Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006405

Physical Location & Seq

Genomic Coordinates Forward (+)

4619873 .. 4622745

Gene Structure 2873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG066600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGACAAAGCTTTGAAAACCAAGCCTTGCAGACTTGGTGATCAGAATACCAGCGACGTTGTCATCTGCTTGAAGGACAGAGAAGGAAGACACCAACAGTTTTACTCCCACTCATCTGTTCTCATAAAAAGGAGCAAGTACTTTGCTGAACGGTTGTCTAATCCAGACCGTAGTAATTCCATTAATGTTCATTGCTCTGAGTTCAACTATGATCACCATGTCAACCTGTTGAGGCTGCTCTATCTTCCAACAGAGTTGATTTTGGACACATTGGACTCTGTTAAGTCTGCTGTCGGTATTCTTCAGTCAGCAGTTTCCTTCAAGTGTGACGAGATTGTGTCCTGCTGCATCCAGTACTTGGAGGCTGTTCCTTGGGAGGACAAAGAAGAAGAGCACATCTTAAAAGCTGTATCAAAGTTGGGTCCTGTAGCTATGCCCATAATAGCTAGGATCCAACCTGTTGATTTAGCTGCCACCAAAACTGTTTTGATCTCAGCAATTCGTGTGGCCACATCCATTGTTGGACCATGTCCTCCATTCGGCAATGAGCTTAAAACTTCTGCTCAAGAGCAAGTCGAATACATGTTAGGAGAAGATGAGGATACACCGTTGGTCACAGCAGATGATGAAGTCAGATCAGTGGTAAGAACAGGTCTGTCACATATTTGTGCAACATTTGAAAAGGATCTGTCTTCCTTACTTTTGGAGCCAGACCTTGCATCCGAGACAGCAGATGAGAAAATAATGCATAGTTTATCGGATCTTGAATGGATGTGTAGCATACTGGGAAAGATGGATTTGATGAAGGATTTCGTTTCCAACTGGGCTGAAAGCTCCAGTAATGTTTTAGGAGTGATCGAGGACAAGAAACTTGATTCGTTTATGTGGGGCTTGAAGATTAAGCTCATAGAAGTGACTGCTAAAGTCTTGGAAGCAGTTGGGTATGGTAATGTGATTCTTCCAGCTCCAATTCGCTTGACATTACTGAAGTCATGGCTCCCTTATATTAGGAAGATGAAGCCACTCTTGGATAAAAGGGGCAGCGAGGACACAGGTTTTCCATACAAGATGAACGAAGACTTGTGCCAGACGATCGAAGGTGCCATTGTCACCTTAGTACTAGCGTTACCATCAAATGATCAAGCCGACATTCTGGCGGACTGGATGAGAGCCGAGCAGGTTCGGTATCCGGACTTGAGCGAGGCTTTCGAGGTCTGGTGTTTCAGAACAAAGTCTGCAAAGAGAAGATTAGTGGAGGGATTGGATGGGGCTGGCAATGCCACACTTACCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

431

Amino Acids

48.17

Weight (kDa)

5.13

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	16 - 121	3.2e-08	BTB/POZ domain
BTB-POZ_ANK-like	PF25553	211 - 409	1.1e-09	BTB/POZ Ankyrin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_5g11380 FvH4_5g11380
malus_domestica	MD06G1114200.v1.1 MD14G1135500.v1.1
prunus_persica	Prupe.5G127000_v2.0.a1 Prupe.5G127000_v2.0.a1
pyrus_communis	pycom06g10680 pycom14g10870
rosa_chinensis	RchiOBHm_Chr7g0186491
rosa_laevigata	RLG00000004841
rosa_multiflora	Rmu_co8455067.1_g000001 Rmu_sc0000645.1_g000031
rosa_roxburghii	Rroxscaffold_3G00268100 Rroxscaffold_4G00302490
rosa_rugosa	Rorug06G0474700
rosa_samantha	Rh6CG051800 Rh7AG066600 Rh7BG082400 Rh7CG081200 Rh7DG082000
rosa_wichuraiana	Rw7G006820 Rw7G007060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1168
AccB1I	GGYRCC	1 cut(s)	1100
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccIII	TCCGGA	1 cut(s)	1189
AciI	CCGC	1 cut(s)	1157
AclWI	GGATC	4 cut(s)	445, 458, 693, 768
AcoI	YGGCCR	1 cut(s)	507
AcuI	CTGAAG	2 cut(s)	287, 1007
AfaI	GTAC	3 cut(s)	140, 356, 1119
AfiI	CCNNNNNNNGG	2 cut(s)	358, 539
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	7 cut(s)	16, 73, 205, 322, 680, 767, 895
AjuI	GAANNNNNNNTTGG	2 cut(s)	1010, 1042
AluBI	AGCT	9 cut(s)	11, 407, 431, 446, 470, 550, 834, 904, 965
AluI	AGCT	9 cut(s)	11, 407, 431, 446, 470, 550, 834, 904, 965
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	719
AlwI	GGATC	4 cut(s)	445, 458, 693, 768
Aor13HI	TCCGGA	1 cut(s)	1189
AoxI	GGCC	1 cut(s)	507
ApeKI	GCWGC	4 cut(s)	235, 345, 470, 1041
AseI	ATTAAT	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	809
AspS9I	GGNCC	2 cut(s)	422, 524
AsuHPI	GGTGA	3 cut(s)	50, 206, 1102
AvaII	GGWCC	2 cut(s)	422, 524
BalI	TGGCCA	1 cut(s)	509
BamHI	GGATCC	1 cut(s)	450
BanI	GGYRCC	1 cut(s)	1100
BbsI	GAAGAC	3 cut(s)	94, 684, 1083
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	4 cut(s)	222, 332, 457, 1053
BccI	CCATC	3 cut(s)	787, 1138, 1259
BciVI	GTATCC	2 cut(s)	595, 1197
BclI	TGATCA	3 cut(s)	40, 211, 1138
BcoDI	GTCTC	1 cut(s)	719
BfaI	CTAG	2 cut(s)	447, 1121
BfmI	CTRYAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	1168
BfuI	GTATCC	2 cut(s)	595, 1197
BisI	GCNGC	4 cut(s)	236, 346, 471, 1042
BlsI	GCNGC	4 cut(s)	237, 347, 472, 1043
BmcAI	AGTACT	3 cut(s)	140, 356, 1119
Bme18I	GGWCC	2 cut(s)	422, 524
BmgT120I	GGNCC	2 cut(s)	422, 524
BmiI	GGNNCC	5 cut(s)	423, 452, 708, 998, 1102
BmrI	ACTGGG	2 cut(s)	794, 832
BmsI	GCATC	2 cut(s)	357, 728
BmuI	ACTGGG	2 cut(s)	794, 832
BpiI	GAAGAC	3 cut(s)	94, 684, 1083
BpmI	CTGGAG	1 cut(s)	820
BpuEI	CTTGAG	2 cut(s)	549, 1216
BsaJI	CCNNGG	1 cut(s)	371
BsaWI	WCCGGW	1 cut(s)	1189
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 539
Bse1I	ACTGG	5 cut(s)	352, 789, 827, 837, 1166
Bse3DI	GCAATG	3 cut(s)	190, 550, 1282
BseAI	TCCGGA	1 cut(s)	1189
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	6 cut(s)	348, 512, 719, 777, 1170, 1270
BseLI	CCNNNNNNNGG	2 cut(s)	358, 539
BseMI	GCAATG	3 cut(s)	190, 550, 1282
BseMII	CTCAG	2 cut(s)	189, 507
BseNI	ACTGG	5 cut(s)	352, 789, 827, 837, 1166
BseXI	GCAGC	4 cut(s)	222, 332, 457, 1053
Bsh1285I	CGRYCG	1 cut(s)	1095
BshFI	GGCC	1 cut(s)	509
BshNI	GGYRCC	1 cut(s)	1100
BsiEI	CGRYCG	1 cut(s)	1095
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	1190
BslI	CCNNNNNNNGG	2 cut(s)	358, 539
BsmAI	GTCTC	1 cut(s)	719
BsnI	GGCC	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp13I	TCCGGA	1 cut(s)	1189
BspACI	CCGC	1 cut(s)	1157
BspANI	GGCC	1 cut(s)	509
BspCNI	CTCAG	2 cut(s)	190, 506
BspEI	TCCGGA	1 cut(s)	1189
BspLI	GGNNCC	5 cut(s)	423, 452, 708, 998, 1102
BspMI	ACCTGC	1 cut(s)	1168
BspPI	GGATC	4 cut(s)	445, 458, 693, 768
BspQI	GCTCTTC	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	1100
BsrDI	GCAATG	3 cut(s)	190, 550, 1282
BsrI	ACTGG	5 cut(s)	352, 789, 827, 837, 1166
BssECI	CCNNGG	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	371
Bst4CI	ACNGT	5 cut(s)	99, 153, 170, 484, 609
Bst6I	CTCTTC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	1273
BstDEI	CTNAG	3 cut(s)	198, 493, 1114
BstF5I	GGATG	6 cut(s)	348, 512, 719, 777, 1170, 1270
BstMAI	GTCTC	1 cut(s)	719
BstMCI	CGRYCG	1 cut(s)	1095
BstMWI	GCNNNNNNNGC	1 cut(s)	1277
BstNSI	RCATGY	1 cut(s)	586
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	4 cut(s)	222, 332, 457, 1053
BstV2I	GAAGAC	3 cut(s)	94, 684, 1083
BstX2I	RGATCY	3 cut(s)	450, 685, 760
BstYI	RGATCY	3 cut(s)	450, 685, 760
BsuI	GTATCC	2 cut(s)	595, 1197
BsuRI	GGCC	1 cut(s)	509
BtsCI	GGATG	6 cut(s)	348, 512, 719, 777, 1170, 1270
BtsIMutI	CAGTG	1 cut(s)	645
BveI	ACCTGC	1 cut(s)	1168
Cac8I	GCNNGC	1 cut(s)	1273
Cfr13I	GGNCC	2 cut(s)	422, 524
Csp6I	GTAC	3 cut(s)	139, 355, 1118
CspCI	CAANNNNNGTGG	4 cut(s)	486, 499, 521, 534
CviAII	CATG	4 cut(s)	218, 528, 583, 993
CviQI	GTAC	3 cut(s)	139, 355, 1118
DdeI	CTNAG	3 cut(s)	198, 493, 1114
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	1172
Eco130I	CCWWGG	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	422, 524
Eco57I	CTGAAG	2 cut(s)	287, 1007
EcoO109I	RGGNCCY	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	371
EcoT22I	ATGCAT	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	4 cut(s)	221, 531, 586, 996
FalI	AAGNNNNNCTT	2 cut(s)	1010, 1042
FatI	CATG	4 cut(s)	217, 527, 582, 992
FbaI	TGATCA	3 cut(s)	40, 211, 1138
Fnu4HI	GCNGC	4 cut(s)	236, 346, 471, 1042
FokI	GGATG	6 cut(s)	335, 499, 706, 784, 1177, 1277
Fsp4HI	GCNGC	4 cut(s)	236, 346, 471, 1042
FspBI	CTAG	2 cut(s)	447, 1121
GluI	GCNGC	4 cut(s)	236, 346, 471, 1042
GsuI	CTGGAG	1 cut(s)	820
HaeIII	GGCC	1 cut(s)	509
HapII	CCGG	1 cut(s)	1190
Hin1II	CATG	4 cut(s)	221, 531, 586, 996
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	3 cut(s)	275, 875, 955
HpaII	CCGG	1 cut(s)	1190
HphI	GGTGA	3 cut(s)	50, 206, 1102
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	7 cut(s)	45, 199, 635, 724, 760, 1226, 1295
Hpy188III	TCNNGA	4 cut(s)	164, 566, 764, 1190
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	67, 77, 328, 799, 1091
HpyCH4III	ACNGT	5 cut(s)	99, 153, 170, 484, 609
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	6 cut(s)	30, 348, 671, 719, 748, 1238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1277
HpyF3I	CTNAG	3 cut(s)	198, 493, 1114
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	221, 531, 586, 996
Kpn2I	TCCGGA	1 cut(s)	1189
Ksp22I	TGATCA	3 cut(s)	40, 211, 1138
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	5 cut(s)	132, 706, 839, 970, 1002
Lsp1109I	GCAGC	4 cut(s)	222, 332, 457, 1053
LweI	GCATC	2 cut(s)	357, 728
MaeI	CTAG	2 cut(s)	447, 1121
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	6 cut(s)	326, 613, 657, 913, 1108, 1125
MflI	RGATCY	3 cut(s)	450, 685, 760
MhlI	GDGCHC	1 cut(s)	396
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	3 cut(s)	175, 498, 969
MluNI	TGGCCA	1 cut(s)	509
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	4 cut(s)	272, 478, 502, 843
Mox20I	TGGCCA	1 cut(s)	509
Mph1103I	ATGCAT	1 cut(s)	750
MroI	TCCGGA	1 cut(s)	1189
MroXI	GAANNNNTTC	1 cut(s)	809
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	5 cut(s)	183, 282, 401, 552, 900
MslI	CAYNNNNRTG	2 cut(s)	666, 911
Msp20I	TGGCCA	1 cut(s)	509
MspI	CCGG	1 cut(s)	1190
MwoI	GCNNNNNNNGC	1 cut(s)	1277
NlaIII	CATG	4 cut(s)	221, 531, 586, 996
NlaIV	GGNNCC	5 cut(s)	423, 452, 708, 998, 1102
NmeAIII	GCCGAG	1 cut(s)	1198
NmuCI	GTSAC	5 cut(s)	326, 613, 657, 913, 1108
NsiI	ATGCAT	1 cut(s)	750
NspI	RCATGY	1 cut(s)	586
PciI	ACATGT	1 cut(s)	582
PciSI	GCTCTTC	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	2 cut(s)	875, 955
PflFI	GACNNNGTC	2 cut(s)	59, 528
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	237, 347, 472, 1043
Ple19I	CGATCG	1 cut(s)	1095
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PpuMI	RGGWCCY	1 cut(s)	422
PscI	ACATGT	1 cut(s)	582
PshBI	ATTAAT	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	422
PspN4I	GGNNCC	5 cut(s)	423, 452, 708, 998, 1102
PspPI	GGNCC	2 cut(s)	422, 524
PspPPI	RGGWCCY	1 cut(s)	422
PsuI	RGATCY	3 cut(s)	450, 685, 760
PsyI	GACNNNGTC	2 cut(s)	59, 528
PvuI	CGATCG	1 cut(s)	1095
RsaI	GTAC	3 cut(s)	140, 356, 1119
RsaNI	GTAC	3 cut(s)	139, 355, 1118
RseI	CAYNNNNRTG	2 cut(s)	666, 911
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	5 cut(s)	183, 282, 401, 552, 900
SatI	GCNGC	4 cut(s)	236, 346, 471, 1042
Sau96I	GGNCC	2 cut(s)	422, 524
ScaI	AGTACT	3 cut(s)	140, 356, 1119
SchI	GAGTC	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	2 cut(s)	357, 728
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	2 cut(s)	422, 524
SmiMI	CAYNNNNRTG	2 cut(s)	666, 911
SmlI	CTYRAG	2 cut(s)	564, 1195
SmoI	CTYRAG	2 cut(s)	564, 1195
Sse9I	AATT	3 cut(s)	175, 498, 969
SsiI	CCGC	1 cut(s)	1157
SspMI	CTAG	2 cut(s)	447, 1121
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	5 cut(s)	99, 153, 170, 484, 609
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	4 cut(s)	576, 858, 1095, 1209
TasI	AATT	3 cut(s)	175, 498, 969
TatI	WGTACW	3 cut(s)	138, 354, 1117
TfiI	GAWTC	2 cut(s)	875, 955
Tru1I	TTAA	5 cut(s)	183, 282, 401, 552, 900
Tru9I	TTAA	5 cut(s)	183, 282, 401, 552, 900
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	5 cut(s)	326, 613, 657, 913, 1108
TseI	GCWGC	4 cut(s)	235, 345, 470, 1041
Tsp45I	GTSAC	5 cut(s)	326, 613, 657, 913, 1108
TspDTI	ATGAA	5 cut(s)	179, 642, 818, 1031, 1085
TspRI	CASTG	1 cut(s)	645
Tth111I	GACNNNGTC	2 cut(s)	59, 528
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	422, 524
VspI	ATTAAT	1 cut(s)	183
XceI	RCATGY	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	809
XspI	CTAG	2 cut(s)	447, 1121
ZrmI	AGTACT	3 cut(s)	140, 356, 1119
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.