RLG00000004841

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
62971367 .. 62973882
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004841

Sequence Viewer

Length: 1662 bp
ATGGACAAAGCTTTAAAAACCAAGCCTTGCAGACTTGGTGATCAGAATACCAGCGACGTTGTCATCTGCTTGAAGGACAGAGAAGGAAGACACCAACAGTTTTACTCCCACTCCTCTGTTCTCATAAAAAGGAGCAAGTACTTTGCTGAACGGTTGTCTAATCGAGACCCTAGTAATTCCATTAATGTTCATTGCTCTGAGGTCAACTACGATCACCATGTCAACCTGTTGAGGCTGCTCTATCTTCCAACAGAGTTGATTTTGGACGCATTGGACTCTGTTAAGTCTGCTGTTGGTATTCTTCAGTCAGCAGTTTCCTTCAAGTGTGACGAGATTGTGTCCTGCTGCATCCAGTACTTGGAGGCTGTTCCTTGGGAGGACAAAGAAGAAGAGCACATCTTAAAAGCTGTATCAAAGTTGGGTCCTATAGCTATGCCCATAATAGCTAGGATCCAACCTGTTGATTTAGCTGCCACCAAAACTGTTTTGATCTCAGCAATTCGTGTTGCCACATCCATTGTTGGACCATGTCCTCCATTCGGCAATGAGCTTAAAACTTCTGCTCAAGAGCAAGTCGAATACATGTTAGGAGAAGATGAGGATACACCGTTGGTCACAGCAGATGATGAAGTCAGATCAGTGGTAAGAACAGGTCTGTCGCATATTTGTGCAACATTTGAAAAGGATTTGTCTTCCTTACTTTTGGAGCCAGACCTTGCATCCGAGACAGCAGATGAGAAAATAATGCATAGTTTATCGGATCTTGAATGGATGTGTAGCATACTCGGAAAGATGGATTTGATGAAGGATTTCGTTTCCAACTGGGCTGAAAGCTCCAGTAATGTTTTAGGAGTGATCGAGGACAAGAAACTTGATTCGTTTATGTGGGGCTTGAAGATCAAGCTCATAGAAGTCACTGCTAAAGTCTTGGAAGCAGTTGGGTATGGTAATGTGATTCTTCCAGCTCCAATTCGCTTGACATTACTGAAGTCATGGCTCCCTTATATTAGGAAAATGAAGCCACTCTTGGATAAAAGGGGCAGCGAGGACACAGGTTTTCCATACAAGATGAATGAAGACTTGTGCCAGACCATCGAAGGTGCCATTGTCACCTTAGTACTAGCGTTACCATCAAATGATCAAGCCGACATTCTGGCAGACTGGATGAGAGCCGAGCAGGTTCGGTATCCTGACTTGAGCGAGGCTTTCGAGTGGAAGGACATTATCAAACTGCCCAAATCCGAGACTAGAGAATCAACAACTCCAGATCTCACAGAATCAACTGGATCTCCCATATCCGTTCAACTCCGCCGTTGTCTCCCTTCGCCGACTCTTGCCTCCCACAGATCACTGTTGCCGCCGACAGATTCCCTTGCTTCTCCCACAGATCGACAGCGACGACATCGTCTCGGCCTTGGAAGGAAACTCCAATCCGGTGACGATCCCGGCGAAATCTTGCCTCTCTCCAGCGTCGCCGAACTAGAACTCCGATATGGAATGTCGAGCTCGACGAGACCCGGTCGATCCAGTGTGCTGCCAAAGCCATCTAAGACGAAAACTCAGACCTTCACCGGCGACAATGACTTCTCCCCTAACTCATTGACTGCTCGAGCTGCATGTCGATCACTTTTAGAAAGCTTTTTGATTGCATATTTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

554

Amino Acids

61.49

Weight (kDa)

5.49

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 16 - 121 2.3e-08 BTB/POZ domain
BTB-POZ_ANK-like PF25553 211 - 404 4.9e-07 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1404
Acc36I ACCTGC 1 cut(s) 1168
AccB1I GGYRCC 1 cut(s) 1100
AccB7I CCANNNNNTGG 1 cut(s) 358
AciI CCGC 2 cut(s) 1309, 1358
AclWI GGATC 6 cut(s) 445, 458, 768, 1294, 1436, 1518
AcuI CTGAAG 2 cut(s) 287, 1007
AfaI GTAC 3 cut(s) 140, 356, 1119
AfiI CCNNNNNNNGG 2 cut(s) 358, 539
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 6 cut(s) 73, 322, 680, 767, 895, 1304
AjuI GAANNNNNNNTTGG 2 cut(s) 1010, 1042
AloI GAACNNNNNNTCC 2 cut(s) 1470, 1502
Alw21I GWGCWC 2 cut(s) 396, 1508
Alw26I GTCTC 6 cut(s) 159, 719, 1238, 1322, 1412, 1507
AlwI GGATC 6 cut(s) 445, 458, 768, 1294, 1436, 1518
Ama87I CYCGRG 1 cut(s) 1608
AoxI GGCC 1 cut(s) 1411
ApeKI GCWGC 6 cut(s) 235, 345, 470, 1041, 1534, 1613
AseI ATTAAT 1 cut(s) 183
Asp700I GAANNNNTTC 1 cut(s) 809
AspS9I GGNCC 2 cut(s) 422, 524
AsuC2I CCSGG 2 cut(s) 1446, 1518
AsuHPI GGTGA 5 cut(s) 50, 206, 1102, 1448, 1561
AvaI CYCGRG 1 cut(s) 1608
AvaII GGWCC 2 cut(s) 422, 524
BamHI GGATCC 1 cut(s) 450
BanI GGYRCC 1 cut(s) 1100
BanII GRGCYC 1 cut(s) 1508
BbsI GAAGAC 3 cut(s) 94, 684, 1083
Bbv12I GWGCWC 2 cut(s) 396, 1508
BbvI GCAGC 6 cut(s) 222, 332, 457, 1053, 1521, 1600
BccI CCATC 4 cut(s) 787, 1100, 1138, 1552
BceAI ACGGC 1 cut(s) 1296
BciVI GTATCC 2 cut(s) 595, 1197
BclI TGATCA 2 cut(s) 40, 1138
BcnI CCSGG 2 cut(s) 1446, 1518
BcoDI GTCTC 6 cut(s) 159, 719, 1238, 1322, 1412, 1507
BfaI CTAG 5 cut(s) 171, 447, 1121, 1248, 1481
BfmI CTRYAG 1 cut(s) 426
BfuAI ACCTGC 1 cut(s) 1168
BfuI GTATCC 2 cut(s) 595, 1197
BglII AGATCT 1 cut(s) 1267
BisI GCNGC 7 cut(s) 236, 346, 471, 1042, 1358, 1535, 1614
BlsI GCNGC 7 cut(s) 237, 347, 472, 1043, 1359, 1536, 1615
BmcAI AGTACT 3 cut(s) 140, 356, 1119
Bme1390I CCNGG 2 cut(s) 1446, 1518
Bme18I GGWCC 2 cut(s) 422, 524
BmeT110I CYCGRG 1 cut(s) 1608
BmgT120I GGNCC 2 cut(s) 422, 524
BmiI GGNNCC 5 cut(s) 423, 452, 708, 998, 1102
BmrFI CCNGG 2 cut(s) 1446, 1518
BmrI ACTGGG 1 cut(s) 832
BmsI GCATC 2 cut(s) 357, 728
BmuI ACTGGG 1 cut(s) 832
BpiI GAAGAC 3 cut(s) 94, 684, 1083
BpmI CTGGAG 3 cut(s) 820, 1248, 1450
BpuEI CTTGAG 2 cut(s) 549, 1216
BpuMI CCSGG 2 cut(s) 1446, 1518
BsaI GGTCTC 2 cut(s) 159, 1507
BsaJI CCNNGG 2 cut(s) 371, 1414
BsaWI WCCGGW 1 cut(s) 1433
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 1273, 1303, 1470, 1500
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 539
Bse118I RCCGGY 1 cut(s) 1571
Bse1I ACTGG 6 cut(s) 352, 827, 837, 1166, 1288, 1527
Bse3DI GCAATG 2 cut(s) 190, 550
BseDI CCNNGG 2 cut(s) 371, 1414
BseGI GGATG 5 cut(s) 348, 512, 719, 777, 1170
BseLI CCNNNNNNNGG 2 cut(s) 358, 539
BseMI GCAATG 2 cut(s) 190, 550
BseMII CTCAG 3 cut(s) 189, 507, 1574
BseNI ACTGG 6 cut(s) 352, 827, 837, 1166, 1288, 1527
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 6 cut(s) 222, 332, 457, 1053, 1521, 1600
Bsh1285I CGRYCG 1 cut(s) 1522
BshFI GGCC 1 cut(s) 1413
BshNI GGYRCC 1 cut(s) 1100
BsiEI CGRYCG 1 cut(s) 1522
BsiHKAI GWGCWC 2 cut(s) 396, 1508
BsiHKCI CYCGRG 1 cut(s) 1608
BsiSI CCGG 4 cut(s) 1434, 1446, 1518, 1572
BslI CCNNNNNNNGG 2 cut(s) 358, 539
BsmAI GTCTC 6 cut(s) 159, 719, 1238, 1322, 1412, 1507
BsmBI CGTCTC 1 cut(s) 1412
BsnI GGCC 1 cut(s) 1413
Bso31I GGTCTC 2 cut(s) 159, 1507
BsoBI CYCGRG 1 cut(s) 1608
Bsp1286I GDGCHC 2 cut(s) 396, 1508
BspACI CCGC 2 cut(s) 1309, 1358
BspANI GGCC 1 cut(s) 1413
BspCNI CTCAG 3 cut(s) 190, 506, 1573
BspLI GGNNCC 5 cut(s) 423, 452, 708, 998, 1102
BspMI ACCTGC 1 cut(s) 1168
BspPI GGATC 6 cut(s) 445, 458, 768, 1294, 1436, 1518
BspQI GCTCTTC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 1100
BspTNI GGTCTC 2 cut(s) 159, 1507
BsrDI GCAATG 2 cut(s) 190, 550
BsrFI RCCGGY 1 cut(s) 1571
BsrI ACTGG 6 cut(s) 352, 827, 837, 1166, 1288, 1527
BssAI RCCGGY 1 cut(s) 1571
BssECI CCNNGG 2 cut(s) 371, 1414
BssT1I CCWWGG 2 cut(s) 371, 1414
Bst4CI ACNGT 5 cut(s) 99, 153, 484, 609, 1353
Bst6I CTCTTC 1 cut(s) 384
BstDEI CTNAG 5 cut(s) 198, 493, 1114, 1548, 1560
BstF5I GGATG 5 cut(s) 348, 512, 719, 777, 1170
BstMAI GTCTC 6 cut(s) 159, 719, 1238, 1322, 1412, 1507
BstMCI CGRYCG 1 cut(s) 1522
BstMWI GCNNNNNNNGC 2 cut(s) 1540, 1613
BstNSI RCATGY 2 cut(s) 586, 1620
BstSCI CCNGG 2 cut(s) 1444, 1516
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 6 cut(s) 222, 332, 457, 1053, 1521, 1600
BstV2I GAAGAC 3 cut(s) 94, 684, 1083
BstX2I RGATCY 4 cut(s) 450, 760, 1267, 1286
BstYI RGATCY 4 cut(s) 450, 760, 1267, 1286
BsuI GTATCC 2 cut(s) 595, 1197
BsuRI GGCC 1 cut(s) 1413
BtsCI GGATG 5 cut(s) 348, 512, 719, 777, 1170
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 4 cut(s) 645, 915, 1349, 1534
BveI ACCTGC 1 cut(s) 1168
Cfr10I RCCGGY 1 cut(s) 1571
Cfr13I GGNCC 2 cut(s) 422, 524
CseI GACGC 2 cut(s) 275, 1459
Csp6I GTAC 3 cut(s) 139, 355, 1118
CspCI CAANNNNNGTGG 2 cut(s) 499, 534
CviAII CATG 5 cut(s) 218, 528, 583, 993, 1617
CviQI GTAC 3 cut(s) 139, 355, 1118
DdeI CTNAG 5 cut(s) 198, 493, 1114, 1548, 1560
DraI TTTAAA 1 cut(s) 15
DrdI GACNNNNNNGTC 1 cut(s) 1404
DseDI GACNNNNNNGTC 1 cut(s) 1404
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
EciI GGCGGA 1 cut(s) 1298
Ecl136II GAGCTC 1 cut(s) 1506
Eco130I CCWWGG 2 cut(s) 371, 1414
Eco24I GRGCYC 1 cut(s) 1508
Eco31I GGTCTC 2 cut(s) 159, 1507
Eco47I GGWCC 2 cut(s) 422, 524
Eco53kI GAGCTC 1 cut(s) 1506
Eco57I CTGAAG 2 cut(s) 287, 1007
Eco88I CYCGRG 1 cut(s) 1608
EcoICRI GAGCTC 1 cut(s) 1506
EcoO109I RGGNCCY 1 cut(s) 422
EcoT14I CCWWGG 2 cut(s) 371, 1414
EcoT22I ATGCAT 1 cut(s) 750
EcoT38I GRGCYC 1 cut(s) 1508
ErhI CCWWGG 2 cut(s) 371, 1414
Esp3I CGTCTC 1 cut(s) 1412
FaeI CATG 5 cut(s) 221, 531, 586, 996, 1620
FalI AAGNNNNNCTT 2 cut(s) 1010, 1042
FatI CATG 5 cut(s) 217, 527, 582, 992, 1616
FbaI TGATCA 2 cut(s) 40, 1138
Fnu4HI GCNGC 7 cut(s) 236, 346, 471, 1042, 1358, 1535, 1614
FokI GGATG 5 cut(s) 335, 499, 706, 784, 1177
FriOI GRGCYC 1 cut(s) 1508
Fsp4HI GCNGC 7 cut(s) 236, 346, 471, 1042, 1358, 1535, 1614
FspBI CTAG 5 cut(s) 171, 447, 1121, 1248, 1481
GluI GCNGC 7 cut(s) 236, 346, 471, 1042, 1358, 1535, 1614
GsuI CTGGAG 3 cut(s) 820, 1248, 1450
HaeIII GGCC 1 cut(s) 1413
HapII CCGG 4 cut(s) 1434, 1446, 1518, 1572
HgaI GACGC 2 cut(s) 275, 1459
Hin1II CATG 5 cut(s) 221, 531, 586, 996, 1620
HincII GTYRAC 2 cut(s) 205, 223
HindII GTYRAC 2 cut(s) 205, 223
HindIII AAGCTT 2 cut(s) 9, 1636
HinfI GANTC 7 cut(s) 275, 875, 955, 1253, 1277, 1330, 1367
HpaII CCGG 4 cut(s) 1434, 1446, 1518, 1572
HphI GGTGA 5 cut(s) 50, 206, 1102, 1448, 1561
Hpy166II GTNNAC 2 cut(s) 205, 223
Hpy188I TCNGA 9 cut(s) 45, 199, 635, 724, 760, 788, 1243, 1490, 1563
Hpy188III TCNNGA 5 cut(s) 164, 566, 764, 1190, 1265
Hpy8I GTNNAC 2 cut(s) 205, 223
Hpy99I CGWCG 4 cut(s) 59, 1401, 1475, 1513
HpyAV CCTTC 9 cut(s) 67, 77, 328, 799, 1091, 1210, 1332, 1413, 1576
HpyCH4III ACNGT 5 cut(s) 99, 153, 484, 609, 1353
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 7 cut(s) 30, 348, 671, 719, 748, 1616, 1649
HpyF10VI GCNNNNNNNGC 2 cut(s) 1540, 1613
HpyF3I CTNAG 5 cut(s) 198, 493, 1114, 1548, 1560
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 5 cut(s) 221, 531, 586, 996, 1620
Ksp22I TGATCA 2 cut(s) 40, 1138
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 5 cut(s) 132, 706, 839, 970, 1002
Lsp1109I GCAGC 6 cut(s) 222, 332, 457, 1053, 1521, 1600
LweI GCATC 2 cut(s) 357, 728
MaeI CTAG 5 cut(s) 171, 447, 1121, 1248, 1481
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 6 cut(s) 326, 613, 913, 1108, 1125, 1436
MflI RGATCY 4 cut(s) 450, 760, 1267, 1286
MhlI GDGCHC 2 cut(s) 396, 1508
MluCI AATT 3 cut(s) 175, 498, 969
MlyI GAGTC 2 cut(s) 269, 1324
MmeI TCCRAC 4 cut(s) 272, 478, 502, 843
Mph1103I ATGCAT 1 cut(s) 750
MroXI GAANNNNTTC 1 cut(s) 809
MseI TTAA 5 cut(s) 14, 183, 282, 401, 552
MslI CAYNNNNRTG 1 cut(s) 666
MspI CCGG 4 cut(s) 1434, 1446, 1518, 1572
MspR9I CCNGG 2 cut(s) 1446, 1518
MwoI GCNNNNNNNGC 2 cut(s) 1540, 1613
NciI CCSGG 2 cut(s) 1446, 1518
NlaIII CATG 5 cut(s) 221, 531, 586, 996, 1620
NlaIV GGNNCC 5 cut(s) 423, 452, 708, 998, 1102
NmeAIII GCCGAG 2 cut(s) 1198, 1389
NmuCI GTSAC 5 cut(s) 326, 613, 913, 1108, 1436
NsiI ATGCAT 1 cut(s) 750
NspI RCATGY 2 cut(s) 586, 1620
PaeR7I CTCGAG 1 cut(s) 1608
PciI ACATGT 1 cut(s) 582
PciSI GCTCTTC 1 cut(s) 384
PcsI WCGNNNNNNNCGW 3 cut(s) 1396, 1446, 1508
PdmI GAANNNNTTC 1 cut(s) 809
PfeI GAWTC 5 cut(s) 875, 955, 1253, 1277, 1367
PflFI GACNNNGTC 4 cut(s) 59, 528, 1404, 1518
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 7 cut(s) 237, 347, 472, 1043, 1359, 1536, 1615
PleI GAGTC 2 cut(s) 269, 1324
PpsI GAGTC 2 cut(s) 269, 1324
PpuMI RGGWCCY 1 cut(s) 422
PscI ACATGT 1 cut(s) 582
PshBI ATTAAT 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 1508
Psp5II RGGWCCY 1 cut(s) 422
PspN4I GGNNCC 5 cut(s) 423, 452, 708, 998, 1102
PspPI GGNCC 2 cut(s) 422, 524
PspPPI RGGWCCY 1 cut(s) 422
PspXI VCTCGAGB 1 cut(s) 1608
PsuI RGATCY 4 cut(s) 450, 760, 1267, 1286
PsyI GACNNNGTC 4 cut(s) 59, 528, 1404, 1518
RsaI GTAC 3 cut(s) 140, 356, 1119
RsaNI GTAC 3 cut(s) 139, 355, 1118
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 1 cut(s) 1508
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 5 cut(s) 14, 183, 282, 401, 552
SatI GCNGC 7 cut(s) 236, 346, 471, 1042, 1358, 1535, 1614
Sau96I GGNCC 2 cut(s) 422, 524
ScaI AGTACT 3 cut(s) 140, 356, 1119
SchI GAGTC 2 cut(s) 269, 1324
ScrFI CCNGG 2 cut(s) 1446, 1518
SduI GDGCHC 2 cut(s) 396, 1508
SfaNI GCATC 2 cut(s) 357, 728
SfcI CTRYAG 1 cut(s) 426
Sfr274I CTCGAG 1 cut(s) 1608
SgrAI CRCCGGYG 1 cut(s) 1571
SinI GGWCC 2 cut(s) 422, 524
SlaI CTCGAG 1 cut(s) 1608
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 3 cut(s) 564, 1195, 1608
SmoI CTYRAG 3 cut(s) 564, 1195, 1608
Sse9I AATT 3 cut(s) 175, 498, 969
SsiI CCGC 2 cut(s) 1309, 1358
SspMI CTAG 5 cut(s) 171, 447, 1121, 1248, 1481
SstI GAGCTC 1 cut(s) 1508
StyD4I CCNGG 2 cut(s) 1444, 1516
StyI CCWWGG 2 cut(s) 371, 1414
TaaI ACNGT 5 cut(s) 99, 153, 484, 609, 1353
TaiI ACGT 1 cut(s) 60
TasI AATT 3 cut(s) 175, 498, 969
TatI WGTACW 3 cut(s) 138, 354, 1117
TauI GCSGC 1 cut(s) 1360
TfiI GAWTC 5 cut(s) 875, 955, 1253, 1277, 1367
Tru1I TTAA 5 cut(s) 14, 183, 282, 401, 552
Tru9I TTAA 5 cut(s) 14, 183, 282, 401, 552
TscAI CASTG 4 cut(s) 645, 922, 1356, 1534
TseFI GTSAC 5 cut(s) 326, 613, 913, 1108, 1436
TseI GCWGC 6 cut(s) 235, 345, 470, 1041, 1534, 1613
Tsp45I GTSAC 5 cut(s) 326, 613, 913, 1108, 1436
TspDTI ATGAA 6 cut(s) 179, 642, 818, 1031, 1085, 1089
TspGWI ACGGA 1 cut(s) 1288
TspRI CASTG 4 cut(s) 645, 922, 1356, 1534
Tth111I GACNNNGTC 4 cut(s) 59, 528, 1404, 1518
Van91I CCANNNNNTGG 1 cut(s) 358
VpaK11BI GGWCC 2 cut(s) 422, 524
VspI ATTAAT 1 cut(s) 183
XceI RCATGY 2 cut(s) 586, 1620
XhoI CTCGAG 1 cut(s) 1608
XmnI GAANNNNTTC 1 cut(s) 809
XspI CTAG 5 cut(s) 171, 447, 1121, 1248, 1481
ZrmI AGTACT 3 cut(s) 140, 356, 1119
Zsp2I ATGCAT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.