Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006405

Physical Location & Seq

Genomic Coordinates Forward (+)

6460138 .. 6462763

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11380.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGACAAAGCTTTTCAAACCAAGCCTTGCATACTTGGTGATCAGAATACCAGTGACGTAGTTATCTGCTTGAAGGATATAGAAGGACGACACCAACAGTTTTACTCCCATTCATCTGTTCTCATAAAAAGGAGCAAGTACTTTGCTGAACGGTTGTCTAATCCAAGCCCTAGTAATTCCATTAGTGTTCATTGCTCTGAGGTCAACTTTGATCACCATGTCAACCTGTTGAGGTTGTTCTATCTTCCAACAGAGTTAATTTTGGACGCCTTGGACTCTGTTAAGTCTGTTGTTGGTATTCTTCAGTCAGCAGTAAACTTCAAGTGTGACGAGATTGTGTACTGCTGCATCCAGTACTTGGAGGCTGTTCCTTGGGAGGACAAAGAAGAAGAGCACATATTAAGAGCTGTATCAAAGTTGGGTCCTGTAGCTATGCCCATAATAGCTAGGATCCAACCTGTTGATTTAGCTGCCACCAAAACTGTTTTCATCTCAGCAATTCGTGTTGCCACATCCATTGTTGGACCATGTCCTCCATTTGGCAATGAGCTTAAAACTTCTGCTCAAGAGCAAGTTGAGTACATGTTAGGAGAAGACGAGGATACACTATTGGTCAAAGCAGATGATGAAGTCAGATCTGTGGCAAGATTGGGTCTCTTGCATATTTGTTCAACATTTGAAAACGAATTGGCTTCTTTACTTTTGGAGCCAGACCTTGCATCCGAGACAGCAGATGAGAAAATAATGCATAGTTTATCTGATCTTGAATGGATGTGTAGCATACTTGGCAAGATGGATTTGATGAAAGATTTTGTTTCCAATTGGGCCGAAAGCTCCAATATTGTTTTAGGAGTGATCGAGGACAAGAAACTTGATTCATTTATGTGGGGCTTGAAGATTAAGCTCATAGAAGTCACTGCTAAAGTCTTGGAAGCAGTTGGCTATGGTAGTGTGATTCTTCCGGCTCCAATTCGCTTGACATTACTGAAGTCATGGCTCCCTTATATTAGGAAGATGAAGCCGCTCTTGGATGCAAAGAGCAGTGAGGATACAAGTTTTCCATACAAGATGAATGAGGACTTGTGCCAGACCATTGAAGGGGCCATTGTCACATTAGTACTCGCGTTACCATCAAATGATCAAGCCGACATCCTGGCAGACTGGATGAGAGCCGAGCAGGTCCGGTATCCGGACTTGAGCGAGGCTTTCGAGGTCTGGTGTTTCAGAACAAAGTCTGCAAAGAGAAGATTAGTTGAGGTATTGGATGGGGCTGGCAATGCCACACTTACACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

432

Amino Acids

48.2

Weight (kDa)

4.93

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	16 - 121	2.7e-07	BTB/POZ domain
BTB-POZ_ANK-like	PF25553	242 - 409	8.4e-09	BTB/POZ Ankyrin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_4g07840 FvH4_5g11380 FvH4_5g11380
malus_domestica	MD06G1114200.v1.1 MD14G1135500.v1.1
prunus_persica	Prupe.5G127000_v2.0.a1 Prupe.5G127000_v2.0.a1
pyrus_communis	pycom06g10680 pycom14g10870
rosa_chinensis	RchiOBHm_Chr7g0186491
rosa_laevigata	RLG00000004841
rosa_multiflora	Rmu_co8455067.1_g000001 Rmu_sc0000645.1_g000031
rosa_roxburghii	Rroxscaffold_3G00268100 Rroxscaffold_4G00302490
rosa_rugosa	Rorug06G0474700
rosa_samantha	Rh6CG051800 Rh7AG066600 Rh7BG082400 Rh7CG081200 Rh7DG082000
rosa_wichuraiana	Rw7G006820 Rw7G007060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1168
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccBSI	CCGCTC	1 cut(s)	1024
AccII	CGCG	1 cut(s)	1124
AccIII	TCCGGA	1 cut(s)	1189
AciI	CCGC	1 cut(s)	1022
AclWI	GGATC	2 cut(s)	445, 458
AcuI	CTGAAG	2 cut(s)	287, 1007
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	5 cut(s)	140, 341, 356, 581, 1119
AfiI	CCNNNNNNNGG	4 cut(s)	358, 539, 1098, 1189
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	8 cut(s)	17, 73, 322, 672, 680, 767, 895, 1097
AjnI	CCWGG	1 cut(s)	1152
AjuI	GAANNNNNNNTTGG	4 cut(s)	470, 502, 1010, 1042
AluBI	AGCT	8 cut(s)	11, 407, 431, 446, 470, 550, 834, 904
AluI	AGCT	8 cut(s)	11, 407, 431, 446, 470, 550, 834, 904
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	2 cut(s)	659, 719
AlwI	GGATC	2 cut(s)	445, 458
Aor13HI	TCCGGA	1 cut(s)	1189
AoxI	GGCC	2 cut(s)	825, 1101
ApeKI	GCWGC	2 cut(s)	345, 470
AspS9I	GGNCC	5 cut(s)	422, 524, 825, 1101, 1180
AsuHPI	GGTGA	2 cut(s)	50, 206
AvaII	GGWCC	3 cut(s)	422, 524, 1180
BamHI	GGATCC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	332, 457
BccI	CCATC	3 cut(s)	787, 1138, 1259
BciT130I	CCWGG	1 cut(s)	1154
BciVI	GTATCC	3 cut(s)	595, 1042, 1197
BclI	TGATCA	3 cut(s)	40, 211, 1138
BcoDI	GTCTC	2 cut(s)	659, 719
BfaI	CTAG	2 cut(s)	171, 447
BfmI	CTRYAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	1168
BfuI	GTATCC	3 cut(s)	595, 1042, 1197
BglII	AGATCT	1 cut(s)	635
BisI	GCNGC	3 cut(s)	346, 471, 1022
BlsI	GCNGC	3 cut(s)	347, 472, 1023
BmcAI	AGTACT	3 cut(s)	140, 356, 1119
Bme1390I	CCNGG	1 cut(s)	1154
Bme18I	GGWCC	3 cut(s)	422, 524, 1180
BmgT120I	GGNCC	5 cut(s)	422, 524, 825, 1101, 1180
BmiI	GGNNCC	6 cut(s)	423, 452, 708, 966, 998, 1102
BmrFI	CCNGG	1 cut(s)	1154
BmsI	GCATC	3 cut(s)	357, 728, 1021
BpiI	GAAGAC	1 cut(s)	600
BpuEI	CTTGAG	2 cut(s)	549, 1216
BsaHI	GRCGYC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	2 cut(s)	270, 371
BsaWI	WCCGGW	2 cut(s)	1182, 1189
Bsc4I	CCNNNNNNNGG	4 cut(s)	358, 539, 1098, 1189
Bse1I	ACTGG	3 cut(s)	51, 352, 1166
Bse3DI	GCAATG	3 cut(s)	190, 550, 1282
BseAI	TCCGGA	1 cut(s)	1189
BseBI	CCWGG	1 cut(s)	1154
BseDI	CCNNGG	2 cut(s)	270, 371
BseGI	GGATG	8 cut(s)	348, 512, 719, 777, 1036, 1149, 1170, 1270
BseLI	CCNNNNNNNGG	4 cut(s)	358, 539, 1098, 1189
BseMI	GCAATG	3 cut(s)	190, 550, 1282
BseMII	CTCAG	2 cut(s)	189, 507
BseNI	ACTGG	3 cut(s)	51, 352, 1166
BseXI	GCAGC	2 cut(s)	332, 457
Bsh1236I	CGCG	1 cut(s)	1124
BshFI	GGCC	2 cut(s)	827, 1103
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	962, 1183, 1190
BslI	CCNNNNNNNGG	4 cut(s)	358, 539, 1098, 1189
BsmAI	GTCTC	2 cut(s)	659, 719
BsnI	GGCC	2 cut(s)	827, 1103
Bso31I	GGTCTC	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp13I	TCCGGA	1 cut(s)	1189
Bsp143I	GATC	7 cut(s)	40, 211, 450, 635, 760, 855, 1138
BspACI	CCGC	1 cut(s)	1022
BspANI	GGCC	2 cut(s)	827, 1103
BspCNI	CTCAG	2 cut(s)	190, 506
BspEI	TCCGGA	1 cut(s)	1189
BspFNI	CGCG	1 cut(s)	1124
BspLI	GGNNCC	6 cut(s)	423, 452, 708, 966, 998, 1102
BspMI	ACCTGC	1 cut(s)	1168
BspPI	GGATC	2 cut(s)	445, 458
BspQI	GCTCTTC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	659
BsrBI	CCGCTC	1 cut(s)	1024
BsrDI	GCAATG	3 cut(s)	190, 550, 1282
BsrI	ACTGG	3 cut(s)	51, 352, 1166
BssECI	CCNNGG	2 cut(s)	270, 371
BssMI	GATC	7 cut(s)	40, 211, 450, 635, 760, 855, 1138
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	270, 371
Bst2UI	CCWGG	1 cut(s)	1154
Bst4CI	ACNGT	3 cut(s)	99, 153, 484
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	1273
BstDEI	CTNAG	2 cut(s)	198, 493
BstF5I	GGATG	8 cut(s)	348, 512, 719, 777, 1036, 1149, 1170, 1270
BstFNI	CGCG	1 cut(s)	1124
BstKTI	GATC	7 cut(s)	43, 214, 453, 638, 763, 858, 1141
BstMAI	GTCTC	2 cut(s)	659, 719
BstMBI	GATC	7 cut(s)	40, 211, 450, 635, 760, 855, 1138
BstMWI	GCNNNNNNNGC	2 cut(s)	786, 1277
BstNI	CCWGG	1 cut(s)	1154
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	1152
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	1124
BstV1I	GCAGC	2 cut(s)	332, 457
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	2 cut(s)	450, 635
BstYI	RGATCY	2 cut(s)	450, 635
BsuI	GTATCC	3 cut(s)	595, 1042, 1197
BsuRI	GGCC	2 cut(s)	827, 1103
BtsCI	GGATG	8 cut(s)	348, 512, 719, 777, 1036, 1149, 1170, 1270
BtsI	GCAGTG	2 cut(s)	915, 1048
BtsIMutI	CAGTG	3 cut(s)	58, 915, 1048
BveI	ACCTGC	1 cut(s)	1168
Cac8I	GCNNGC	1 cut(s)	1273
Cfr13I	GGNCC	5 cut(s)	422, 524, 825, 1101, 1180
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	5 cut(s)	139, 340, 355, 580, 1118
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	4 cut(s)	218, 528, 583, 993
CviQI	GTAC	5 cut(s)	139, 340, 355, 580, 1118
DdeI	CTNAG	2 cut(s)	198, 493
DpnI	GATC	7 cut(s)	42, 213, 452, 637, 762, 857, 1140
DpnII	GATC	7 cut(s)	40, 211, 450, 635, 760, 855, 1138
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	2 cut(s)	270, 371
Eco31I	GGTCTC	1 cut(s)	659
Eco47I	GGWCC	3 cut(s)	422, 524, 1180
Eco57I	CTGAAG	2 cut(s)	287, 1007
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	1152
EcoT14I	CCWWGG	2 cut(s)	270, 371
EcoT22I	ATGCAT	1 cut(s)	750
ErhI	CCWWGG	2 cut(s)	270, 371
FaeI	CATG	4 cut(s)	221, 531, 586, 996
FalI	AAGNNNNNCTT	2 cut(s)	1010, 1042
FatI	CATG	4 cut(s)	217, 527, 582, 992
FbaI	TGATCA	3 cut(s)	40, 211, 1138
Fnu4HI	GCNGC	3 cut(s)	346, 471, 1022
FokI	GGATG	8 cut(s)	335, 499, 706, 784, 1043, 1136, 1177, 1277
Fsp4HI	GCNGC	3 cut(s)	346, 471, 1022
FspBI	CTAG	2 cut(s)	171, 447
GluI	GCNGC	3 cut(s)	346, 471, 1022
HaeIII	GGCC	2 cut(s)	827, 1103
HapII	CCGG	3 cut(s)	962, 1183, 1190
HgaI	GACGC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	4 cut(s)	221, 531, 586, 996
HincII	GTYRAC	2 cut(s)	205, 223
HindII	GTYRAC	2 cut(s)	205, 223
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	3 cut(s)	275, 875, 955
HpaII	CCGG	3 cut(s)	962, 1183, 1190
HphI	GGTGA	2 cut(s)	50, 206
Hpy166II	GTNNAC	4 cut(s)	205, 223, 316, 340
Hpy188I	TCNGA	7 cut(s)	45, 199, 635, 724, 760, 1226, 1295
Hpy188III	TCNNGA	3 cut(s)	566, 764, 1190
Hpy8I	GTNNAC	4 cut(s)	205, 223, 316, 340
HpyAV	CCTTC	3 cut(s)	67, 77, 1091
HpyCH4III	ACNGT	3 cut(s)	99, 153, 484
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	7 cut(s)	30, 348, 661, 719, 748, 1034, 1238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	786, 1277
HpyF3I	CTNAG	2 cut(s)	198, 493
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	221, 531, 586, 996
Kpn2I	TCCGGA	1 cut(s)	1189
Ksp22I	TGATCA	3 cut(s)	40, 211, 1138
Kzo9I	GATC	7 cut(s)	40, 211, 450, 635, 760, 855, 1138
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	5 cut(s)	132, 706, 839, 970, 1002
Lsp1109I	GCAGC	2 cut(s)	332, 457
LweI	GCATC	3 cut(s)	357, 728, 1021
MaeI	CTAG	2 cut(s)	171, 447
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	5 cut(s)	53, 326, 913, 1108, 1125
MalI	GATC	7 cut(s)	42, 213, 452, 637, 762, 857, 1140
MbiI	CCGCTC	1 cut(s)	1024
MboI	GATC	7 cut(s)	40, 211, 450, 635, 760, 855, 1138
MboII	GAAGA	9 cut(s)	236, 293, 398, 401, 605, 907, 950, 1024, 1257
MfeI	CAATTG	1 cut(s)	820
MflI	RGATCY	2 cut(s)	450, 635
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	6 cut(s)	175, 258, 498, 686, 820, 969
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	3 cut(s)	272, 478, 502
Mph1103I	ATGCAT	1 cut(s)	750
MroI	TCCGGA	1 cut(s)	1189
MseI	TTAA	5 cut(s)	257, 282, 401, 552, 900
MslI	CAYNNNNRTG	1 cut(s)	883
MspI	CCGG	3 cut(s)	962, 1183, 1190
MspR9I	CCNGG	1 cut(s)	1154
MunI	CAATTG	1 cut(s)	820
MvaI	CCWGG	1 cut(s)	1154
MvnI	CGCG	1 cut(s)	1124
MwoI	GCNNNNNNNGC	2 cut(s)	786, 1277
NdeII	GATC	7 cut(s)	40, 211, 450, 635, 760, 855, 1138
NlaIII	CATG	4 cut(s)	221, 531, 586, 996
NlaIV	GGNNCC	6 cut(s)	423, 452, 708, 966, 998, 1102
NmeAIII	GCCGAG	1 cut(s)	1198
NmuCI	GTSAC	4 cut(s)	53, 326, 913, 1108
NsiI	ATGCAT	1 cut(s)	750
NspI	RCATGY	1 cut(s)	586
PciI	ACATGT	1 cut(s)	582
PciSI	GCTCTTC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	875, 955
PflFI	GACNNNGTC	1 cut(s)	528
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	347, 472, 1023
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PpuMI	RGGWCCY	1 cut(s)	422
PscI	ACATGT	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	1152
PspGI	CCWGG	1 cut(s)	1152
PspN4I	GGNNCC	6 cut(s)	423, 452, 708, 966, 998, 1102
PspPI	GGNCC	5 cut(s)	422, 524, 825, 1101, 1180
PspPPI	RGGWCCY	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	450, 635
PsyI	GACNNNGTC	1 cut(s)	528
RsaI	GTAC	5 cut(s)	140, 341, 356, 581, 1119
RsaNI	GTAC	5 cut(s)	139, 340, 355, 580, 1118
RseI	CAYNNNNRTG	1 cut(s)	883
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	5 cut(s)	257, 282, 401, 552, 900
SatI	GCNGC	3 cut(s)	346, 471, 1022
Sau3AI	GATC	7 cut(s)	40, 211, 450, 635, 760, 855, 1138
Sau96I	GGNCC	5 cut(s)	422, 524, 825, 1101, 1180
ScaI	AGTACT	3 cut(s)	140, 356, 1119
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	1154
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	3 cut(s)	357, 728, 1021
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	3 cut(s)	422, 524, 1180
SmiMI	CAYNNNNRTG	1 cut(s)	883
SmlI	CTYRAG	2 cut(s)	564, 1195
SmoI	CTYRAG	2 cut(s)	564, 1195
Sse9I	AATT	6 cut(s)	175, 258, 498, 686, 820, 969
SsiI	CCGC	1 cut(s)	1022
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	2 cut(s)	171, 447
StyD4I	CCNGG	1 cut(s)	1152
StyI	CCWWGG	2 cut(s)	270, 371
TaaI	ACNGT	3 cut(s)	99, 153, 484
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	858, 1209
TasI	AATT	6 cut(s)	175, 258, 498, 686, 820, 969
TatI	WGTACW	5 cut(s)	138, 339, 354, 579, 1117
TauI	GCSGC	1 cut(s)	1024
TfiI	GAWTC	2 cut(s)	875, 955
Tru1I	TTAA	5 cut(s)	257, 282, 401, 552, 900
Tru9I	TTAA	5 cut(s)	257, 282, 401, 552, 900
TscAI	CASTG	3 cut(s)	58, 922, 1048
TseFI	GTSAC	4 cut(s)	53, 326, 913, 1108
TseI	GCWGC	2 cut(s)	345, 470
Tsp45I	GTSAC	4 cut(s)	53, 326, 913, 1108
TspDTI	ATGAA	8 cut(s)	102, 179, 478, 642, 818, 867, 1031, 1085
TspRI	CASTG	3 cut(s)	58, 922, 1048
Tth111I	GACNNNGTC	1 cut(s)	528
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	3 cut(s)	422, 524, 1180
XceI	RCATGY	1 cut(s)	586
XspI	CTAG	2 cut(s)	171, 447
ZrmI	AGTACT	3 cut(s)	140, 356, 1119
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.