Rh6CG051800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006405
Physical Location & Seq
Forward (+)
5283498 .. 5283782
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG051800.1

Sequence Viewer

Length: 285 bp
ATGGATTCCCTTGCTTCTCCCACATATCGACAGCGACGACATCGTCTCGGCCATCGAAGGAAACTCCAACCCGGCGACGATCCCGGCGAAATCTTGCCTCTCTCCAGCGTCGCCGAACTAGAACTCCGATATGGAACGTCGAACTCGACGAGACCCGGTCGATCCGGTGTGCTGTCAAAGCCATCCAAGACGAAAACTCATACCTTCACCGGCGACAACGACTTCTCCCCTGACTCATTGACCGCCCGAGCTGCATGTCGATCGCTTTTAGGAAGCTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.36

Weight (kDa)

10.26

Isoelectric Point (pI)

64.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 42
AciI CCGC 1 cut(s) 243
AclWI GGATC 2 cut(s) 74, 156
AcoI YGGCCR 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 108, 140
AluBI AGCT 2 cut(s) 251, 276
AluI AGCT 2 cut(s) 251, 276
Alw26I GTCTC 2 cut(s) 50, 145
AlwI GGATC 2 cut(s) 74, 156
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 251
AsuC2I CCSGG 3 cut(s) 72, 84, 156
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 246
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 60, 190
BcgI CGANNNNNNTGC 2 cut(s) 243, 277
BcnI CCSGG 3 cut(s) 72, 84, 156
BcoDI GTCTC 2 cut(s) 50, 145
BfaI CTAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 3 cut(s) 72, 84, 156
BmeT110I CYCGRG 1 cut(s) 246
BmrFI CCNGG 3 cut(s) 72, 84, 156
BpmI CTGGAG 1 cut(s) 88
BpuMI CCSGG 3 cut(s) 72, 84, 156
BsaI GGTCTC 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 209, 239
Bse118I RCCGGY 1 cut(s) 209
BseGI GGATG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 238
Bsh1285I CGRYCG 2 cut(s) 160, 263
BshFI GGCC 1 cut(s) 51
BsiEI CGRYCG 2 cut(s) 160, 263
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 5 cut(s) 72, 84, 156, 165, 210
BsmAI GTCTC 2 cut(s) 50, 145
BsmBI CGTCTC 1 cut(s) 50
BsnI GGCC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 246
Bsp143I GATC 3 cut(s) 79, 161, 260
BspACI CCGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 51
BspPI GGATC 2 cut(s) 74, 156
BspTNI GGTCTC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssMI GATC 3 cut(s) 79, 161, 260
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 3 cut(s) 82, 164, 263
BstMAI GTCTC 2 cut(s) 50, 145
BstMBI GATC 3 cut(s) 79, 161, 260
BstMCI CGRYCG 2 cut(s) 160, 263
BstMWI GCNNNNNNNGC 2 cut(s) 178, 251
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 3 cut(s) 70, 82, 154
BstV1I GCAGC 1 cut(s) 238
BsuRI GGCC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 209
CseI GACGC 1 cut(s) 97
CviAII CATG 1 cut(s) 255
CviJI RGCY 4 cut(s) 51, 181, 251, 276
CviKI_1 RGCY 4 cut(s) 51, 181, 251, 276
DpnI GATC 3 cut(s) 81, 163, 262
DpnII GATC 3 cut(s) 79, 161, 260
DrdI GACNNNNNNGTC 1 cut(s) 42
DseDI GACNNNNNNGTC 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 1 cut(s) 258
FaiI YATR 4 cut(s) 25, 132, 201, 256
FatI CATG 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 1 cut(s) 51
HapII CCGG 5 cut(s) 72, 84, 156, 165, 210
HgaI GACGC 1 cut(s) 97
Hin1II CATG 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 2 cut(s) 5, 233
HpaII CCGG 5 cut(s) 72, 84, 156, 165, 210
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 128
Hpy99I CGWCG 5 cut(s) 39, 80, 113, 142, 151
HpyAV CCTTC 2 cut(s) 51, 214
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 251
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 1 cut(s) 258
Kzo9I GATC 3 cut(s) 79, 161, 260
LpnPI CCDG 7 cut(s) 85, 97, 118, 169, 178, 223, 243
Lsp1109I GCAGC 1 cut(s) 238
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 137
MalI GATC 3 cut(s) 81, 163, 262
MboI GATC 3 cut(s) 79, 161, 260
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 1 cut(s) 108
MspI CCGG 5 cut(s) 72, 84, 156, 165, 210
MspR9I CCNGG 3 cut(s) 72, 84, 156
MwoI GCNNNNNNNGC 2 cut(s) 178, 251
NciI CCSGG 3 cut(s) 72, 84, 156
NdeII GATC 3 cut(s) 79, 161, 260
NlaIII CATG 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 27
NspI RCATGY 1 cut(s) 258
PcsI WCGNNNNNNNCGW 4 cut(s) 34, 84, 143, 146
PfeI GAWTC 1 cut(s) 5
PflFI GACNNNGTC 2 cut(s) 42, 156
PkrI GCNGC 1 cut(s) 253
Ple19I CGATCG 1 cut(s) 263
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PsyI GACNNNGTC 2 cut(s) 42, 156
PvuI CGATCG 1 cut(s) 263
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 3 cut(s) 79, 161, 260
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 3 cut(s) 72, 84, 156
SetI ASST 4 cut(s) 140, 206, 253, 278
SgrAI CRCCGGYG 1 cut(s) 209
SsiI CCGC 1 cut(s) 243
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 3 cut(s) 70, 82, 154
TaiI ACGT 1 cut(s) 140
TaqI TCGA 6 cut(s) 28, 55, 140, 146, 160, 259
TfiI GAWTC 1 cut(s) 5
TseI GCWGC 1 cut(s) 251
Tth111I GACNNNGTC 2 cut(s) 42, 156
XceI RCATGY 1 cut(s) 258
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.