FvH4_4g07920

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009414
Physical Location & Seq
Forward (+)
7476800 .. 7485151
8352 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07920.t8

Sequence Viewer

Length: 2409 bp
ATGATTGGAGGCGGCTACAGCTACGTCTCAGCCCCACCGGCCTTCTCCACCGACGCCAAGCGCCTACTCGTCTGCACCGGCACCATCGTCTCCGTCTTCAGCACCTCCACCGCCCTACAGGTTTCCGCTTTGGAAGGTCACACGGCGTTGGTCACCTCCGTCTTAGTGGTCCCCGGCAACAAAGCTCTCAGCTTCTGCTGGACGGCCTCGCTTGACGGCACAATTAGGTATTGGGACTATGCGGCGGCCGAGTTGATGAAGACGATTGATATCAAGATGCCTATCTATTCTATGGTTATTCCGGCGTTGTTGTTGGGCCAAACGGATTTGAAGATGATGCCGGCGGATGCTTTTGCTTATTTGTCTGTTGAAAACACACAAGTGCAGGAGAATTCGGGGAAGGGCTTGCGTGGCCAGATTCGCAAGTGTAATTTGACTGAGTCTCGGTTGGCTGGTGTTGTTCTCGCAGAGACAAGAAAACCAGAAGTTATATCTATCAGTCCCTCTGGAAAATTCTTTGGCATCCGGAACAAGCGGAAGCTTCACATCTGGAAAACCCCTGCCAAAGATTCTAAACTCCCAGTGGCTAAGATTACGCTACACCATACAAGAAATTTTACACATCTTGCATTTCATCCAACAAAGAGGCTCGTTGCTGCAGGTGATACATCTGGGAGAATTCTAATCTGGAGAGGGTTTGGTAACCATACATTTTCAGATGGTGAAAAAATAGTAAATAGAGGATCAATGAATGATGAGGAAGAAAAACCTGGTACCAGGGGAAATGATGATGCTGATTCTTGTACCACTTGGCATTGGCATCCTACGGGAATCAATCTTCTTCGTTTTTCTTCTGATGGAGCGTACTTATATTCAGGTGGAAAGGAAGGAGTTCTCGTAGACTGGCAGCTAGACACAGGGAAAAAGAAATTTTTACCAAGAATTGGATCTCCACTTATATATTTAACTGATTCTCTAGATCCAACACTTTCCGCTATATCTTGTGCAGATAATCAAATTCACTTGCTAAAAACGCCCTCAATGGAAATCACAAAGTCTATTTTGGGGATCAAGCTCCCATTTTCTTCTCCAGAGGTATATGACGGCATGTGCAACAAGTTTGCCTTTGATGACACTGCTGGGTTAGTTGCCTTGTGTACAGAGAACTATCGCATCCAGTTTTACAGCTTGTTTGATGACCGTGAAATTTCTGAGGTTCAAGTATGTGAGAGAAATCATCAACCAGGCGATGAAGTCTCTGTAATAGTGACTTTGGTGTCTCTCTCTGGAGATGGCTCTATGATGAGCACTGTGGAAGTTAATCTTCCTGAGGATGGAATAGGTGGTTTTGTGTGTCTTAAGTTCTGGGCATCGGATTCACAGAACAAAAATTTCAACTTGTCCACCATTGTGTATGAACCTCACAGGGATGCTGGAATTTCTGCTGTTGCTTTCCATCCTACCCGTCAAATGGTTGTCAGTTCATCATACGGTGGGGATTTGAAGATTTGGGTTTGCAGTGATGAGATTCCACAGAAACAAGATGCATTACAGCATTCTGGTTGGATGTGCCATGCTGTAGGTTCATACAAGAAAAAGCCAATGACAGCTGCTGCATTTTCTGCCGATGGTTCTGTGCTGGCTGTTGCAGCTGAAACTGTAATCACACTATGGGACCCTGACAACAACATGCTTGTGGCTGTGCTTGGAGTTATGCAGATGCCAATTTTGACCCTCTCCTTTGCTGGGGAGTATCTTCTGTCCATCTCCCGAGGTTCGAAACCACAATTATCTGTGTGGAGCATGTCAAAACTGTCCGAGTCTTGGTCATACAAGCTTGACATAGAAGATGTTACTTGTGCAAAAGATTCATCATCATTTGCAGTTCTAGCTCTTTTGCCAAAATCATCTAATGAACCAATTTTTCAAGGAAAAGACGGGTTAATCTTATTATTCAATGCTACAGATCCTATTCCATTGGCTATGTGGTCCGTAAGGAAGGCTAAGGGAGGGGGACTTGCTTTTCTTAAAGGAAACTCACCTTCCTTTCAACATCAAAGTATATTTGGTGGAAAATCACCACAAGCTTTGCTTGCCTATATAAATGCCGATCATGAGTACATCCTCTTTGATCCATATGACAACGATGCAAGTAAACTTAGTTTGACCAGGACGAAGGATCATATTTCTGCTGACGAAACAGCGCAATTTGGATATGCATCTATCTATGGGGAGCTACCGCAATTTGAGATGAAGACAGACCAGAACTTGTTAGCCCCATATGCTCCATCACAAAGGCCTTGGGAGACCATTTTTAGCGGGTCATCCCATAATCTTCTACCCCTACCTAAATTGTGTTTAGAGTTTATGGAATCGCTACTGGAAAGGAGGACTACCACAGTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
WD40

Protein Analysis

803

Amino Acids

88.0

Weight (kDa)

6.05

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR75_1st PF23869 158 - 227 9.5e-13 WD repeat-containing protein 75 first beta-propeller
Beta-prop_WDR75_2nd PF23769 277 - 534 2.5e-33 WD repeat-containing protein 75 second beta-propeller
WD40_Prp19 PF24814 343 - 503 9.7e-09 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 365 - 498 8.6e-07 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 366 - 494 2.4e-08 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 650
AasI GACNNNNNNGTC 1 cut(s) 1276
Acc36I ACCTGC 1 cut(s) 650
Acc65I GGTACC 1 cut(s) 773
AccB1I GGYRCC 2 cut(s) 80, 773
AccB7I CCANNNNNTGG 1 cut(s) 944
AccI GTMKAC 1 cut(s) 900
AccIII TCCGGA 1 cut(s) 525
AclWI GGATC 7 cut(s) 751, 955, 974, 1076, 1961, 2126, 2187
AcoI YGGCCR 2 cut(s) 246, 412
AcsI RAATTY 9 cut(s) 391, 512, 613, 678, 929, 1017, 1206, 1390, 1437
AcuI CTGAAG 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 5 cut(s) 775, 805, 866, 1159, 2120
AfiI CCNNNNNNNGG 5 cut(s) 944, 1334, 1471, 1746, 1824
AflII CTTAAG 1 cut(s) 1358
AgsI TTSAA 8 cut(s) 331, 371, 1220, 1396, 1504, 1928, 1957, 2051
AjnI CCWGG 4 cut(s) 769, 776, 1243, 2168
AleI CACNNNNGTG 2 cut(s) 380, 1409
Alw21I GWGCWC 1 cut(s) 1310
Alw26I GTCTC 7 cut(s) 31, 94, 447, 464, 1261, 1284, 2300
AlwI GGATC 7 cut(s) 751, 955, 974, 1076, 1961, 2126, 2187
AlwNI CAGNNNCTG 2 cut(s) 195, 1613
Ama87I CYCGRG 1 cut(s) 1770
Aor13HI TCCGGA 1 cut(s) 525
AoxI GGCC 6 cut(s) 39, 204, 246, 316, 412, 2297
ApeKI GCWGC 5 cut(s) 656, 907, 1610, 1613, 1649
ApoI RAATTY 9 cut(s) 391, 512, 613, 678, 929, 1017, 1206, 1390, 1437
Asp700I GAANNNNTTC 1 cut(s) 891
Asp718I GGTACC 1 cut(s) 773
AspLEI GCGC 2 cut(s) 63, 2206
AspS9I GGNCC 4 cut(s) 169, 316, 1675, 1989
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 5 cut(s) 145, 674, 734, 2031, 2070
AsuII TTCGAA 1 cut(s) 1778
AvaI CYCGRG 1 cut(s) 1770
AvaII GGWCC 3 cut(s) 169, 1675, 1989
AxyI CCTNAGG 1 cut(s) 1329
BalI TGGCCA 1 cut(s) 414
BanI GGYRCC 2 cut(s) 80, 773
BbsI GAAGAC 3 cut(s) 88, 266, 2261
Bbv12I GWGCWC 1 cut(s) 1310
BbvI GCAGC 5 cut(s) 643, 919, 1597, 1600, 1661
BccI CCATC 9 cut(s) 92, 713, 851, 1286, 1328, 1464, 1622, 1772, 2296
BceAI ACGGC 4 cut(s) 159, 219, 232, 1120
BciT130I CCWGG 4 cut(s) 771, 778, 1245, 2170
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 7 cut(s) 31, 94, 447, 464, 1261, 1284, 2300
BfaI CTAG 3 cut(s) 911, 977, 1889
BfmI CTRYAG 5 cut(s) 16, 116, 657, 1578, 1962
BfoI RGCGCY 1 cut(s) 64
BfrI CTTAAG 1 cut(s) 1358
BfuAI ACCTGC 1 cut(s) 650
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 8 cut(s) 13, 243, 246, 657, 908, 1611, 1614, 1650
BlsI GCNGC 8 cut(s) 14, 244, 247, 658, 909, 1612, 1615, 1651
Bme1390I CCNGG 5 cut(s) 174, 771, 778, 1245, 2170
Bme18I GGWCC 3 cut(s) 169, 1675, 1989
BmeT110I CYCGRG 1 cut(s) 1770
BmgT120I GGNCC 4 cut(s) 169, 316, 1675, 1989
BmiI GGNNCC 5 cut(s) 82, 171, 775, 1676, 1677
BmrFI CCNGG 5 cut(s) 174, 771, 778, 1245, 2170
BmrI ACTGGG 1 cut(s) 575
BmuI ACTGGG 1 cut(s) 575
BpiI GAAGAC 3 cut(s) 88, 266, 2261
BpmI CTGGAG 3 cut(s) 709, 1074, 1308
Bpu10I CCTNAGC 1 cut(s) 2004
Bpu14I TTCGAA 1 cut(s) 1778
BpuMI CCSGG 1 cut(s) 174
BsaBI GATNNNNATC 3 cut(s) 269, 281, 2218
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 2300
BsaJI CCNNGG 4 cut(s) 172, 777, 1771, 2300
BsaWI WCCGGW 1 cut(s) 525
BsaXI ACNNNNNCTCC 2 cut(s) 882, 912
Bsc4I CCNNNNNNNGG 5 cut(s) 944, 1334, 1471, 1746, 1824
Bse118I RCCGGY 3 cut(s) 37, 77, 340
Bse1I ACTGG 4 cut(s) 581, 908, 1177, 2385
Bse21I CCTNAGG 1 cut(s) 1329
Bse8I GATNNNNATC 3 cut(s) 269, 281, 2218
BseAI TCCGGA 1 cut(s) 525
BseBI CCWGG 4 cut(s) 771, 778, 1245, 2170
BseDI CCNNGG 4 cut(s) 172, 777, 1771, 2300
BseJI GATNNNNATC 3 cut(s) 269, 281, 2218
BseLI CCNNNNNNNGG 5 cut(s) 944, 1334, 1471, 1746, 1824
BseMII CTCAG 5 cut(s) 42, 202, 429, 1203, 1320
BseNI ACTGG 4 cut(s) 581, 908, 1177, 2385
BseX3I CGGCCG 1 cut(s) 246
BseXI GCAGC 5 cut(s) 643, 919, 1597, 1600, 1661
BseYI CCCAGC 2 cut(s) 1139, 1745
BsgI GTGCAG 3 cut(s) 58, 404, 1026
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 6 cut(s) 41, 206, 248, 318, 414, 2299
BshNI GGYRCC 2 cut(s) 80, 773
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 1310
BsiHKCI CYCGRG 1 cut(s) 1770
BsiSI CCGG 6 cut(s) 38, 78, 174, 302, 341, 526
BslFI GGGAC 5 cut(s) 155, 248, 486, 1688, 2028
BslI CCNNNNNNNGG 5 cut(s) 944, 1334, 1471, 1746, 1824
BsmAI GTCTC 7 cut(s) 31, 94, 447, 464, 1261, 1284, 2300
BsmBI CGTCTC 2 cut(s) 31, 94
BsmFI GGGAC 5 cut(s) 155, 248, 486, 1688, 2028
BsmI GAATGC 1 cut(s) 1555
BsnI GGCC 6 cut(s) 41, 206, 248, 318, 414, 2299
Bso31I GGTCTC 1 cut(s) 2300
BsoBI CYCGRG 1 cut(s) 1770
Bsp119I TTCGAA 1 cut(s) 1778
Bsp1286I GDGCHC 1 cut(s) 1310
Bsp13I TCCGGA 1 cut(s) 525
Bsp1407I TGTACA 1 cut(s) 1157
Bsp143I GATC 8 cut(s) 743, 947, 979, 1068, 1966, 2110, 2131, 2179
BspANI GGCC 6 cut(s) 41, 206, 248, 318, 414, 2299
BspCNI CTCAG 5 cut(s) 41, 201, 430, 1204, 1321
BspEI TCCGGA 1 cut(s) 525
BspHI TCATGA 1 cut(s) 2113
BspLI GGNNCC 5 cut(s) 82, 171, 775, 1676, 1677
BspMAI CTGCAG 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 650
BspPI GGATC 7 cut(s) 751, 955, 974, 1076, 1961, 2126, 2187
BspT104I TTCGAA 1 cut(s) 1778
BspT107I GGYRCC 2 cut(s) 80, 773
BspTI CTTAAG 1 cut(s) 1358
BspTNI GGTCTC 1 cut(s) 2300
BsrFI RCCGGY 3 cut(s) 37, 77, 340
BsrGI TGTACA 1 cut(s) 1157
BsrI ACTGG 4 cut(s) 581, 908, 1177, 2385
BssAI RCCGGY 3 cut(s) 37, 77, 340
BssECI CCNNGG 4 cut(s) 172, 777, 1771, 2300
BssMI GATC 8 cut(s) 743, 947, 979, 1068, 1966, 2110, 2131, 2179
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 2300
Bst2UI CCWGG 4 cut(s) 771, 778, 1245, 2170
Bst4CI ACNGT 6 cut(s) 1202, 1312, 1493, 1660, 1815, 2401
BstACI GRCGYC 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 1358
BstAPI GCANNNNNTGC 1 cut(s) 1622
BstAUI TGTACA 1 cut(s) 1157
BstBI TTCGAA 1 cut(s) 1778
BstC8I GCNNGC 4 cut(s) 342, 407, 1641, 2094
BstDEI CTNAG 9 cut(s) 28, 163, 188, 438, 588, 1212, 1329, 2004, 2159
BstEII GGTNACC 2 cut(s) 151, 701
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 2 cut(s) 63, 2206
BstKTI GATC 8 cut(s) 746, 950, 982, 1071, 1969, 2113, 2134, 2182
BstMAI GTCTC 7 cut(s) 31, 94, 447, 464, 1261, 1284, 2300
BstMBI GATC 8 cut(s) 743, 947, 979, 1068, 1966, 2110, 2131, 2179
BstMCI CGRYCG 1 cut(s) 249
BstNI CCWGG 4 cut(s) 771, 778, 1245, 2170
BstNSI RCATGY 3 cut(s) 1111, 1693, 1807
BstPI GGTNACC 2 cut(s) 151, 701
BstSCI CCNGG 5 cut(s) 172, 769, 776, 1243, 2168
BstSFI CTRYAG 5 cut(s) 16, 116, 657, 1578, 1962
BstV1I GCAGC 5 cut(s) 643, 919, 1597, 1600, 1661
BstV2I GAAGAC 3 cut(s) 88, 266, 2261
BstX2I RGATCY 3 cut(s) 947, 979, 1966
BstYI RGATCY 3 cut(s) 947, 979, 1966
BstZI CGGCCG 1 cut(s) 246
Bsu36I CCTNAGG 1 cut(s) 1329
BsuRI GGCC 6 cut(s) 41, 206, 248, 318, 414, 2299
BtgZI GCGATG 1 cut(s) 1263
BtsI GCAGTG 2 cut(s) 1134, 1525
BtsIMutI CAGTG 4 cut(s) 588, 1134, 1308, 1525
BveI ACCTGC 1 cut(s) 650
Cac8I GCNNGC 4 cut(s) 342, 407, 1641, 2094
CaiI CAGNNNCTG 2 cut(s) 195, 1613
CciI TCATGA 1 cut(s) 2113
CfoI GCGC 2 cut(s) 63, 2206
Cfr10I RCCGGY 3 cut(s) 37, 77, 340
Cfr13I GGNCC 4 cut(s) 169, 316, 1675, 1989
CseI GACGC 1 cut(s) 62
CsiI ACCWGGT 1 cut(s) 769
Csp6I GTAC 5 cut(s) 774, 804, 865, 1158, 2119
CspCI CAANNNNNGTGG 2 cut(s) 2070, 2105
CviAII CATG 5 cut(s) 1108, 1574, 1690, 1804, 2114
CviQI GTAC 5 cut(s) 774, 804, 865, 1158, 2119
DdeI CTNAG 9 cut(s) 28, 163, 188, 438, 588, 1212, 1329, 2004, 2159
DpnI GATC 8 cut(s) 745, 949, 981, 1070, 1968, 2112, 2133, 2181
DpnII GATC 8 cut(s) 743, 947, 979, 1068, 1966, 2110, 2131, 2179
DrdI GACNNNNNNGTC 1 cut(s) 1276
DseDI GACNNNNNNGTC 1 cut(s) 1276
EaeI YGGCCR 2 cut(s) 246, 412
EagI CGGCCG 1 cut(s) 246
EciI GGCGGA 1 cut(s) 359
EclXI CGGCCG 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 2300
Eco147I AGGCCT 1 cut(s) 2299
Eco31I GGTCTC 1 cut(s) 2300
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 3 cut(s) 169, 1675, 1989
Eco52I CGGCCG 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 82
Eco81I CCTNAGG 1 cut(s) 1329
Eco88I CYCGRG 1 cut(s) 1770
Eco91I GGTNACC 2 cut(s) 151, 701
EcoO109I RGGNCCY 1 cut(s) 1675
EcoO65I GGTNACC 2 cut(s) 151, 701
EcoRI GAATTC 2 cut(s) 391, 678
EcoRII CCWGG 4 cut(s) 769, 776, 1243, 2168
EcoRV GATATC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 2300
EcoT22I ATGCAT 2 cut(s) 1549, 2221
ErhI CCWWGG 1 cut(s) 2300
Esp3I CGTCTC 2 cut(s) 31, 94
FaeI CATG 5 cut(s) 1111, 1577, 1693, 1807, 2117
FalI AAGNNNNNCTT 6 cut(s) 1109, 1141, 1308, 1340, 2076, 2108
FaqI GGGAC 5 cut(s) 155, 248, 486, 1688, 2028
FatI CATG 5 cut(s) 1107, 1573, 1689, 1803, 2113
FauI CCCGC 1 cut(s) 2312
FauNDI CATATG 2 cut(s) 2137, 2281
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 8 cut(s) 13, 243, 246, 657, 908, 1611, 1614, 1650
Fsp4HI GCNGC 8 cut(s) 13, 243, 246, 657, 908, 1611, 1614, 1650
FspBI CTAG 3 cut(s) 911, 977, 1889
GlaI GCGC 2 cut(s) 62, 2205
GluI GCNGC 8 cut(s) 13, 243, 246, 657, 908, 1611, 1614, 1650
GsaI CCCAGC 2 cut(s) 1143, 1749
GsuI CTGGAG 3 cut(s) 709, 1074, 1308
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 6 cut(s) 41, 206, 248, 318, 414, 2299
HapII CCGG 6 cut(s) 38, 78, 174, 302, 341, 526
HgaI GACGC 1 cut(s) 62
HhaI GCGC 2 cut(s) 63, 2206
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 5 cut(s) 1111, 1577, 1693, 1807, 2117
Hin6I GCGC 2 cut(s) 61, 2204
HinP1I GCGC 2 cut(s) 61, 2204
HindIII AAGCTT 3 cut(s) 539, 1835, 2085
HpaII CCGG 6 cut(s) 38, 78, 174, 302, 341, 526
HphI GGTGA 5 cut(s) 145, 674, 734, 2031, 2070
Hpy166II GTNNAC 4 cut(s) 901, 1158, 1404, 2156
Hpy188I TCNGA 5 cut(s) 718, 856, 1213, 1375, 1819
Hpy8I GTNNAC 4 cut(s) 901, 1158, 1404, 2156
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 7 cut(s) 52, 128, 394, 881, 1993, 2052, 2170
HpyCH4III ACNGT 6 cut(s) 1202, 1312, 1493, 1660, 1815, 2401
HpyCH4IV ACGT 1 cut(s) 24
HpyF3I CTNAG 9 cut(s) 28, 163, 188, 438, 588, 1212, 1329, 2004, 2159
HpySE526I ACGT 1 cut(s) 24
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 5 cut(s) 1111, 1577, 1693, 1807, 2117
HspAI GCGC 2 cut(s) 61, 2204
KflI GGGWCCC 1 cut(s) 1675
Kpn2I TCCGGA 1 cut(s) 525
KpnI GGTACC 1 cut(s) 777
KroI GCCGGC 1 cut(s) 340
KroNI GCCGGC 1 cut(s) 342
Kzo9I GATC 8 cut(s) 743, 947, 979, 1068, 1966, 2110, 2131, 2179
LmnI GCTCC 5 cut(s) 860, 1080, 1800, 2233, 2290
Lsp1109I GCAGC 5 cut(s) 643, 919, 1597, 1600, 1661
MabI ACCWGGT 1 cut(s) 769
MaeI CTAG 3 cut(s) 911, 977, 1889
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 5 cut(s) 137, 151, 701, 1267, 1852
MalI GATC 8 cut(s) 745, 949, 981, 1070, 1968, 2112, 2133, 2181
MboI GATC 8 cut(s) 743, 947, 979, 1068, 1966, 2110, 2131, 2179
MflI RGATCY 3 cut(s) 947, 979, 1966
MhlI GDGCHC 1 cut(s) 1310
MlsI TGGCCA 1 cut(s) 414
MluNI TGGCCA 1 cut(s) 414
MlyI GAGTC 2 cut(s) 449, 1829
MmeI TCCRAC 3 cut(s) 662, 1007, 1544
Mox20I TGGCCA 1 cut(s) 414
Mph1103I ATGCAT 2 cut(s) 1549, 2221
MroI TCCGGA 1 cut(s) 525
MroNI GCCGGC 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 891
MscI TGGCCA 1 cut(s) 414
MseI TTAA 5 cut(s) 965, 1320, 1359, 1943, 2028
MslI CAYNNNNRTG 4 cut(s) 380, 1409, 1428, 1694
Msp20I TGGCCA 1 cut(s) 414
MspA1I CMGCKG 2 cut(s) 1610, 1652
MspCI CTTAAG 1 cut(s) 1358
MspI CCGG 6 cut(s) 38, 78, 174, 302, 341, 526
MspR9I CCNGG 5 cut(s) 174, 771, 778, 1245, 2170
Mva1269I GAATGC 1 cut(s) 1555
MvaI CCWGG 4 cut(s) 771, 778, 1245, 2170
NaeI GCCGGC 1 cut(s) 342
NciI CCSGG 1 cut(s) 174
NdeI CATATG 2 cut(s) 2137, 2281
NdeII GATC 8 cut(s) 743, 947, 979, 1068, 1966, 2110, 2131, 2179
NgoMIV GCCGGC 1 cut(s) 340
NlaIII CATG 5 cut(s) 1111, 1577, 1693, 1807, 2117
NlaIV GGNNCC 5 cut(s) 82, 171, 775, 1676, 1677
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 3 cut(s) 137, 151, 1267
NsiI ATGCAT 2 cut(s) 1549, 2221
NspI RCATGY 3 cut(s) 1111, 1693, 1807
NspV TTCGAA 1 cut(s) 1778
OliI CACNNNNGTG 2 cut(s) 380, 1409
PagI TCATGA 1 cut(s) 2113
PaqCI CACCTGC 1 cut(s) 650
PceI AGGCCT 1 cut(s) 2299
PctI GAATGC 1 cut(s) 1555
PdiI GCCGGC 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 9 cut(s) 418, 569, 797, 831, 971, 1376, 1528, 1868, 2372
PflFI GACNNNGTC 1 cut(s) 439
PflMI CCANNNNNTGG 1 cut(s) 944
PkrI GCNGC 8 cut(s) 14, 244, 247, 658, 909, 1612, 1615, 1651
PleI GAGTC 2 cut(s) 448, 1828
PpsI GAGTC 2 cut(s) 448, 1828
PpuMI RGGWCCY 1 cut(s) 1675
Psp5II RGGWCCY 1 cut(s) 1675
Psp6I CCWGG 4 cut(s) 769, 776, 1243, 2168
PspEI GGTNACC 2 cut(s) 151, 701
PspFI CCCAGC 2 cut(s) 1139, 1745
PspGI CCWGG 4 cut(s) 769, 776, 1243, 2168
PspN4I GGNNCC 5 cut(s) 82, 171, 775, 1676, 1677
PspPI GGNCC 4 cut(s) 169, 316, 1675, 1989
PspPPI RGGWCCY 1 cut(s) 1675
PstI CTGCAG 1 cut(s) 661
PstNI CAGNNNCTG 2 cut(s) 195, 1613
PsuI RGATCY 3 cut(s) 947, 979, 1966
PsyI GACNNNGTC 1 cut(s) 439
PvuII CAGCTG 2 cut(s) 1610, 1652
RsaI GTAC 5 cut(s) 775, 805, 866, 1159, 2120
RsaNI GTAC 5 cut(s) 774, 804, 865, 1158, 2119
RseI CAYNNNNRTG 4 cut(s) 380, 1409, 1428, 1694
SaqAI TTAA 5 cut(s) 965, 1320, 1359, 1943, 2028
SatI GCNGC 8 cut(s) 13, 243, 246, 657, 908, 1611, 1614, 1650
Sau3AI GATC 8 cut(s) 743, 947, 979, 1068, 1966, 2110, 2131, 2179
Sau96I GGNCC 4 cut(s) 169, 316, 1675, 1989
SchI GAGTC 2 cut(s) 449, 1829
ScrFI CCNGG 5 cut(s) 174, 771, 778, 1245, 2170
SduI GDGCHC 1 cut(s) 1310
SexAI ACCWGGT 1 cut(s) 769
SfcI CTRYAG 5 cut(s) 16, 116, 657, 1578, 1962
SfuI TTCGAA 1 cut(s) 1778
SinI GGWCC 3 cut(s) 169, 1675, 1989
SmiMI CAYNNNNRTG 4 cut(s) 380, 1409, 1428, 1694
SmlI CTYRAG 1 cut(s) 1358
SmoI CTYRAG 1 cut(s) 1358
SseBI AGGCCT 1 cut(s) 2299
SspMI CTAG 3 cut(s) 911, 977, 1889
StuI AGGCCT 1 cut(s) 2299
StyD4I CCNGG 5 cut(s) 172, 769, 776, 1243, 2168
StyI CCWWGG 1 cut(s) 2300
TaaI ACNGT 6 cut(s) 1202, 1312, 1493, 1660, 1815, 2401
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 1778
TatI WGTACW 2 cut(s) 1157, 2118
TauI GCSGC 3 cut(s) 15, 245, 248
TfiI GAWTC 9 cut(s) 418, 569, 797, 831, 971, 1376, 1528, 1868, 2372
Tru1I TTAA 5 cut(s) 965, 1320, 1359, 1943, 2028
Tru9I TTAA 5 cut(s) 965, 1320, 1359, 1943, 2028
TscAI CASTG 4 cut(s) 588, 1141, 1315, 1525
TseFI GTSAC 3 cut(s) 137, 151, 1267
TseI GCWGC 5 cut(s) 656, 907, 1610, 1613, 1649
Tsp45I GTSAC 3 cut(s) 137, 151, 1267
TspGWI ACGGA 4 cut(s) 82, 148, 338, 1981
TspRI CASTG 4 cut(s) 588, 1141, 1315, 1525
Tth111I GACNNNGTC 1 cut(s) 439
Van91I CCANNNNNTGG 1 cut(s) 944
Vha464I CTTAAG 1 cut(s) 1358
VpaK11BI GGWCC 3 cut(s) 169, 1675, 1989
XapI RAATTY 9 cut(s) 391, 512, 613, 678, 929, 1017, 1206, 1390, 1437
XbaI TCTAGA 1 cut(s) 976
XceI RCATGY 3 cut(s) 1111, 1693, 1807
XcmI CCANNNNNNNNNTGG 1 cut(s) 1983
XmiI GTMKAC 1 cut(s) 900
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 3 cut(s) 911, 977, 1889
Zsp2I ATGCAT 2 cut(s) 1549, 2221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.