnII	GATC	2 cut(s)	37, 709
Eco130I	CCWWGG	2 cut(s)	66, 98
Eco147I	AGGCCT	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	313, 435
Eco72I	CACGTG	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	2 cut(s)	66, 98
ErhI	CCWWGG	2 cut(s)	66, 98
FaeI	CATG	3 cut(s)	88, 281, 725
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	3 cut(s)	84, 277, 721
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	308, 417, 534
FokI	GGATG	4 cut(s)	506, 573, 826, 889
Fsp4HI	GCNGC	3 cut(s)	308, 417, 534
FspBI	CTAG	1 cut(s)	854
GlaI	GCGC	2 cut(s)	54, 56
GluI	GCNGC	3 cut(s)	308, 417, 534
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	311, 539
HhaI	GCGC	2 cut(s)	55, 57
Hin1II	CATG	3 cut(s)	88, 281, 725
Hin6I	GCGC	2 cut(s)	53, 55
HinP1I	GCGC	2 cut(s)	53, 55
HindIII	AAGCTT	1 cut(s)	73
HpaII	CCGG	2 cut(s)	311, 539
HphI	GGTGA	1 cut(s)	844
Hpy166II	GTNNAC	1 cut(s)	835
Hpy188I	TCNGA	4 cut(s)	127, 144, 225, 736
Hpy188III	TCNNGA	4 cut(s)	259, 506, 550, 906
Hpy8I	GTNNAC	1 cut(s)	835
HpyAV	CCTTC	2 cut(s)	404, 851
HpyCH4III	ACNGT	3 cut(s)	325, 424, 556
HpyCH4IV	ACGT	3 cut(s)	254, 577, 783
HpyCH4V	TGCA	6 cut(s)	47, 499, 515, 533, 744, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 425
HpyF3I	CTNAG	4 cut(s)	222, 548, 567, 798
HpySE526I	ACGT	3 cut(s)	254, 577, 783
Hsp92II	CATG	3 cut(s)	88, 281, 725
HspAI	GCGC	2 cut(s)	53, 55
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	2 cut(s)	37, 709
Lsp1109I	GCAGC	3 cut(s)	319, 403, 545
LweI	GCATC	2 cut(s)	372, 911
MaeI	CTAG	1 cut(s)	854
MaeII	ACGT	3 cut(s)	254, 577, 783
MaeIII	GTNAC	2 cut(s)	448, 562
MalI	GATC	2 cut(s)	39, 711
MboI	GATC	2 cut(s)	37, 709
MboII	GAAGA	1 cut(s)	814
MluCI	AATT	5 cut(s)	192, 217, 356, 592, 692
MmeI	TCCRAC	2 cut(s)	739, 771
MnlI	CCTC	6 cut(s)	231, 326, 562, 603, 640, 643
MseI	TTAA	5 cut(s)	459, 636, 696, 702, 767
MspI	CCGG	2 cut(s)	311, 539
MspR9I	CCNGG	2 cut(s)	94, 540
MvaI	CCWGG	1 cut(s)	94
MvnI	CGCG	2 cut(s)	55, 891
MwoI	GCNNNNNNNGC	2 cut(s)	307, 425
NciI	CCSGG	1 cut(s)	540
NdeII	GATC	2 cut(s)	37, 709
NlaIII	CATG	3 cut(s)	88, 281, 725
NlaIV	GGNNCC	1 cut(s)	286
PauI	GCGCGC	1 cut(s)	53
PceI	AGGCCT	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	309, 418, 535
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
Ppu21I	YACGTR	1 cut(s)	578
PshBI	ATTAAT	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	92
PspCI	CACGTG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	313, 435
PstNI	CAGNNNCTG	2 cut(s)	385, 566
PteI	GCGCGC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
Rsr2I	CGGWCCG	1 cut(s)	435
RsrII	CGGWCCG	1 cut(s)	435
SaqAI	TTAA	5 cut(s)	459, 636, 696, 702, 767
SatI	GCNGC	3 cut(s)	308, 417, 534
Sau3AI	GATC	2 cut(s)	37, 709
Sau96I	GGNCC	2 cut(s)	313, 435
ScrFI	CCNGG	2 cut(s)	94, 540
SfaNI	GCATC	2 cut(s)	372, 911
SinI	GGWCC	2 cut(s)	313, 435
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	5 cut(s)	192, 217, 356, 592, 692
SseBI	AGGCCT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	854
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	92, 538
StyI	CCWWGG	2 cut(s)	66, 98
TaaI	ACNGT	3 cut(s)	325, 424, 556
TaiI	ACGT	3 cut(s)	257, 580, 786
TaqI	TCGA	1 cut(s)	114
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	5 cut(s)	192, 217, 356, 592, 692
Tru1I	TTAA	5 cut(s)	459, 636, 696, 702, 767
Tru9I	TTAA	5 cut(s)	459, 636, 696, 702, 767
TscAI	CASTG	2 cut(s)	328, 781
TseI	GCWGC	3 cut(s)	307, 416, 533
TspDTI	ATGAA	2 cut(s)	73, 738
TspGWI	ACGGA	2 cut(s)	448, 826
TspRI	CASTG	2 cut(s)	328, 781
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	313, 435
VspI	ATTAAT	1 cut(s)	702
XapI	RAATTY	5 cut(s)	192, 217, 356, 592, 692
XspI	CTAG	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.