Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002729.1

Orthogroup ID

OG0006106

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3681

Gene Structure 3681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002729.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 901 bp

tgttgttgagcaatctcttgggaaatttgttgatgacaagaaagcccagatgctgaaagacaaagggttgccattggaaggggctgctactgtcgccggacggaccgataaaggagtcacagcccttaatcaagtttgttctttctatacttggagaaaggatgtgcaatctcaagatattgcagaagctataagtagtgcagcaccaggaaaactcaggacagtatcagttactgaggtatcacgtgtattccatccaaatttttctgccaaatggaggcgttatttgtatatatttccatttaatgatgatgaggaggacagggaacaaagcaatgagactggagagaatactcaaaaatttaagattaatgataatcattatgagcatgaagttgtatctgaaaaatgcaatggggaaaatgttggaaacttaatcatcactgatgacgtagagtttgaaactgagaagaagccacggatgttcagcgtaagcagggtgaacaaacttttacagaaactagaaggaaagttattatcatataagctatttgcacgcgataccaaagcatccagaaatgagggtccaccaacagagtgttttgtcttccatgctcgagcaagagagtacagattaccgtgttcagagcatgaaaaagggagaagggtcatgtgtatcgaactggttgccaaccgattcctacgcaggatggttcgggttcttgtggcaacctcaattagggaagccactgcaggtgcagatgaggacgcattgctaaaactgatggatgcaacatgcagacgtgctactgcccccccagctccacccgatggtttatgccttgttgatgttggttatgaagaattcgacccgctagattgcctcatctcgaaggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

299

Amino Acids

33.85

Weight (kDa)

6.09

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35400 AT5G35400
fragaria_vesca	FvH4_4g06050 FvH4_4g06050
malus_domestica	MD13G1232500.v1.1
prunus_persica	Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1
pyrus_communis	pycom13g20490
rosa_chinensis	RchiOBHm_Chr4g0397611
rosa_laevigata	RLG00000009424
rosa_multiflora	Rmu_sc0002729.1_g000001 Rmu_sc0005653.1_g000002
rosa_roxburghii	Rroxscaffold_5G00342420
rosa_rugosa	Rorug03G0342300 Rorug03G0342400
rosa_samantha	Rh4AG079300 Rh4BG077200 Rh4CG084900 Rh4DG072300
rosa_wichuraiana	Rw4G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	744
Acc36I	ACCTGC	1 cut(s)	744
AccB7I	CCANNNNNTGG	1 cut(s)	831
AccII	CGCG	1 cut(s)	559
AciI	CCGC	1 cut(s)	873
AcsI	RAATTY	4 cut(s)	24, 260, 360, 864
AcvI	CACGTG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	4 cut(s)	78, 277, 739, 831
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	462
AjiI	CACGTC	1 cut(s)	804
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	3 cut(s)	189, 548, 822
AluI	AGCT	3 cut(s)	189, 548, 822
Alw26I	GTCTC	1 cut(s)	333
AlwNI	CAGNNNCTG	2 cut(s)	53, 234
Ama87I	CYCGRG	1 cut(s)	616
ApeKI	GCWGC	2 cut(s)	84, 201
ApoI	RAATTY	4 cut(s)	24, 260, 360, 864
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
AseI	ATTAAT	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	103, 585
AsuHPI	GGTGA	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	616
AvaII	GGWCC	2 cut(s)	103, 585
BaeI	ACNNNNGTAYC	2 cut(s)	223, 256
BbrPI	CACGTG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	599
BbvI	GCAGC	2 cut(s)	71, 213
BccI	CCATC	4 cut(s)	262, 704, 779, 825
BcgI	CGANNNNNNTGC	2 cut(s)	669, 703
BciT130I	CCWGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	2 cut(s)	522, 876
BfmI	CTRYAG	1 cut(s)	751
BfuAI	ACCTGC	1 cut(s)	744
BisI	GCNGC	2 cut(s)	85, 202
BlsI	GCNGC	2 cut(s)	86, 203
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	2 cut(s)	103, 585
BmeT110I	CYCGRG	1 cut(s)	616
BmgBI	CACGTC	1 cut(s)	804
BmgT120I	GGNCC	2 cut(s)	103, 585
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	3 cut(s)	40, 579, 779
BpiI	GAAGAC	1 cut(s)	599
BpmI	CTGGAG	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	157
BsaAI	YACGTR	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 277, 739, 831
Bse1I	ACTGG	2 cut(s)	347, 688
Bse3DI	GCAATG	3 cut(s)	341, 419, 771
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	6 cut(s)	167, 254, 487, 570, 715, 794
BseLI	CCNNNNNNNGG	4 cut(s)	78, 277, 739, 831
BseMI	GCAATG	3 cut(s)	341, 419, 771
BseMII	CTCAG	3 cut(s)	226, 230, 457
BseNI	ACTGG	2 cut(s)	347, 688
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	71, 213
BseYI	CCCAGC	1 cut(s)	818
BsgI	GTGCAG	2 cut(s)	220, 778
Bsh1236I	CGCG	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	4 cut(s)	78, 277, 739, 831
BsmAI	GTCTC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	616
BspACI	CCGC	1 cut(s)	873
BspCNI	CTCAG	3 cut(s)	227, 229, 458
BspFNI	CGCG	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	586
BspMAI	CTGCAG	1 cut(s)	755
BspMI	ACCTGC	1 cut(s)	744
BsrDI	GCAATG	3 cut(s)	341, 419, 771
BsrI	ACTGG	2 cut(s)	347, 688
BssECI	CCNNGG	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	3 cut(s)	92, 224, 640
BstBAI	YACGTR	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	3 cut(s)	216, 235, 466
BstDSI	CCRYGG	1 cut(s)	477
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstF5I	GGATG	6 cut(s)	167, 254, 487, 570, 715, 794
BstFNI	CGCG	1 cut(s)	559
BstMAI	GTCTC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 819
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	799
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	751
BstUI	CGCG	1 cut(s)	559
BstV1I	GCAGC	2 cut(s)	71, 213
BstV2I	GAAGAC	1 cut(s)	599
BtgI	CCRYGG	1 cut(s)	477
BtrI	CACGTC	1 cut(s)	804
BtsCI	GGATG	6 cut(s)	167, 254, 487, 570, 715, 794
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	442, 748
BveI	ACCTGC	1 cut(s)	744
Cac8I	GCNNGC	1 cut(s)	557
CaiI	CAGNNNCTG	2 cut(s)	53, 234
Cfr13I	GGNCC	2 cut(s)	103, 585
CpoI	CGGWCCG	1 cut(s)	103
CseI	GACGC	1 cut(s)	777
Csp6I	GTAC	1 cut(s)	629
CspI	CGGWCCG	1 cut(s)	103
CviAII	CATG	5 cut(s)	390, 612, 651, 671, 796
CviJI	RGCY	8 cut(s)	45, 84, 123, 189, 476, 548, 747, 822
CviKI_1	RGCY	8 cut(s)	45, 84, 123, 189, 476, 548, 747, 822
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	3 cut(s)	216, 235, 466
Eco47I	GGWCC	2 cut(s)	103, 585
Eco72I	CACGTG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	616
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	864
EcoRII	CCWGG	1 cut(s)	206
FaeI	CATG	5 cut(s)	393, 615, 654, 674, 799
FatI	CATG	5 cut(s)	389, 611, 650, 670, 795
FauI	CCCGC	1 cut(s)	880
Fnu4HI	GCNGC	2 cut(s)	85, 202
FokI	GGATG	6 cut(s)	174, 241, 494, 557, 722, 801
Fsp4HI	GCNGC	2 cut(s)	85, 202
FspBI	CTAG	2 cut(s)	522, 876
GluI	GCNGC	2 cut(s)	85, 202
GsaI	CCCAGC	1 cut(s)	822
GsuI	CTGGAG	1 cut(s)	364
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	1 cut(s)	777
Hin1II	CATG	5 cut(s)	393, 615, 654, 674, 799
HinfI	GANTC	2 cut(s)	115, 697
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	2 cut(s)	503, 588
Hpy188I	TCNGA	2 cut(s)	404, 647
Hpy188III	TCNNGA	4 cut(s)	174, 218, 574, 890
Hpy8I	GTNNAC	2 cut(s)	503, 588
HpyAV	CCTTC	4 cut(s)	72, 519, 658, 887
HpyCH4III	ACNGT	3 cut(s)	92, 224, 640
HpyCH4IV	ACGT	3 cut(s)	245, 451, 803
HpyCH4V	TGCA	9 cut(s)	167, 183, 201, 412, 555, 753, 759, 792, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 819
HpyF3I	CTNAG	3 cut(s)	216, 235, 466
HpySE526I	ACGT	3 cut(s)	245, 451, 803
Hsp92II	CATG	5 cut(s)	393, 615, 654, 674, 799
LmnI	GCTCC	1 cut(s)	827
Lsp1109I	GCAGC	2 cut(s)	71, 213
LweI	GCATC	3 cut(s)	40, 579, 779
MaeI	CTAG	2 cut(s)	522, 876
MaeII	ACGT	3 cut(s)	245, 451, 803
MaeIII	GTNAC	2 cut(s)	116, 230
MboII	GAAGA	3 cut(s)	482, 599, 873
MluCI	AATT	5 cut(s)	24, 260, 360, 736, 864
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	8 cut(s)	230, 271, 308, 311, 575, 743, 758, 894
MseI	TTAA	5 cut(s)	127, 304, 364, 370, 435
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	559
MwoI	GCNNNNNNNGC	2 cut(s)	93, 819
NlaIII	CATG	5 cut(s)	393, 615, 654, 674, 799
NlaIV	GGNNCC	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	799
PaeR7I	CTCGAG	1 cut(s)	616
PaqCI	CACCTGC	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	697
PflMI	CCANNNNNTGG	1 cut(s)	831
PkrI	GCNGC	2 cut(s)	86, 203
PleI	GAGTC	1 cut(s)	123
PmaCI	CACGTG	1 cut(s)	246
PmlI	CACGTG	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	123
Ppu21I	YACGTR	1 cut(s)	246
PshBI	ATTAAT	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	818
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	2 cut(s)	103, 585
PspXI	VCTCGAGB	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	755
PstNI	CAGNNNCTG	2 cut(s)	53, 234
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
Rsr2I	CGGWCCG	1 cut(s)	103
RsrII	CGGWCCG	1 cut(s)	103
SaqAI	TTAA	5 cut(s)	127, 304, 364, 370, 435
SatI	GCNGC	2 cut(s)	85, 202
Sau96I	GGNCC	2 cut(s)	103, 585
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	9 cut(s)	191, 241, 248, 454, 550, 735, 758, 806, 824
SfaNI	GCATC	3 cut(s)	40, 579, 779
SfcI	CTRYAG	1 cut(s)	751
Sfr274I	CTCGAG	1 cut(s)	616
SinI	GGWCC	2 cut(s)	103, 585
SlaI	CTCGAG	1 cut(s)	616
SmlI	CTYRAG	2 cut(s)	172, 616
SmoI	CTYRAG	2 cut(s)	172, 616
Sse9I	AATT	5 cut(s)	24, 260, 360, 736, 864
SsiI	CCGC	1 cut(s)	873
SspMI	CTAG	2 cut(s)	522, 876
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	92, 224, 640
TaiI	ACGT	3 cut(s)	248, 454, 806
TaqI	TCGA	4 cut(s)	617, 679, 868, 891
TaqII	GACCGA	1 cut(s)	120
TasI	AATT	5 cut(s)	24, 260, 360, 736, 864
TatI	WGTACW	1 cut(s)	628
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	5 cut(s)	127, 304, 364, 370, 435
Tru9I	TTAA	5 cut(s)	127, 304, 364, 370, 435
TscAI	CASTG	2 cut(s)	449, 755
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	84, 201
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	406, 667, 874
TspGWI	ACGGA	2 cut(s)	116, 494
TspRI	CASTG	2 cut(s)	449, 755
Van91I	CCANNNNNTGG	1 cut(s)	831
VpaK11BI	GGWCC	2 cut(s)	103, 585
VspI	ATTAAT	1 cut(s)	370
XagI	CCTNNNNNAGG	1 cut(s)	737
XapI	RAATTY	4 cut(s)	24, 260, 360, 864
XceI	RCATGY	1 cut(s)	799
XhoI	CTCGAG	1 cut(s)	616
XspI	CTAG	2 cut(s)	522, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.