Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006106

Physical Location & Seq

Genomic Coordinates Forward (+)

13676591 .. 13681390

Gene Structure 4800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG077200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCAAGTTTTCAAACAAGGGTGGGAACGCCGTGAAGACCACAAACAAACTCAGCAAATTCGCAAACTTCAGAATAAGAACTACAAAGCCGAGATGGAGAGCAAGGTCTTTGTCCAATACAACCACACCGATCCCTGTGCATTTGCGCGCTGGACTACCAAGGAAAGCTTCCAGTTCATGTCAGCCAGGCCTTGGCAACAAGTCATCGACTTTTATTCCGATGTGGTAAAGGGTCAGAAGCCCTTGTCTGCGTTGTTGGGTACTACTTGTTTGAGTAAAAACAGAATTTACAATAGTGTAGAGTGTGTAAATTCTCAAAATAGGGGTGGGAGGTGGGCAAGATTGACGTTCAAGATTGTGGTTTCGTATCATGGTGGTTCCTTTGATGGGTGGCAAAAGCAGCCGGACCTCTACACTGTCCAAAGTGTTGTTGAACAATCTCTTGGGAAATTTGTTGATGAGAGGAAAGCCCAGATGCTGAAAGACAGAGGGTTGCCATTGGAAGGGGCTGCTACTGTCGCAGGACGGACCGATAAAGGAGTGACAGCCCTTAATCAAGTTTGTTCTTTCTATACTTGGAGAAAGGATGTGCAATCTCAAGATATTGCAGATGCTATAAATAGTGCAGCACCAGGAAAACTCAGGACAGTATCAGTTACTGAGGTATCACGTGTATTCCATCCAAATTTTTCTGCCAAATGGAGGTGTTATTTGTATATATTTCCATTTAATGATGATGAGGAGGACAGGGAACAAAGCAATGAGACTGGAGAGAATACTCAAAAATTTAAGATTAATGATAATCATTATGAGCATGAAGTTGTATCTGATAAATGCAATGGGGAAAATGTTGGAAACTTAATCATCACTGATGACGTAGAGTTTGAAACTGAGAAGAAGCCACGGATGTTCAGCGTAAGCAGGGTGAACAAACTTTTACAGAAACTAGAAGGAAAGTTATTATCATATAAGCTATTTGCACGTGATACCAAAGCATCCAGAAATGAGGGTCCACCAACAGAGTGTTTTGTCTTCCATGCTCGAGCAAGAGAGTACAGATTACCGTGTTCAGTATGTATTTGCTATGTTACCAGTCTAGCAGAACTTTTCTCTGTCTCCTCTCTTTATATTTTCCCATCAAATATACATCTCTTAGGTTCACATCTTTTCAGGTTGGAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

394

Amino Acids

45.47

Weight (kDa)

8.76

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35400 AT5G35400
fragaria_vesca	FvH4_4g06050 FvH4_4g06050
malus_domestica	MD13G1232500.v1.1
prunus_persica	Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1 Prupe.1G064000_v2.0.a1
pyrus_communis	pycom13g20490
rosa_chinensis	RchiOBHm_Chr4g0397611
rosa_laevigata	RLG00000009424
rosa_multiflora	Rmu_sc0002729.1_g000001 Rmu_sc0005653.1_g000002
rosa_roxburghii	Rroxscaffold_5G00342420
rosa_rugosa	Rorug03G0342300 Rorug03G0342400
rosa_samantha	Rh4AG079300 Rh4BG077200 Rh4CG084900 Rh4DG072300
rosa_wichuraiana	Rw4G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	192
AccII	CGCG	1 cut(s)	148
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	6 cut(s)	57, 285, 310, 449, 685, 785
AcuI	CTGAAG	1 cut(s)	53
AcvI	CACGTG	2 cut(s)	671, 983
AfaI	GTAC	2 cut(s)	262, 1055
AfiI	CCNNNNNNNGG	4 cut(s)	192, 387, 503, 702
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	4 cut(s)	13, 352, 434, 887
AjnI	CCWGG	2 cut(s)	185, 631
AjuI	GAANNNNNNNTTGG	4 cut(s)	152, 184, 426, 458
AluBI	AGCT	2 cut(s)	168, 973
AluI	AGCT	2 cut(s)	168, 973
Alw26I	GTCTC	2 cut(s)	758, 1120
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	2 cut(s)	478, 659
Ama87I	CYCGRG	1 cut(s)	1041
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	400, 509, 626
ApoI	RAATTY	6 cut(s)	57, 285, 310, 449, 685, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	866, 898
AseI	ATTAAT	1 cut(s)	795
AspLEI	GCGC	2 cut(s)	148, 150
AspS9I	GGNCC	3 cut(s)	406, 528, 1010
AsuHPI	GGTGA	1 cut(s)	937
AvaI	CYCGRG	1 cut(s)	1041
AvaII	GGWCC	3 cut(s)	406, 528, 1010
BaeI	ACNNNNGTAYC	2 cut(s)	648, 681
BbrPI	CACGTG	2 cut(s)	671, 983
BbsI	GAAGAC	2 cut(s)	42, 1024
BbvI	GCAGC	3 cut(s)	412, 496, 638
BccI	CCATC	4 cut(s)	88, 380, 687, 1144
BceAI	ACGGC	1 cut(s)	15
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BciT130I	CCWGG	2 cut(s)	187, 633
BcoDI	GTCTC	2 cut(s)	758, 1120
BfaI	CTAG	2 cut(s)	947, 1097
BisI	GCNGC	3 cut(s)	401, 510, 627
BlsI	GCNGC	3 cut(s)	402, 511, 628
Bme1390I	CCNGG	2 cut(s)	187, 633
Bme18I	GGWCC	3 cut(s)	406, 528, 1010
BmeT110I	CYCGRG	1 cut(s)	1041
BmgT120I	GGNCC	3 cut(s)	406, 528, 1010
BmiI	GGNNCC	2 cut(s)	379, 1011
BmrFI	CCNGG	2 cut(s)	187, 633
BmsI	GCATC	3 cut(s)	465, 601, 1004
BpiI	GAAGAC	2 cut(s)	42, 1024
BpmI	CTGGAG	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	582
BsaAI	YACGTR	2 cut(s)	671, 983
BsaJI	CCNNGG	3 cut(s)	159, 191, 902
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 387, 503, 702
Bse1I	ACTGG	3 cut(s)	172, 772, 1092
Bse3DI	GCAATG	2 cut(s)	766, 844
BseBI	CCWGG	2 cut(s)	187, 633
BseDI	CCNNGG	3 cut(s)	159, 191, 902
BseGI	GGATG	4 cut(s)	592, 679, 912, 995
BseLI	CCNNNNNNNGG	4 cut(s)	192, 387, 503, 702
BseMI	GCAATG	2 cut(s)	766, 844
BseMII	CTCAG	4 cut(s)	65, 651, 655, 882
BseNI	ACTGG	3 cut(s)	172, 772, 1092
BsePI	GCGCGC	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	755, 1108
BseXI	GCAGC	3 cut(s)	412, 496, 638
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	1041
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	4 cut(s)	192, 387, 503, 702
BsmAI	GTCTC	2 cut(s)	758, 1120
BsnI	GGCC	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	1041
Bsp143I	GATC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	4 cut(s)	64, 652, 654, 883
BspFNI	CGCG	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	379, 1011
BspPI	GGATC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	766, 844
BsrI	ACTGG	3 cut(s)	172, 772, 1092
BssECI	CCNNGG	3 cut(s)	159, 191, 902
BssHII	GCGCGC	1 cut(s)	146
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	2 cut(s)	159, 191
Bst2UI	CCWGG	2 cut(s)	187, 633
Bst4CI	ACNGT	4 cut(s)	418, 517, 649, 1065
BstBAI	YACGTR	2 cut(s)	671, 983
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	5 cut(s)	51, 641, 660, 891, 1153
BstDSI	CCRYGG	1 cut(s)	902
BstF5I	GGATG	4 cut(s)	592, 679, 912, 995
BstFNI	CGCG	1 cut(s)	148
BstHHI	GCGC	2 cut(s)	148, 150
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	2 cut(s)	758, 1120
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 518
BstNI	CCWGG	2 cut(s)	187, 633
BstSCI	CCNGG	2 cut(s)	185, 631
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	3 cut(s)	412, 496, 638
BstV2I	GAAGAC	2 cut(s)	42, 1024
BsuRI	GGCC	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	902
BtsCI	GGATG	4 cut(s)	592, 679, 912, 995
BtsIMutI	CAGTG	2 cut(s)	414, 867
Cac8I	GCNNGC	1 cut(s)	148
CaiI	CAGNNNCTG	2 cut(s)	478, 659
CfoI	GCGC	2 cut(s)	148, 150
Cfr13I	GGNCC	3 cut(s)	406, 528, 1010
CpoI	CGGWCCG	1 cut(s)	528
Csp6I	GTAC	2 cut(s)	261, 1054
CspI	CGGWCCG	1 cut(s)	528
CviAII	CATG	4 cut(s)	178, 371, 815, 1037
CviQI	GTAC	2 cut(s)	261, 1054
DdeI	CTNAG	5 cut(s)	51, 641, 660, 891, 1153
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	159, 191
Eco147I	AGGCCT	1 cut(s)	190
Eco47I	GGWCC	3 cut(s)	406, 528, 1010
Eco57I	CTGAAG	1 cut(s)	53
Eco72I	CACGTG	2 cut(s)	671, 983
Eco88I	CYCGRG	1 cut(s)	1041
EcoRII	CCWGG	2 cut(s)	185, 631
EcoT14I	CCWWGG	2 cut(s)	159, 191
ErhI	CCWWGG	2 cut(s)	159, 191
FaeI	CATG	4 cut(s)	181, 374, 818, 1040
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	4 cut(s)	177, 370, 814, 1036
Fnu4HI	GCNGC	3 cut(s)	401, 510, 627
FokI	GGATG	4 cut(s)	599, 666, 919, 982
Fsp4HI	GCNGC	3 cut(s)	401, 510, 627
FspBI	CTAG	2 cut(s)	947, 1097
GlaI	GCGC	2 cut(s)	147, 149
GluI	GCNGC	3 cut(s)	401, 510, 627
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	2 cut(s)	148, 150
Hin1II	CATG	4 cut(s)	181, 374, 818, 1040
Hin6I	GCGC	2 cut(s)	146, 148
HinP1I	GCGC	2 cut(s)	146, 148
HindIII	AAGCTT	1 cut(s)	166
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	937
Hpy166II	GTNNAC	3 cut(s)	928, 1013, 1160
Hpy188I	TCNGA	4 cut(s)	72, 220, 237, 829
Hpy188III	TCNNGA	4 cut(s)	352, 599, 643, 999
Hpy8I	GTNNAC	3 cut(s)	928, 1013, 1160
HpyAV	CCTTC	2 cut(s)	497, 944
HpyCH4III	ACNGT	4 cut(s)	418, 517, 649, 1065
HpyCH4IV	ACGT	4 cut(s)	347, 670, 876, 982
HpyCH4V	TGCA	7 cut(s)	4, 140, 592, 608, 626, 837, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 518
HpyF3I	CTNAG	5 cut(s)	51, 641, 660, 891, 1153
HpySE526I	ACGT	4 cut(s)	347, 670, 876, 982
Hsp92II	CATG	4 cut(s)	181, 374, 818, 1040
HspAI	GCGC	2 cut(s)	146, 148
Kzo9I	GATC	1 cut(s)	130
Lsp1109I	GCAGC	3 cut(s)	412, 496, 638
LweI	GCATC	3 cut(s)	465, 601, 1004
MaeI	CTAG	2 cut(s)	947, 1097
MaeII	ACGT	4 cut(s)	347, 670, 876, 982
MaeIII	GTNAC	3 cut(s)	541, 655, 1087
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	47, 907, 1024
MluCI	AATT	6 cut(s)	57, 285, 310, 449, 685, 785
MmeI	TCCRAC	2 cut(s)	832, 1155
MseI	TTAA	5 cut(s)	552, 729, 789, 795, 860
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	187, 633
MvaI	CCWGG	2 cut(s)	187, 633
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	400, 518
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	4 cut(s)	181, 374, 818, 1040
NlaIV	GGNNCC	2 cut(s)	379, 1011
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	541
PaeR7I	CTCGAG	1 cut(s)	1041
PauI	GCGCGC	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	190
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	3 cut(s)	402, 511, 628
PmaCI	CACGTG	2 cut(s)	671, 983
PmlI	CACGTG	2 cut(s)	671, 983
Ppu21I	YACGTR	2 cut(s)	671, 983
PshBI	ATTAAT	1 cut(s)	795
Psp6I	CCWGG	2 cut(s)	185, 631
PspCI	CACGTG	2 cut(s)	671, 983
PspGI	CCWGG	2 cut(s)	185, 631
PspN4I	GGNNCC	2 cut(s)	379, 1011
PspPI	GGNCC	3 cut(s)	406, 528, 1010
PspXI	VCTCGAGB	1 cut(s)	1041
PstNI	CAGNNNCTG	2 cut(s)	478, 659
PteI	GCGCGC	1 cut(s)	146
RsaI	GTAC	2 cut(s)	262, 1055
RsaNI	GTAC	2 cut(s)	261, 1054
Rsr2I	CGGWCCG	1 cut(s)	528
RsrII	CGGWCCG	1 cut(s)	528
SaqAI	TTAA	5 cut(s)	552, 729, 789, 795, 860
SatI	GCNGC	3 cut(s)	401, 510, 627
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	3 cut(s)	406, 528, 1010
ScrFI	CCNGG	2 cut(s)	187, 633
SfaNI	GCATC	3 cut(s)	465, 601, 1004
Sfr274I	CTCGAG	1 cut(s)	1041
SinI	GGWCC	3 cut(s)	406, 528, 1010
SlaI	CTCGAG	1 cut(s)	1041
SmlI	CTYRAG	2 cut(s)	597, 1041
SmoI	CTYRAG	2 cut(s)	597, 1041
Sse9I	AATT	6 cut(s)	57, 285, 310, 449, 685, 785
SseBI	AGGCCT	1 cut(s)	190
SspMI	CTAG	2 cut(s)	947, 1097
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	2 cut(s)	185, 631
StyI	CCWWGG	2 cut(s)	159, 191
TaaI	ACNGT	4 cut(s)	418, 517, 649, 1065
TaiI	ACGT	4 cut(s)	350, 673, 879, 985
TaqI	TCGA	2 cut(s)	207, 1042
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	6 cut(s)	57, 285, 310, 449, 685, 785
TatI	WGTACW	1 cut(s)	1053
Tru1I	TTAA	5 cut(s)	552, 729, 789, 795, 860
Tru9I	TTAA	5 cut(s)	552, 729, 789, 795, 860
TscAI	CASTG	2 cut(s)	421, 874
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	3 cut(s)	400, 509, 626
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	2 cut(s)	166, 831
TspGWI	ACGGA	2 cut(s)	541, 919
TspRI	CASTG	2 cut(s)	421, 874
Van91I	CCANNNNNTGG	1 cut(s)	192
VpaK11BI	GGWCC	3 cut(s)	406, 528, 1010
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	6 cut(s)	57, 285, 310, 449, 685, 785
XhoI	CTCGAG	1 cut(s)	1041
XspI	CTAG	2 cut(s)	947, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.