Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006405

Physical Location & Seq

Genomic Coordinates Reverse (-)

12414795 .. 12417538

Gene Structure 2744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G127000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGACACAGCTTTACAGACCAAGCCTTGTAGATTTGGTGATAAGAATACTAGTGACATTGTTATATGCTTGAAGAATAGAGAAGGGATACCGAAACGGTTCTACAGCCATTCTTCTGTTCTCATAAATAAGAGCAAGTACTTTGCCAATAGGCTTTCTCATCCAGGCTCTAATCATTGCATTGATATTTATTGCTCAGAGGTTAACTATGATCACCATGTCAACCTGTTGAGGCTTCTGTATCTTCCAACAGACTCAATTTTGGACTCATTCGACTCTGTGAAATCTGCCGTTGGTATTCTTCAGTTAGCCGTTGTTTTCCAGTGTGAAGAGATTGCATGCTGCTGCATCCAGTACTTGGAGGCTGTTCCTTGGGAGGACAAAGAAGAGGAACTTATCCTAAAAGCAGTTTCCAAATTGGGTCCAAAAGCTATGCCAATATTAGCTAGGATCCAACCTGTTGATTTAGCTGCCACCAAAGATGTTTTTGTCTCAGCAGTTCGCATCGCCACATCCATTGCGGGACCATGTCCTCCATTTGGCAACGAGCTTAAAACGTCTGCTCAGGAACAAGTTGAATTCATGTTAGGAGAAGACGAGGATGCACCGTTGGTCACAGCCGATGAGGAAGTAAAATCAGTGTTGAGAATGGGCCTATCCCAGATTTATTCATCATTTGAAAAGGAATTGTCTTCCCTGCTTTTGGAGCCTGACCTTGTGTCCGAGAGAGCAGAGGAGAAAATATTGCACAGCTTATCTGACCTTGAATGGATGTGTAACATACTTGGGAAGATGGATTTAATGAAGGATTTTGTCTCCAACTGGGCTGAAAGCTCCAGTAATGTTTTAGGGGTAGTTGAGAATAATAAACTTGATTCTTTTATGTGGGGTTTGAAAATAAAGCTCATAGAAATTACTGCTAAAGTCCTGGAAGCAGTTGGCTATGGCAATGTGATTCTTCCAACTCCAATCCGGTTGACATTACTAAAGACATGGCTTCCTTACATAAGGAAGATGAAGCCCCTTCTGGATTCAAAGGGCAGTGAGGAGACAGGTTTTCCATACAAGATGAGTGAAGACTTGTGCCAGAGCATAGAAGGGGCCATGGTGACCTTGGTACTGGCATTGCCGTCGAACGATCAAGCAGACATTCTGGCAGACTGGATGGGAGCCGAGCAGGTTCGGTATCCCGACTTGAGTGAGGCCTTTGAGGTCTGGTGTTTCAGAACAAAGTCTGCAAAGAGAAGATTAGTGGAGGGCTTGGATGGGGCTGGCAATGCCACTGTTAGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

432

Amino Acids

48.04

Weight (kDa)

4.94

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_5g11380 FvH4_5g11380
malus_domestica	MD06G1114200.v1.1 MD14G1135500.v1.1
prunus_persica	Prupe.5G127000_v2.0.a1 Prupe.5G127000_v2.0.a1
pyrus_communis	pycom06g10680 pycom14g10870
rosa_chinensis	RchiOBHm_Chr7g0186491
rosa_laevigata	RLG00000004841
rosa_multiflora	Rmu_co8455067.1_g000001 Rmu_sc0000645.1_g000031
rosa_roxburghii	Rroxscaffold_3G00268100 Rroxscaffold_4G00302490
rosa_rugosa	Rorug06G0474700
rosa_samantha	Rh6CG051800 Rh7AG066600 Rh7BG082400 Rh7CG081200 Rh7DG082000
rosa_wichuraiana	Rw7G006820 Rw7G007060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1168
AccB7I	CCANNNNNTGG	1 cut(s)	358
AciI	CCGC	1 cut(s)	521
AclWI	GGATC	2 cut(s)	445, 458
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	3 cut(s)	140, 356, 1119
AfiI	CCNNNNNNNGG	3 cut(s)	358, 539, 703
AgsI	TTSAA	6 cut(s)	73, 578, 680, 767, 895, 1035
AhdI	GACNNNNNGTC	1 cut(s)	718
AhlI	ACTAGT	1 cut(s)	50
AjnI	CCWGG	2 cut(s)	163, 927
AluBI	AGCT	8 cut(s)	11, 431, 446, 470, 550, 753, 834, 904
AluI	AGCT	8 cut(s)	11, 431, 446, 470, 550, 753, 834, 904
Alw26I	GTCTC	3 cut(s)	496, 820, 1043
AlwI	GGATC	2 cut(s)	445, 458
AoxI	GGCC	3 cut(s)	652, 1101, 1203
ApeKI	GCWGC	3 cut(s)	342, 345, 470
ApoI	RAATTY	1 cut(s)	578
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	4 cut(s)	422, 524, 652, 1101
AsuHPI	GGTGA	3 cut(s)	50, 206, 1120
AvaII	GGWCC	2 cut(s)	422, 524
BamHI	GGATCC	1 cut(s)	450
BbsI	GAAGAC	3 cut(s)	600, 684, 1083
BbvI	GCAGC	3 cut(s)	329, 332, 457
BccI	CCATC	3 cut(s)	787, 1159, 1259
BceAI	ACGGC	3 cut(s)	275, 296, 1114
BcgI	CGANNNNNNTGC	2 cut(s)	1113, 1147
BciT130I	CCWGG	2 cut(s)	165, 929
BciVI	GTATCC	2 cut(s)	81, 1197
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	3 cut(s)	496, 820, 1043
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	2 cut(s)	51, 447
BfmI	CTRYAG	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	1168
BfuI	GTATCC	2 cut(s)	81, 1197
BisI	GCNGC	3 cut(s)	343, 346, 471
BlsI	GCNGC	3 cut(s)	344, 347, 472
BmcAI	AGTACT	2 cut(s)	140, 356
Bme1390I	CCNGG	2 cut(s)	165, 929
Bme18I	GGWCC	2 cut(s)	422, 524
BmeRI	GACNNNNNGTC	1 cut(s)	718
BmgT120I	GGNCC	4 cut(s)	422, 524, 652, 1101
BmiI	GGNNCC	6 cut(s)	423, 452, 525, 708, 1102, 1171
BmrFI	CCNGG	2 cut(s)	165, 929
BmrI	ACTGGG	1 cut(s)	832
BmsI	GCATC	3 cut(s)	357, 513, 592
BmuI	ACTGGG	1 cut(s)	832
BpiI	GAAGAC	3 cut(s)	600, 684, 1083
BpmI	CTGGAG	1 cut(s)	820
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	1216
BsaJI	CCNNGG	3 cut(s)	371, 1104, 1113
BsaWI	WCCGGW	1 cut(s)	972
Bsc4I	CCNNNNNNNGG	3 cut(s)	358, 539, 703
Bse1I	ACTGG	6 cut(s)	322, 352, 827, 837, 1125, 1166
Bse3DI	GCAATG	5 cut(s)	175, 516, 955, 1124, 1282
BseBI	CCWGG	2 cut(s)	165, 929
BseDI	CCNNGG	3 cut(s)	371, 1104, 1113
BseGI	GGATG	7 cut(s)	160, 348, 512, 607, 777, 1170, 1270
BseLI	CCNNNNNNNGG	3 cut(s)	358, 539, 703
BseMI	GCAATG	5 cut(s)	175, 516, 955, 1124, 1282
BseMII	CTCAG	3 cut(s)	210, 507, 578
BseNI	ACTGG	6 cut(s)	322, 352, 827, 837, 1125, 1166
BseRI	GAGGAG	2 cut(s)	749, 1061
BseXI	GCAGC	3 cut(s)	329, 332, 457
BshFI	GGCC	3 cut(s)	654, 1103, 1205
BsiSI	CCGG	1 cut(s)	973
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	3 cut(s)	358, 539, 703
BsmAI	GTCTC	3 cut(s)	496, 820, 1043
BsmFI	GGGAC	1 cut(s)	537
BsnI	GGCC	3 cut(s)	654, 1103, 1205
Bsp143I	GATC	3 cut(s)	211, 450, 1138
Bsp19I	CCATGG	1 cut(s)	1104
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	3 cut(s)	654, 1103, 1205
BspCNI	CTCAG	3 cut(s)	209, 506, 577
BspLI	GGNNCC	6 cut(s)	423, 452, 525, 708, 1102, 1171
BspMI	ACCTGC	1 cut(s)	1168
BspPI	GGATC	2 cut(s)	445, 458
BsrDI	GCAATG	5 cut(s)	175, 516, 955, 1124, 1282
BsrI	ACTGG	6 cut(s)	322, 352, 827, 837, 1125, 1166
BssECI	CCNNGG	3 cut(s)	371, 1104, 1113
BssMI	GATC	3 cut(s)	211, 450, 1138
BssT1I	CCWWGG	3 cut(s)	371, 1104, 1113
Bst2UI	CCWGG	2 cut(s)	165, 929
Bst4CI	ACNGT	3 cut(s)	99, 609, 1285
Bst6I	CTCTTC	2 cut(s)	324, 381
BstC8I	GCNNGC	2 cut(s)	340, 1273
BstDEI	CTNAG	3 cut(s)	196, 493, 564
BstDSI	CCRYGG	1 cut(s)	1104
BstEII	GGTNACC	1 cut(s)	1108
BstF5I	GGATG	7 cut(s)	160, 348, 512, 607, 777, 1170, 1270
BstKTI	GATC	3 cut(s)	214, 453, 1141
BstMAI	GTCTC	3 cut(s)	496, 820, 1043
BstMBI	GATC	3 cut(s)	211, 450, 1138
BstMWI	GCNNNNNNNGC	2 cut(s)	706, 1277
BstNI	CCWGG	2 cut(s)	165, 929
BstNSI	RCATGY	1 cut(s)	342
BstPI	GGTNACC	1 cut(s)	1108
BstSCI	CCNGG	2 cut(s)	163, 927
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	329, 332, 457
BstV2I	GAAGAC	3 cut(s)	600, 684, 1083
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuI	GTATCC	2 cut(s)	81, 1197
BsuRI	GGCC	3 cut(s)	654, 1103, 1205
BtgI	CCRYGG	1 cut(s)	1104
BtgZI	GCGATG	1 cut(s)	490
BtsCI	GGATG	7 cut(s)	160, 348, 512, 607, 777, 1170, 1270
BtsI	GCAGTG	1 cut(s)	1048
BtsIMutI	CAGTG	4 cut(s)	329, 645, 1048, 1281
BveI	ACCTGC	1 cut(s)	1168
Cac8I	GCNNGC	2 cut(s)	340, 1273
Cfr13I	GGNCC	4 cut(s)	422, 524, 652, 1101
Csp6I	GTAC	3 cut(s)	139, 355, 1118
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	6 cut(s)	218, 339, 528, 583, 993, 1105
CviQI	GTAC	3 cut(s)	139, 355, 1118
DdeI	CTNAG	3 cut(s)	196, 493, 564
DpnI	GATC	3 cut(s)	213, 452, 1140
DpnII	GATC	3 cut(s)	211, 450, 1138
DriI	GACNNNNNGTC	1 cut(s)	718
Eam1104I	CTCTTC	2 cut(s)	324, 381
Eam1105I	GACNNNNNGTC	1 cut(s)	718
EarI	CTCTTC	2 cut(s)	324, 381
Eco130I	CCWWGG	3 cut(s)	371, 1104, 1113
Eco147I	AGGCCT	1 cut(s)	1205
Eco47I	GGWCC	2 cut(s)	422, 524
Eco57I	CTGAAG	1 cut(s)	287
Eco91I	GGTNACC	1 cut(s)	1108
EcoO65I	GGTNACC	1 cut(s)	1108
EcoRI	GAATTC	1 cut(s)	578
EcoRII	CCWGG	2 cut(s)	163, 927
EcoT14I	CCWWGG	3 cut(s)	371, 1104, 1113
ErhI	CCWWGG	3 cut(s)	371, 1104, 1113
FaeI	CATG	6 cut(s)	221, 342, 531, 586, 996, 1108
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	6 cut(s)	217, 338, 527, 582, 992, 1104
FauI	CCCGC	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	343, 346, 471
FokI	GGATG	7 cut(s)	147, 335, 499, 614, 784, 1177, 1277
Fsp4HI	GCNGC	3 cut(s)	343, 346, 471
FspBI	CTAG	2 cut(s)	51, 447
GluI	GCNGC	3 cut(s)	343, 346, 471
GsuI	CTGGAG	1 cut(s)	820
HaeIII	GGCC	3 cut(s)	654, 1103, 1205
HapII	CCGG	1 cut(s)	973
Hin1II	CATG	6 cut(s)	221, 342, 531, 586, 996, 1108
HincII	GTYRAC	3 cut(s)	205, 223, 978
HindII	GTYRAC	3 cut(s)	205, 223, 978
HinfI	GANTC	6 cut(s)	254, 266, 275, 875, 955, 1031
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	973
HphI	GGTGA	3 cut(s)	50, 206, 1120
Hpy166II	GTNNAC	3 cut(s)	205, 223, 978
Hpy188I	TCNGA	5 cut(s)	199, 724, 760, 1226, 1295
Hpy188III	TCNNGA	3 cut(s)	566, 1028, 1190
Hpy8I	GTNNAC	3 cut(s)	205, 223, 978
Hpy99I	CGWCG	1 cut(s)	1135
HpyAV	CCTTC	4 cut(s)	77, 799, 1034, 1091
HpyCH4III	ACNGT	3 cut(s)	99, 609, 1285
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	6 cut(s)	180, 338, 348, 605, 748, 1238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	706, 1277
HpyF3I	CTNAG	3 cut(s)	196, 493, 564
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	6 cut(s)	221, 342, 531, 586, 996, 1108
Ksp22I	TGATCA	1 cut(s)	211
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	211, 450, 1138
LmnI	GCTCC	3 cut(s)	706, 839, 1169
Lsp1109I	GCAGC	3 cut(s)	329, 332, 457
LweI	GCATC	3 cut(s)	357, 513, 592
MaeI	CTAG	2 cut(s)	51, 447
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	4 cut(s)	53, 613, 776, 1108
MalI	GATC	3 cut(s)	213, 452, 1140
MboI	GATC	3 cut(s)	211, 450, 1138
MflI	RGATCY	1 cut(s)	450
MluCI	AATT	5 cut(s)	258, 416, 578, 686, 912
MlyI	GAGTC	3 cut(s)	248, 260, 269
MmeI	TCCRAC	4 cut(s)	272, 478, 843, 986
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	3 cut(s)	204, 552, 800
MspI	CCGG	1 cut(s)	973
MspR9I	CCNGG	2 cut(s)	165, 929
MvaI	CCWGG	2 cut(s)	165, 929
MwoI	GCNNNNNNNGC	2 cut(s)	706, 1277
NcoI	CCATGG	1 cut(s)	1104
NdeII	GATC	3 cut(s)	211, 450, 1138
NlaIII	CATG	6 cut(s)	221, 342, 531, 586, 996, 1108
NlaIV	GGNNCC	6 cut(s)	423, 452, 525, 708, 1102, 1171
NmeAIII	GCCGAG	1 cut(s)	1198
NmuCI	GTSAC	3 cut(s)	53, 613, 1108
NspI	RCATGY	1 cut(s)	342
PaeI	GCATGC	1 cut(s)	342
PceI	AGGCCT	1 cut(s)	1205
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	875, 955, 1031
PflFI	GACNNNGTC	1 cut(s)	528
PflMI	CCANNNNNTGG	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	927
PkrI	GCNGC	3 cut(s)	344, 347, 472
PleI	GAGTC	3 cut(s)	248, 260, 269
PpsI	GAGTC	3 cut(s)	248, 260, 269
Psp6I	CCWGG	2 cut(s)	163, 927
PspEI	GGTNACC	1 cut(s)	1108
PspGI	CCWGG	2 cut(s)	163, 927
PspN4I	GGNNCC	6 cut(s)	423, 452, 525, 708, 1102, 1171
PspPI	GGNCC	4 cut(s)	422, 524, 652, 1101
PsuI	RGATCY	1 cut(s)	450
PsyI	GACNNNGTC	1 cut(s)	528
RsaI	GTAC	3 cut(s)	140, 356, 1119
RsaNI	GTAC	3 cut(s)	139, 355, 1118
SaqAI	TTAA	3 cut(s)	204, 552, 800
SatI	GCNGC	3 cut(s)	343, 346, 471
Sau3AI	GATC	3 cut(s)	211, 450, 1138
Sau96I	GGNCC	4 cut(s)	422, 524, 652, 1101
ScaI	AGTACT	2 cut(s)	140, 356
SchI	GAGTC	3 cut(s)	248, 260, 269
ScrFI	CCNGG	2 cut(s)	165, 929
SfaNI	GCATC	3 cut(s)	357, 513, 592
SfcI	CTRYAG	1 cut(s)	103
SinI	GGWCC	2 cut(s)	422, 524
SmlI	CTYRAG	1 cut(s)	1195
SmoI	CTYRAG	1 cut(s)	1195
SpeI	ACTAGT	1 cut(s)	50
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	5 cut(s)	258, 416, 578, 686, 912
SseBI	AGGCCT	1 cut(s)	1205
SsiI	CCGC	1 cut(s)	521
SspI	AATATT	2 cut(s)	441, 744
SspMI	CTAG	2 cut(s)	51, 447
StuI	AGGCCT	1 cut(s)	1205
StyD4I	CCNGG	2 cut(s)	163, 927
StyI	CCWWGG	3 cut(s)	371, 1104, 1113
TaaI	ACNGT	3 cut(s)	99, 609, 1285
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	2 cut(s)	273, 1133
TasI	AATT	5 cut(s)	258, 416, 578, 686, 912
TatI	WGTACW	2 cut(s)	138, 354
TfiI	GAWTC	3 cut(s)	875, 955, 1031
Tru1I	TTAA	3 cut(s)	204, 552, 800
Tru9I	TTAA	3 cut(s)	204, 552, 800
TscAI	CASTG	4 cut(s)	329, 645, 1048, 1288
TseFI	GTSAC	3 cut(s)	53, 613, 1108
TseI	GCWGC	3 cut(s)	342, 345, 470
Tsp45I	GTSAC	3 cut(s)	53, 613, 1108
TspDTI	ATGAA	4 cut(s)	571, 660, 818, 1031
TspRI	CASTG	4 cut(s)	329, 645, 1048, 1288
Tth111I	GACNNNGTC	1 cut(s)	528
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	422, 524
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1111
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	2 cut(s)	51, 447
ZrmI	AGTACT	2 cut(s)	140, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.