Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006405

Physical Location & Seq

Genomic Coordinates Forward (+)

7371881 .. 7375609

Gene Structure 3729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGACAAAGCTTTAAAAAGCAAGGCTTGCATACTTGGTGATCAGAATACCAGTGACGTAGTCATCTGCTTGAAGGATAGAGAAGGACGATACCAACAGTTTTACTCCCACTCATCTGTTCTCATAAAAAGGAGCAAGTACTTTGCTAAACGGTTGTCTAATCCAAACCCTAGTAATTCCATCTATGTTCATTGCTCTGAGGTCAACTTTGATCACCACGTCAACCTGTTGAGGCTGCTCTATCTTCCAACAGAGTTAATTGTAGACGCATTGGATTCTGTTAAGTCGGCTGTTGGTATTCTTCAGTCAGCAGTGAACTTCAAGTGCGACGAGATTGTGTACTGCTGCATCCAGTACTTGGAGGCTGTGCCTTGGGAGAACAAAGAAGAAGAACACATATTAAGAGCAGTATCAAAGTTGGGTCCGGTAGCTATGCCCATAATAGCTAGGATCCAACCTGTTGATTTAGCTGCCACCAAAACTGTTTTCATCTCAGCAATTCGTATTGCGACATCCATTGTTGGCCCATGTCCTCCATTCGGCAATGAGCTTAAAACTTCTGCTCAAGAGCAAGTCGAGTACATGTTAGGAGAAGATGAGGATACACCATTGGTCAAAGCTGACGATGACGTCAGATCTGTGGCAAGATTGGGTCTGTCGCATATTTGTTCAACATTTGAAAAAGAATTGTCGTCCTTGCTTTTGGAGCCAGACCTTGCATCTGAGACAGCAGATGAGAAAATAATGCATAGTTTATCTGATCTCGAGTGGATGTGTAGCATACTTGGCAAGATGGATTTGATGAAAGATTTTGTTTCCAACTGGGCCGAAAGCTCCAATAATGTTTTAGGAGTGATGGAGGACAAGAAACTTGATTCGTTTATGTGGGGCTTGAAGATTAAGCTCATAGAAGTCACTGCTAAAGTCTTGGAATCAGTTGGCTATGGTAGCGTGATTCTTCCGGCTCCAATTCGCTTGACATTACTGAAGTCATGGCTCCCTTATATTAGGAAGATGAAGCCGCTCTTGGATGCAAAGAGCAGTGAGGACACTAGTTTTCCATACAAGATGAACGAAGACTTGTGCCAGACCATTGAAGGAGCCATTGTCACCTTAGTACTGGCGTTACCGTCAAATGATCAAGCCGACATTCTAGCGGACTGGATGAGAGCCGAGCAGGTCCGTTATCCGGACTTGAGCGAGGCTTTCGAGGTCTGGTGTTTCAGAACAAAGTCTGCAAAGAGAAGATTAGTTGAGGCATTGGGTGGGACTGGTAATGCCACACCTACCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

432

Amino Acids

48.17

Weight (kDa)

5.24

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	16 - 121	1.8e-06	BTB/POZ domain
BTB-POZ_ANK-like	PF25553	241 - 409	1.3e-08	BTB/POZ Ankyrin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_5g11380 FvH4_5g11380
malus_domestica	MD06G1114200.v1.1 MD14G1135500.v1.1
prunus_persica	Prupe.5G127000_v2.0.a1 Prupe.5G127000_v2.0.a1
pyrus_communis	pycom06g10680 pycom14g10870
rosa_chinensis	RchiOBHm_Chr7g0186491
rosa_laevigata	RLG00000004841
rosa_multiflora	Rmu_co8455067.1_g000001 Rmu_sc0000645.1_g000031
rosa_roxburghii	Rroxscaffold_3G00268100 Rroxscaffold_4G00302490
rosa_rugosa	Rorug06G0474700
rosa_samantha	Rh6CG051800 Rh7AG066600 Rh7BG082400 Rh7CG081200 Rh7DG082000
rosa_wichuraiana	Rw7G006820 Rw7G007060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	629
AatII	GACGTC	1 cut(s)	633
Acc36I	ACCTGC	1 cut(s)	1168
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccBSI	CCGCTC	1 cut(s)	1024
AccI	GTMKAC	1 cut(s)	264
AccIII	TCCGGA	1 cut(s)	1189
AciI	CCGC	2 cut(s)	1022, 1157
AclWI	GGATC	2 cut(s)	445, 458
AcuI	CTGAAG	2 cut(s)	287, 1007
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	5 cut(s)	140, 341, 356, 581, 1119
AfiI	CCNNNNNNNGG	3 cut(s)	358, 539, 1189
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	6 cut(s)	73, 322, 672, 680, 895, 1097
AhlI	ACTAGT	1 cut(s)	1052
AjiI	CACGTC	1 cut(s)	220
AjuI	GAANNNNNNNTTGG	4 cut(s)	470, 502, 1010, 1042
AluBI	AGCT	8 cut(s)	11, 431, 446, 470, 550, 620, 834, 904
AluI	AGCT	8 cut(s)	11, 431, 446, 470, 550, 620, 834, 904
Alw26I	GTCTC	1 cut(s)	719
AlwI	GGATC	2 cut(s)	445, 458
Ama87I	CYCGRG	1 cut(s)	764
Aor13HI	TCCGGA	1 cut(s)	1189
AoxI	GGCC	2 cut(s)	523, 825
ApeKI	GCWGC	3 cut(s)	235, 345, 470
AspS9I	GGNCC	4 cut(s)	422, 524, 825, 1180
AsuHPI	GGTGA	3 cut(s)	50, 206, 1102
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	2 cut(s)	422, 1180
BamHI	GGATCC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	1083
BbvI	GCAGC	3 cut(s)	222, 332, 457
BccI	CCATC	3 cut(s)	188, 787, 850
BciVI	GTATCC	1 cut(s)	595
BclI	TGATCA	3 cut(s)	40, 211, 1138
BcoDI	GTCTC	1 cut(s)	719
BcuI	ACTAGT	1 cut(s)	1052
BfaI	CTAG	4 cut(s)	171, 447, 1053, 1154
BfuAI	ACCTGC	1 cut(s)	1168
BfuI	GTATCC	1 cut(s)	595
BglII	AGATCT	1 cut(s)	635
BisI	GCNGC	4 cut(s)	236, 346, 471, 1022
BlsI	GCNGC	4 cut(s)	237, 347, 472, 1023
BmcAI	AGTACT	3 cut(s)	140, 356, 1119
Bme18I	GGWCC	2 cut(s)	422, 1180
BmeT110I	CYCGRG	1 cut(s)	764
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	4 cut(s)	422, 524, 825, 1180
BmiI	GGNNCC	6 cut(s)	423, 452, 708, 966, 998, 1102
BmrI	ACTGGG	1 cut(s)	832
BmsI	GCATC	3 cut(s)	357, 728, 1021
BmuI	ACTGGG	1 cut(s)	832
BpiI	GAAGAC	1 cut(s)	1083
BpuEI	CTTGAG	2 cut(s)	549, 1216
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	1 cut(s)	371
BsaWI	WCCGGW	2 cut(s)	424, 1189
BsaXI	ACNNNNNCTCC	2 cut(s)	1092, 1122
Bsc4I	CCNNNNNNNGG	3 cut(s)	358, 539, 1189
Bse1I	ACTGG	6 cut(s)	51, 352, 827, 1125, 1166, 1276
Bse3DI	GCAATG	2 cut(s)	190, 550
BseAI	TCCGGA	1 cut(s)	1189
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	5 cut(s)	348, 512, 777, 1036, 1170
BseLI	CCNNNNNNNGG	3 cut(s)	358, 539, 1189
BseMI	GCAATG	2 cut(s)	190, 550
BseMII	CTCAG	3 cut(s)	189, 507, 714
BseNI	ACTGG	6 cut(s)	51, 352, 827, 1125, 1166, 1276
BseXI	GCAGC	3 cut(s)	222, 332, 457
BshFI	GGCC	2 cut(s)	525, 827
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	3 cut(s)	425, 962, 1190
BslFI	GGGAC	1 cut(s)	1282
BslI	CCNNNNNNNGG	3 cut(s)	358, 539, 1189
BsmAI	GTCTC	1 cut(s)	719
BsmFI	GGGAC	1 cut(s)	1282
BsnI	GGCC	2 cut(s)	525, 827
BsoBI	CYCGRG	1 cut(s)	764
Bsp13I	TCCGGA	1 cut(s)	1189
Bsp143I	GATC	6 cut(s)	40, 211, 450, 635, 760, 1138
BspACI	CCGC	2 cut(s)	1022, 1157
BspANI	GGCC	2 cut(s)	525, 827
BspCNI	CTCAG	3 cut(s)	190, 506, 715
BspEI	TCCGGA	1 cut(s)	1189
BspLI	GGNNCC	6 cut(s)	423, 452, 708, 966, 998, 1102
BspMI	ACCTGC	1 cut(s)	1168
BspPI	GGATC	2 cut(s)	445, 458
BsrBI	CCGCTC	1 cut(s)	1024
BsrDI	GCAATG	2 cut(s)	190, 550
BsrI	ACTGG	6 cut(s)	51, 352, 827, 1125, 1166, 1276
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	6 cut(s)	40, 211, 450, 635, 760, 1138
BssNI	GRCGYC	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	371
Bst4CI	ACNGT	4 cut(s)	99, 153, 484, 1131
BstACI	GRCGYC	1 cut(s)	630
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	4 cut(s)	198, 493, 723, 1114
BstF5I	GGATG	5 cut(s)	348, 512, 777, 1036, 1170
BstKTI	GATC	6 cut(s)	43, 214, 453, 638, 763, 1141
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	6 cut(s)	40, 211, 450, 635, 760, 1138
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 706, 786, 948
BstNSI	RCATGY	1 cut(s)	586
BstV1I	GCAGC	3 cut(s)	222, 332, 457
BstV2I	GAAGAC	1 cut(s)	1083
BstX2I	RGATCY	2 cut(s)	450, 635
BstYI	RGATCY	2 cut(s)	450, 635
BsuI	GTATCC	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	525, 827
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	5 cut(s)	348, 512, 777, 1036, 1170
BtsI	GCAGTG	3 cut(s)	318, 915, 1048
BtsIMutI	CAGTG	4 cut(s)	58, 318, 915, 1048
BveI	ACCTGC	1 cut(s)	1168
Cac8I	GCNNGC	1 cut(s)	28
Cfr13I	GGNCC	4 cut(s)	422, 524, 825, 1180
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	5 cut(s)	139, 340, 355, 580, 1118
CviAII	CATG	3 cut(s)	528, 583, 993
CviQI	GTAC	5 cut(s)	139, 340, 355, 580, 1118
DdeI	CTNAG	4 cut(s)	198, 493, 723, 1114
DpnI	GATC	6 cut(s)	42, 213, 452, 637, 762, 1140
DpnII	GATC	6 cut(s)	40, 211, 450, 635, 760, 1138
DraI	TTTAAA	1 cut(s)	15
DrdI	GACNNNNNNGTC	1 cut(s)	629
DseDI	GACNNNNNNGTC	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	422, 1180
Eco57I	CTGAAG	2 cut(s)	287, 1007
Eco88I	CYCGRG	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	371
EcoT22I	ATGCAT	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	3 cut(s)	531, 586, 996
FalI	AAGNNNNNCTT	4 cut(s)	10, 42, 1010, 1042
FaqI	GGGAC	1 cut(s)	1282
FatI	CATG	3 cut(s)	527, 582, 992
FbaI	TGATCA	3 cut(s)	40, 211, 1138
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	4 cut(s)	236, 346, 471, 1022
FokI	GGATG	5 cut(s)	335, 499, 784, 1043, 1177
Fsp4HI	GCNGC	4 cut(s)	236, 346, 471, 1022
FspBI	CTAG	4 cut(s)	171, 447, 1053, 1154
GluI	GCNGC	4 cut(s)	236, 346, 471, 1022
HaeIII	GGCC	2 cut(s)	525, 827
HapII	CCGG	3 cut(s)	425, 962, 1190
HgaI	GACGC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	3 cut(s)	531, 586, 996
HincII	GTYRAC	2 cut(s)	205, 223
HindII	GTYRAC	2 cut(s)	205, 223
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	4 cut(s)	275, 875, 932, 955
HpaII	CCGG	3 cut(s)	425, 962, 1190
HphI	GGTGA	3 cut(s)	50, 206, 1102
Hpy166II	GTNNAC	5 cut(s)	205, 223, 265, 316, 340
Hpy188I	TCNGA	6 cut(s)	45, 199, 635, 724, 760, 1226
Hpy188III	TCNNGA	3 cut(s)	566, 764, 1190
Hpy8I	GTNNAC	5 cut(s)	205, 223, 265, 316, 340
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	3 cut(s)	67, 77, 1091
HpyCH4III	ACNGT	4 cut(s)	99, 153, 484, 1131
HpyCH4IV	ACGT	3 cut(s)	57, 219, 630
HpyCH4V	TGCA	6 cut(s)	30, 348, 719, 748, 1034, 1238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 706, 786, 948
HpyF3I	CTNAG	4 cut(s)	198, 493, 723, 1114
HpySE526I	ACGT	3 cut(s)	57, 219, 630
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	3 cut(s)	531, 586, 996
Kpn2I	TCCGGA	1 cut(s)	1189
Ksp22I	TGATCA	3 cut(s)	40, 211, 1138
Kzo9I	GATC	6 cut(s)	40, 211, 450, 635, 760, 1138
LmnI	GCTCC	6 cut(s)	132, 706, 839, 970, 1002, 1100
Lsp1109I	GCAGC	3 cut(s)	222, 332, 457
LweI	GCATC	3 cut(s)	357, 728, 1021
MaeI	CTAG	4 cut(s)	171, 447, 1053, 1154
MaeII	ACGT	3 cut(s)	57, 219, 630
MaeIII	GTNAC	4 cut(s)	53, 913, 1108, 1125
MalI	GATC	6 cut(s)	42, 213, 452, 637, 762, 1140
MbiI	CCGCTC	1 cut(s)	1024
MboI	GATC	6 cut(s)	40, 211, 450, 635, 760, 1138
MflI	RGATCY	2 cut(s)	450, 635
MluCI	AATT	5 cut(s)	175, 258, 498, 686, 969
MmeI	TCCRAC	3 cut(s)	272, 478, 843
Mph1103I	ATGCAT	1 cut(s)	750
MroI	TCCGGA	1 cut(s)	1189
MseI	TTAA	6 cut(s)	14, 257, 282, 401, 552, 900
MspI	CCGG	3 cut(s)	425, 962, 1190
MwoI	GCNNNNNNNGC	4 cut(s)	27, 706, 786, 948
NdeII	GATC	6 cut(s)	40, 211, 450, 635, 760, 1138
NlaIII	CATG	3 cut(s)	531, 586, 996
NlaIV	GGNNCC	6 cut(s)	423, 452, 708, 966, 998, 1102
NmeAIII	GCCGAG	1 cut(s)	1198
NmuCI	GTSAC	3 cut(s)	53, 913, 1108
NsiI	ATGCAT	1 cut(s)	750
NspI	RCATGY	1 cut(s)	586
PaeR7I	CTCGAG	1 cut(s)	764
PciI	ACATGT	1 cut(s)	582
PfeI	GAWTC	4 cut(s)	275, 875, 932, 955
PflFI	GACNNNGTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	237, 347, 472, 1023
PscI	ACATGT	1 cut(s)	582
PspN4I	GGNNCC	6 cut(s)	423, 452, 708, 966, 998, 1102
PspPI	GGNCC	4 cut(s)	422, 524, 825, 1180
PsuI	RGATCY	2 cut(s)	450, 635
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	5 cut(s)	140, 341, 356, 581, 1119
RsaNI	GTAC	5 cut(s)	139, 340, 355, 580, 1118
SaqAI	TTAA	6 cut(s)	14, 257, 282, 401, 552, 900
SatI	GCNGC	4 cut(s)	236, 346, 471, 1022
Sau3AI	GATC	6 cut(s)	40, 211, 450, 635, 760, 1138
Sau96I	GGNCC	4 cut(s)	422, 524, 825, 1180
ScaI	AGTACT	3 cut(s)	140, 356, 1119
SfaNI	GCATC	3 cut(s)	357, 728, 1021
Sfr274I	CTCGAG	1 cut(s)	764
SinI	GGWCC	2 cut(s)	422, 1180
SlaI	CTCGAG	1 cut(s)	764
SmlI	CTYRAG	3 cut(s)	564, 764, 1195
SmoI	CTYRAG	3 cut(s)	564, 764, 1195
SpeI	ACTAGT	1 cut(s)	1052
Sse9I	AATT	5 cut(s)	175, 258, 498, 686, 969
SsiI	CCGC	2 cut(s)	1022, 1157
SspMI	CTAG	4 cut(s)	171, 447, 1053, 1154
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	4 cut(s)	99, 153, 484, 1131
TaiI	ACGT	3 cut(s)	60, 222, 633
TaqI	TCGA	3 cut(s)	576, 765, 1209
TasI	AATT	5 cut(s)	175, 258, 498, 686, 969
TatI	WGTACW	5 cut(s)	138, 339, 354, 579, 1117
TauI	GCSGC	1 cut(s)	1024
TfiI	GAWTC	4 cut(s)	275, 875, 932, 955
Tru1I	TTAA	6 cut(s)	14, 257, 282, 401, 552, 900
Tru9I	TTAA	6 cut(s)	14, 257, 282, 401, 552, 900
TscAI	CASTG	4 cut(s)	58, 318, 922, 1048
TseFI	GTSAC	3 cut(s)	53, 913, 1108
TseI	GCWGC	3 cut(s)	235, 345, 470
Tsp45I	GTSAC	3 cut(s)	53, 913, 1108
TspDTI	ATGAA	5 cut(s)	179, 478, 818, 1031, 1085
TspGWI	ACGGA	1 cut(s)	1172
TspRI	CASTG	4 cut(s)	58, 318, 922, 1048
Tth111I	GACNNNGTC	1 cut(s)	59
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	422, 1180
XceI	RCATGY	1 cut(s)	586
XhoI	CTCGAG	1 cut(s)	764
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	4 cut(s)	171, 447, 1053, 1154
ZraI	GACGTC	1 cut(s)	631
ZrmI	AGTACT	3 cut(s)	140, 356, 1119
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.